Gchil4091.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4091.t1
Unique NameGchil4091.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length228
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:682989..683672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1238182.C882_4308
PFAMsLigT_PEase
Max annot lvl204441|Rhodospirillales
KEGG koko:K01975
Evalue2.87e-15
EggNOG OGsCOG1514@1|root,COG1514@2|Bacteria,1RDB2@1224|Proteobacteria,2U7FV@28211|Alphaproteobacteria,2JSQA@204441|Rhodospirillales
EC3.1.4.58
DescriptionHydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
COG categoryJ
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4091Gchil4091Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 682989..683672 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4091.t1.start1Gchil4091.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 682989..682991 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4091.t1.CDS1Gchil4091.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 682989..683672 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4091.t1.exon1Gchil4091.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 682989..683672 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4091.t1.stop1Gchil4091.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 683670..683672 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4091.t1Gchil4091.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 682989..683672 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4091.t1 ID=Gchil4091.t1|Name=Gchil4091.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=228bp
MRAGRTAGGSKDAKLFVAIGLEDSMRLHLCGLPLTHIPRTEHIDDKDYHI
TLNFIGVESVHKVHDALKQVKLEQVEQFEVEVRGVGAFPNSALPLTLWAG
LEQSVQLMELQASLSATLKANGVAVSERATYTPHITLARVVKSARGVAAA
REFLQRNERFEAGKLRVREVLLMETVVGRATAKTVAAAPRYAVRERYALG
RRQQQQQQQQQQQCWSRAHAGAASGAV*
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spliced messenger RNA

>Gchil4091.t1 ID=Gchil4091.t1|Name=Gchil4091.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=684bp|location=Sequence derived from alignment at tig00004373_pilon:682989..683672+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAGCGGGGCGGACGGCGGGCGGGTCGAAGGACGCAAAGCTGTTCGT
GGCTATTGGACTGGAAGATTCGATGAGGTTGCATCTGTGCGGTTTGCCAC
TGACACACATTCCGCGCACGGAGCACATAGATGACAAGGACTATCACATC
ACTCTAAACTTCATCGGGGTAGAAAGCGTGCACAAGGTGCACGACGCTCT
CAAGCAGGTGAAGTTGGAGCAGGTTGAGCAATTCGAGGTGGAGGTACGGG
GGGTGGGGGCGTTCCCGAACAGCGCGCTGCCGCTGACGCTGTGGGCGGGG
CTGGAGCAGTCAGTGCAGCTGATGGAGCTACAGGCAAGTTTGAGCGCAAC
GCTCAAGGCGAACGGAGTGGCGGTGTCGGAACGCGCGACGTACACGCCGC
ACATCACGCTGGCGCGCGTGGTGAAGAGCGCGAGGGGGGTGGCGGCGGCA
AGAGAGTTCCTTCAACGCAACGAGCGCTTCGAGGCGGGGAAGCTGCGCGT
GCGCGAGGTGCTGCTAATGGAGACGGTGGTCGGCCGAGCCACGGCCAAGA
CGGTTGCCGCTGCACCGCGCTACGCCGTGCGCGAACGCTACGCCCTCGGC
CGCCGGCAAcagcagcagcagcagcagcagcagcagcagTGTTGGTCGCG
CGCGCACGCTGGAGCCGCAAGCGGAGCAGTGTAA
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protein sequence of Gchil4091.t1

>Gchil4091.t1 ID=Gchil4091.t1|Name=Gchil4091.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=228bp
MRAGRTAGGSKDAKLFVAIGLEDSMRLHLCGLPLTHIPRTEHIDDKDYHI
TLNFIGVESVHKVHDALKQVKLEQVEQFEVEVRGVGAFPNSALPLTLWAG
LEQSVQLMELQASLSATLKANGVAVSERATYTPHITLARVVKSARGVAAA
REFLQRNERFEAGKLRVREVLLMETVVGRATAKTVAAAPRYAVRERYALG
RRQQQQQQQQQQQCWSRAHAGAASGAV*
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mRNA from alignment at tig00004373_pilon:682989..683672+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4091.t1 ID=Gchil4091.t1|Name=Gchil4091.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=684bp|location=Sequence derived from alignment at tig00004373_pilon:682989..683672+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGAGCGGGGCGGACGGCGGGCGGGTCGAAGGACGCAAAGCTGTTCGT
GGCTATTGGACTGGAAGATTCGATGAGGTTGCATCTGTGCGGTTTGCCAC
TGACACACATTCCGCGCACGGAGCACATAGATGACAAGGACTATCACATC
ACTCTAAACTTCATCGGGGTAGAAAGCGTGCACAAGGTGCACGACGCTCT
CAAGCAGGTGAAGTTGGAGCAGGTTGAGCAATTCGAGGTGGAGGTACGGG
GGGTGGGGGCGTTCCCGAACAGCGCGCTGCCGCTGACGCTGTGGGCGGGG
CTGGAGCAGTCAGTGCAGCTGATGGAGCTACAGGCAAGTTTGAGCGCAAC
GCTCAAGGCGAACGGAGTGGCGGTGTCGGAACGCGCGACGTACACGCCGC
ACATCACGCTGGCGCGCGTGGTGAAGAGCGCGAGGGGGGTGGCGGCGGCA
AGAGAGTTCCTTCAACGCAACGAGCGCTTCGAGGCGGGGAAGCTGCGCGT
GCGCGAGGTGCTGCTAATGGAGACGGTGGTCGGCCGAGCCACGGCCAAGA
CGGTTGCCGCTGCACCGCGCTACGCCGTGCGCGAACGCTACGCCCTCGGC
CGCCGGCAAcagcagcagcagcagcagcagcagcagcagTGTTGGTCGCG
CGCGCACGCTGGAGCCGCAAGCGGAGCAGTGTAA
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Coding sequence (CDS) from alignment at tig00004373_pilon:682989..683672+

>Gchil4091.t1 ID=Gchil4091.t1|Name=Gchil4091.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=684bp|location=Sequence derived from alignment at tig00004373_pilon:682989..683672+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGAGCGGGGCGGACGGCGGGCGGGTCGAAGGACGCAAAGCTGTTCGT
GGCTATTGGACTGGAAGATTCGATGAGGTTGCATCTGTGCGGTTTGCCAC
TGACACACATTCCGCGCACGGAGCACATAGATGACAAGGACTATCACATC
ACTCTAAACTTCATCGGGGTAGAAAGCGTGCACAAGGTGCACGACGCTCT
CAAGCAGGTGAAGTTGGAGCAGGTTGAGCAATTCGAGGTGGAGGTACGGG
GGGTGGGGGCGTTCCCGAACAGCGCGCTGCCGCTGACGCTGTGGGCGGGG
CTGGAGCAGTCAGTGCAGCTGATGGAGCTACAGGCAAGTTTGAGCGCAAC
GCTCAAGGCGAACGGAGTGGCGGTGTCGGAACGCGCGACGTACACGCCGC
ACATCACGCTGGCGCGCGTGGTGAAGAGCGCGAGGGGGGTGGCGGCGGCA
AGAGAGTTCCTTCAACGCAACGAGCGCTTCGAGGCGGGGAAGCTGCGCGT
GCGCGAGGTGCTGCTAATGGAGACGGTGGTCGGCCGAGCCACGGCCAAGA
CGGTTGCCGCTGCACCGCGCTACGCCGTGCGCGAACGCTACGCCCTCGGC
CGCCGGCAAcagcagcagcagcagcagcagcagcagcagTGTTGGTCGCG
CGCGCACGCTGGAGCCGCAAGCGGAGCAGTGTAA
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