Gchil4090.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4090.t1
Unique NameGchil4090.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length667
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:680212..682430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMT634CT
PFAMsSpoU_methylase
Max annot lvl2759|Eukaryota
KEGG koko:K19476
KEGG Pathwayko04144,map04144
Evalue4.73e-29
EggNOG OGsCOG0566@1|root,KOG0838@2759|Eukaryota
DescriptionrRNA methyltransferase
COG categoryJ
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4090Gchil4090Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 680212..682430 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4090.t1Gchil4090.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 680212..682430 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4090.t1.stop1Gchil4090.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 680212..680214 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4090.t1.CDS1Gchil4090.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 680212..680235 -
Gchil4090.t1.CDS2Gchil4090.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 680334..680355 -
Gchil4090.t1.CDS3Gchil4090.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 680476..682430 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4090.t1.exon1Gchil4090.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 680212..680235 -
Gchil4090.t1.exon2Gchil4090.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 680334..680355 -
Gchil4090.t1.exon3Gchil4090.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 680476..682430 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4090.t1.intron1Gchil4090.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 680236..680333 -
Gchil4090.t1.intron2Gchil4090.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 680356..680475 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4090.t1.start1Gchil4090.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 682428..682430 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4090.t1 ID=Gchil4090.t1|Name=Gchil4090.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=667bp
MTPSIDYPAFTSPLPLPIHNRPFQNQPPRSHTESTKCNLYHSTRTKRSPD
SAIPATPTSTTRTHLLNIRALHPDDARLFDALTPSRAQLFSRVLTNRTRH
FTFVLDGVQGAHNLAAIVRSCDAYGIQDLHILTNPYPQNNPNTHQQAAVQ
NMSVLQRFEHDQSVRQVSKGCHKWLTIAEHNAAHDCVKNLKQAGYRVIVS
SVSPSSKPLSSIDLSTKCAFVFGNERNGVTQLIMQHADDFFTIPMMGFVE
SMNVSVAVATTACLIMHRVHSLLPSPSFLLSAEQRRQLAHTWLTKRQPPH
PCPKLLPTKRDMTRLGVRQESTIISNGLFCSVQDASLSDAQYWQEKLRLD
VNTGIRISKYLAKRKFGALGDNDFGKRCQTICDGLSGTHALTYEVVRRSE
RFSTTRKGLFNYFKRLCQRVSASYQPYFDKRGVPLLPPFAPESQAKLEQV
RLAIPKICYSVCLDAARTEWGLSKQQVDRIIESTRSQHYAHCILDTIQCN
EQVRRAQFLDYVRHGANHSQRQVYQLVSGRYPDGTLLSLASAVRLGHESI
CEFTTVEKDALHAFLRLSQAAYICSEIHFAVWSRESKADHLHRVHSPRFG
LLESVLCDAYSDMVMLNASQEVAIARLVFEFDQVLAPLKHHLAANSGTPV
RFEAQKGCLTHVSTLV*
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spliced messenger RNA

>Gchil4090.t1 ID=Gchil4090.t1|Name=Gchil4090.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2001bp|location=Sequence derived from alignment at tig00004373_pilon:680212..682430- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCCCCTCCATCGACTACCCCGCCTTCACGTCTCCCCTCCCACTGCC
TATCCACAATCGCCCCTTTCAAAACCAACCGCCCCGGTCCCACACCGAAT
CCACCAAATGTAATCTATACCATTCAACCCGAACAAAACGTTCACCCGAC
AGCGCAATCCCCGCAACCCCAACCTCCACGACGCGCACCCACCTCCTAAA
TATTCGCGCCTTACATCCAGATGACGCTCGTCTATTCGACGCTCTCACTC
CCTCAAGAGCTCAATTGTTTTCCCGTGTCTTGACCAATCGCACTCGACAC
TTTACCTTTGTCTTGGATGGTGTGCAAGGTGCACACAATCTGGCTGCCAT
TGTTCGTTCGTGTGATGCATATGGCATTCAAGATTTGCACATTTTAACAA
ATCCGTACCCACAAAACAACCCGAATACTCACCAACAAGCAGCCGTGCAA
AACATGTCCGTTCTCCAACGATTCGAACACGACCAAAGTGTGCGCCAAGT
AAGCAAAGGATGCCATAAGTGGCTCACTATAGCAGAACACAACGCCGCCC
ATGACTGTGTCAAAAACTTGAAACAAGCAGGGTATCGTGTTATTGTTTCT
TCTGTGTCCCCCTCTTCAAAGCCATTATCTTCTATAGACCTTTCTACCAA
GTGCGCTTTTGTTTTTGGCAATGAACGAAATGGAGTTACTCAACTTATAA
TGCAGCACGCTGACGATTTTTTCACCATTCCAATGATGGGATTTGTTGAA
AGTATGAATGTTTCCGTCGCTGTTGCAACCACTGCGTGTTTAATCATGCA
TCGGGTTCATAGTTTGCTGCCATCACCTTCCTTTCTTCTTTCTGCTGAAC
AACGTAGACAATTGGCCCACACCTGGCTTACAAAGCGGCAACCACCGCAC
CCATGCCCAAAACTATTGCCCACCAAGCGTGATATGACCAGACTCGGTGT
GCGACAGGAGTCTACAATAATTTCGAATGGCCTCTTTTGCTCTGTTCAAG
ATGCATCGCTTTCTGATGCACAGTACTGGCAAGAAAAGCTCCGACTCGAT
GTGAATACTGGAATTCGCATTTCAAAATATCTCGCCAAGAGAAAATTTGG
TGCGTTAGGTGACAATGACTTTGGAAAGAGATGTCAAACAATTTGTGACG
GTCTGTCTGGCACTCATGCGCTCACTTACGAGGTGGTCCGACGTTCTGAG
AGATTTTCGACGACCAGAAAAGGCCTTTTTAATTACTTTAAGCGCTTGTG
CCAACGTGTCAGTGCTTCTTATCAACCTTACTTTGATAAGCGTGGCGTGC
CACTTCTCCCGCCCTTCGCGCCCGAATCGCAAGCTAAACTTGAACAGGTC
AGACTGGCAATTCCCAAAATATGTTACTCTGTCTGTCTCGATGCTGCTCG
CACTGAATGGGGTTTAAGCAAACAACAAGTTGATCGAATCATTGAGTCTA
CGAGAAGCCAGCATTATGCCCATTGCATCCTTGACACAATCCAGTGTAAC
GAACAAGTCAGACGTGCGCAATTCTTGGATTATGTGCGTCACGGAGCGAA
TCACTCACAGCGACAAGTGTACCAGCTCGTGAGCGGGCGGTATCCAGATG
GCACGCTCTTGAGTTTAGCCAGCGCTGTGCGTCTGGGTCACGAGTCTATA
TGCGAGTTTACCACCGTTGAAAAGGATGCCTTGCACGCATTCTTGCGACT
GTCGCAGGCAGCTTATATTTGCTCCGAAATTCACTTTGCAGTTTGGAGTC
GAGAATCAAAAGCCGATCATTTGCACAGGGTTCATTCGCCGCGATTCGGC
CTGCTGGAATCGGTTTTGTGTGATGCGTACTCAGATATGGTAATGCTGAA
CGCATCACAAGAAGTAGCAATTGCAAGACTGGTGTTCGAGTTCGATCAAG
TTCTTGCTCCATTGAAGCACCATCTTGCGGCAAACAGCGGGACACCTGTC
CGGTTCGAGGCCCAGAAAGGTTGTCTGACGCACGTATCTACCCTCGTGTA
A
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protein sequence of Gchil4090.t1

>Gchil4090.t1 ID=Gchil4090.t1|Name=Gchil4090.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=667bp
MTPSIDYPAFTSPLPLPIHNRPFQNQPPRSHTESTKCNLYHSTRTKRSPD
SAIPATPTSTTRTHLLNIRALHPDDARLFDALTPSRAQLFSRVLTNRTRH
FTFVLDGVQGAHNLAAIVRSCDAYGIQDLHILTNPYPQNNPNTHQQAAVQ
NMSVLQRFEHDQSVRQVSKGCHKWLTIAEHNAAHDCVKNLKQAGYRVIVS
SVSPSSKPLSSIDLSTKCAFVFGNERNGVTQLIMQHADDFFTIPMMGFVE
SMNVSVAVATTACLIMHRVHSLLPSPSFLLSAEQRRQLAHTWLTKRQPPH
PCPKLLPTKRDMTRLGVRQESTIISNGLFCSVQDASLSDAQYWQEKLRLD
VNTGIRISKYLAKRKFGALGDNDFGKRCQTICDGLSGTHALTYEVVRRSE
RFSTTRKGLFNYFKRLCQRVSASYQPYFDKRGVPLLPPFAPESQAKLEQV
RLAIPKICYSVCLDAARTEWGLSKQQVDRIIESTRSQHYAHCILDTIQCN
EQVRRAQFLDYVRHGANHSQRQVYQLVSGRYPDGTLLSLASAVRLGHESI
CEFTTVEKDALHAFLRLSQAAYICSEIHFAVWSRESKADHLHRVHSPRFG
LLESVLCDAYSDMVMLNASQEVAIARLVFEFDQVLAPLKHHLAANSGTPV
RFEAQKGCLTHVSTLV*
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mRNA from alignment at tig00004373_pilon:680212..682430-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4090.t1 ID=Gchil4090.t1|Name=Gchil4090.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2219bp|location=Sequence derived from alignment at tig00004373_pilon:680212..682430- (Gracilaria chilensis NLEC103_M9 male)
ATGACCCCCTCCATCGACTACCCCGCCTTCACGTCTCCCCTCCCACTGCC
TATCCACAATCGCCCCTTTCAAAACCAACCGCCCCGGTCCCACACCGAAT
CCACCAAATGTAATCTATACCATTCAACCCGAACAAAACGTTCACCCGAC
AGCGCAATCCCCGCAACCCCAACCTCCACGACGCGCACCCACCTCCTAAA
TATTCGCGCCTTACATCCAGATGACGCTCGTCTATTCGACGCTCTCACTC
CCTCAAGAGCTCAATTGTTTTCCCGTGTCTTGACCAATCGCACTCGACAC
TTTACCTTTGTCTTGGATGGTGTGCAAGGTGCACACAATCTGGCTGCCAT
TGTTCGTTCGTGTGATGCATATGGCATTCAAGATTTGCACATTTTAACAA
ATCCGTACCCACAAAACAACCCGAATACTCACCAACAAGCAGCCGTGCAA
AACATGTCCGTTCTCCAACGATTCGAACACGACCAAAGTGTGCGCCAAGT
AAGCAAAGGATGCCATAAGTGGCTCACTATAGCAGAACACAACGCCGCCC
ATGACTGTGTCAAAAACTTGAAACAAGCAGGGTATCGTGTTATTGTTTCT
TCTGTGTCCCCCTCTTCAAAGCCATTATCTTCTATAGACCTTTCTACCAA
GTGCGCTTTTGTTTTTGGCAATGAACGAAATGGAGTTACTCAACTTATAA
TGCAGCACGCTGACGATTTTTTCACCATTCCAATGATGGGATTTGTTGAA
AGTATGAATGTTTCCGTCGCTGTTGCAACCACTGCGTGTTTAATCATGCA
TCGGGTTCATAGTTTGCTGCCATCACCTTCCTTTCTTCTTTCTGCTGAAC
AACGTAGACAATTGGCCCACACCTGGCTTACAAAGCGGCAACCACCGCAC
CCATGCCCAAAACTATTGCCCACCAAGCGTGATATGACCAGACTCGGTGT
GCGACAGGAGTCTACAATAATTTCGAATGGCCTCTTTTGCTCTGTTCAAG
ATGCATCGCTTTCTGATGCACAGTACTGGCAAGAAAAGCTCCGACTCGAT
GTGAATACTGGAATTCGCATTTCAAAATATCTCGCCAAGAGAAAATTTGG
TGCGTTAGGTGACAATGACTTTGGAAAGAGATGTCAAACAATTTGTGACG
GTCTGTCTGGCACTCATGCGCTCACTTACGAGGTGGTCCGACGTTCTGAG
AGATTTTCGACGACCAGAAAAGGCCTTTTTAATTACTTTAAGCGCTTGTG
CCAACGTGTCAGTGCTTCTTATCAACCTTACTTTGATAAGCGTGGCGTGC
CACTTCTCCCGCCCTTCGCGCCCGAATCGCAAGCTAAACTTGAACAGGTC
AGACTGGCAATTCCCAAAATATGTTACTCTGTCTGTCTCGATGCTGCTCG
CACTGAATGGGGTTTAAGCAAACAACAAGTTGATCGAATCATTGAGTCTA
CGAGAAGCCAGCATTATGCCCATTGCATCCTTGACACAATCCAGTGTAAC
GAACAAGTCAGACGTGCGCAATTCTTGGATTATGTGCGTCACGGAGCGAA
TCACTCACAGCGACAAGTGTACCAGCTCGTGAGCGGGCGGTATCCAGATG
GCACGCTCTTGAGTTTAGCCAGCGCTGTGCGTCTGGGTCACGAGTCTATA
TGCGAGTTTACCACCGTTGAAAAGGATGCCTTGCACGCATTCTTGCGACT
GTCGCAGGCAGCTTATATTTGCTCCGAAATTCACTTTGCAGTTTGGAGTC
GAGAATCAAAAGCCGATCATTTGCACAGGGTTCATTCGCCGCGATTCGGC
CTGCTGGAATCGGTTTTGTGTGATGCGTACTCAGATATGGTAATGCTGAA
CGCATCACAAGAAGTAGCAATTGCAAGACTGGTGTTCGAGTTCGATCAAG
TTCTTGCTCCATTGAAGCACCATCTTGCGGCAAACAGCGGGACACCTGTC
CGGTTGTGAGTTTTTTTTGTCGTTCTGAGCAGAAACTTGTCAGTCTGCGA
AGGTATCGAAAGTTAGAAGTGCGACGCCATGATATGTTGTCATGACGAAT
ACTTGCGGTGCTTTCAAACACGCAGCGAGGCCCAGAAAGGTTGTCTGGTG
AGTAGAAAGAAATCGTTTTGTTGTTTAGTGCTCAAAGTGAAGGAAAGTGA
CTACCAAGTAACGTTACTGACATCGCGACTGGAAATTTCCATGAGACGCA
CGTATCTACCCTCGTGTAA
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Coding sequence (CDS) from alignment at tig00004373_pilon:680212..682430-

>Gchil4090.t1 ID=Gchil4090.t1|Name=Gchil4090.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2001bp|location=Sequence derived from alignment at tig00004373_pilon:680212..682430- (Gracilaria chilensis NLEC103_M9 male)
ATGACCCCCTCCATCGACTACCCCGCCTTCACGTCTCCCCTCCCACTGCC
TATCCACAATCGCCCCTTTCAAAACCAACCGCCCCGGTCCCACACCGAAT
CCACCAAATGTAATCTATACCATTCAACCCGAACAAAACGTTCACCCGAC
AGCGCAATCCCCGCAACCCCAACCTCCACGACGCGCACCCACCTCCTAAA
TATTCGCGCCTTACATCCAGATGACGCTCGTCTATTCGACGCTCTCACTC
CCTCAAGAGCTCAATTGTTTTCCCGTGTCTTGACCAATCGCACTCGACAC
TTTACCTTTGTCTTGGATGGTGTGCAAGGTGCACACAATCTGGCTGCCAT
TGTTCGTTCGTGTGATGCATATGGCATTCAAGATTTGCACATTTTAACAA
ATCCGTACCCACAAAACAACCCGAATACTCACCAACAAGCAGCCGTGCAA
AACATGTCCGTTCTCCAACGATTCGAACACGACCAAAGTGTGCGCCAAGT
AAGCAAAGGATGCCATAAGTGGCTCACTATAGCAGAACACAACGCCGCCC
ATGACTGTGTCAAAAACTTGAAACAAGCAGGGTATCGTGTTATTGTTTCT
TCTGTGTCCCCCTCTTCAAAGCCATTATCTTCTATAGACCTTTCTACCAA
GTGCGCTTTTGTTTTTGGCAATGAACGAAATGGAGTTACTCAACTTATAA
TGCAGCACGCTGACGATTTTTTCACCATTCCAATGATGGGATTTGTTGAA
AGTATGAATGTTTCCGTCGCTGTTGCAACCACTGCGTGTTTAATCATGCA
TCGGGTTCATAGTTTGCTGCCATCACCTTCCTTTCTTCTTTCTGCTGAAC
AACGTAGACAATTGGCCCACACCTGGCTTACAAAGCGGCAACCACCGCAC
CCATGCCCAAAACTATTGCCCACCAAGCGTGATATGACCAGACTCGGTGT
GCGACAGGAGTCTACAATAATTTCGAATGGCCTCTTTTGCTCTGTTCAAG
ATGCATCGCTTTCTGATGCACAGTACTGGCAAGAAAAGCTCCGACTCGAT
GTGAATACTGGAATTCGCATTTCAAAATATCTCGCCAAGAGAAAATTTGG
TGCGTTAGGTGACAATGACTTTGGAAAGAGATGTCAAACAATTTGTGACG
GTCTGTCTGGCACTCATGCGCTCACTTACGAGGTGGTCCGACGTTCTGAG
AGATTTTCGACGACCAGAAAAGGCCTTTTTAATTACTTTAAGCGCTTGTG
CCAACGTGTCAGTGCTTCTTATCAACCTTACTTTGATAAGCGTGGCGTGC
CACTTCTCCCGCCCTTCGCGCCCGAATCGCAAGCTAAACTTGAACAGGTC
AGACTGGCAATTCCCAAAATATGTTACTCTGTCTGTCTCGATGCTGCTCG
CACTGAATGGGGTTTAAGCAAACAACAAGTTGATCGAATCATTGAGTCTA
CGAGAAGCCAGCATTATGCCCATTGCATCCTTGACACAATCCAGTGTAAC
GAACAAGTCAGACGTGCGCAATTCTTGGATTATGTGCGTCACGGAGCGAA
TCACTCACAGCGACAAGTGTACCAGCTCGTGAGCGGGCGGTATCCAGATG
GCACGCTCTTGAGTTTAGCCAGCGCTGTGCGTCTGGGTCACGAGTCTATA
TGCGAGTTTACCACCGTTGAAAAGGATGCCTTGCACGCATTCTTGCGACT
GTCGCAGGCAGCTTATATTTGCTCCGAAATTCACTTTGCAGTTTGGAGTC
GAGAATCAAAAGCCGATCATTTGCACAGGGTTCATTCGCCGCGATTCGGC
CTGCTGGAATCGGTTTTGTGTGATGCGTACTCAGATATGGTAATGCTGAA
CGCATCACAAGAAGTAGCAATTGCAAGACTGGTGTTCGAGTTCGATCAAG
TTCTTGCTCCATTGAAGCACCATCTTGCGGCAAACAGCGGGACACCTGTC
CGGTTCGAGGCCCAGAAAGGTTGTCTGACGCACGTATCTACCCTCGTGTA
A
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