Gchil4087.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4087.t1
Unique NameGchil4087.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length199
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:624119..626370 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4087Gchil4087Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 624119..626370 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4087.t1Gchil4087.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 624119..626370 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4087.t1.start1Gchil4087.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 624119..624121 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4087.t1.CDS1Gchil4087.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 624119..624164 +
Gchil4087.t1.CDS2Gchil4087.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 624280..624338 +
Gchil4087.t1.CDS3Gchil4087.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 625094..625217 +
Gchil4087.t1.CDS4Gchil4087.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 626003..626370 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4087.t1.exon1Gchil4087.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 624119..624164 +
Gchil4087.t1.exon2Gchil4087.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 624280..624338 +
Gchil4087.t1.exon3Gchil4087.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 625094..625217 +
Gchil4087.t1.exon4Gchil4087.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 626003..626370 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4087.t1.intron1Gchil4087.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 624165..624279 +
Gchil4087.t1.intron2Gchil4087.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 624339..625093 +
Gchil4087.t1.intron3Gchil4087.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 625218..626002 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4087.t1.stop1Gchil4087.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 626368..626370 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4087.t1 ID=Gchil4087.t1|Name=Gchil4087.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=199bp
MLTLMTRFLISSIFERRLPYGPSQCLRVQPLGNRTLKYEVMIGSRRVMLC
IVGLHNEFDTQIWKVYEGHEASYPGLIANGVSGVNTGFSKEGVKSASTAL
LNSYSSAIAVKIGIKVVELDESVTSAGDGGLSNAAGILQLDAAMMTSKGK
MDPSQHRRAIVQQSISPMPCSTIQHIPLWSEMTQLCSPNCTGFLREVI*
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spliced messenger RNA

>Gchil4087.t1 ID=Gchil4087.t1|Name=Gchil4087.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=597bp|location=Sequence derived from alignment at tig00004373_pilon:624119..626370+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGACGTTGATGACACGCTTCTTGATTTCCTCAATCTTCGAAAgacg
gcttccttacggaccttctcaatgccttcgagttcagcctttggggaatc
gcactCTCAAATATGAAGTCATGATTGGTTCCAGGCGGGTGATGCTATGT
ATTGTTGGACTGCACAATGAGTTTGATACGCAGATATGGAAAGTGTATGA
GGGTCATGAGGCTAGCTACCCTGGCTTAATTGCAAATGGCGTCAGTGGAG
TCAACACGGGGTTTTCCAAGGAAGGCGTTAAATCCGCGTCTACTGCGCTT
TTGAACTCATATTCCTCAGCAATAGCTGTCAAAATTGGGATCAAGGTTGT
TGAACTGGACGAAAGTGTTACCTCAGCTGGTGACGGTGGTCTCTCAAATG
CTGCCGGAATTCTACAACTCGACGCAGCCATGATGACTTCCAAAGGAAAA
ATGGATCCGTCACAACACCGACGGGCTATTGTTCAGCAATCGATTTCGCC
CATGCCGTGCTCTACCATTCAACACATCCCATTATGGTCGGAGATGACGC
AGCTTTGCTCGCCCAACTGCACGGGTTTCTTGCGAGAAGTGATTTAA
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protein sequence of Gchil4087.t1

>Gchil4087.t1 ID=Gchil4087.t1|Name=Gchil4087.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=199bp
MLTLMTRFLISSIFERRLPYGPSQCLRVQPLGNRTLKYEVMIGSRRVMLC
IVGLHNEFDTQIWKVYEGHEASYPGLIANGVSGVNTGFSKEGVKSASTAL
LNSYSSAIAVKIGIKVVELDESVTSAGDGGLSNAAGILQLDAAMMTSKGK
MDPSQHRRAIVQQSISPMPCSTIQHIPLWSEMTQLCSPNCTGFLREVI*
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mRNA from alignment at tig00004373_pilon:624119..626370+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4087.t1 ID=Gchil4087.t1|Name=Gchil4087.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2252bp|location=Sequence derived from alignment at tig00004373_pilon:624119..626370+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTGACGTTGATGACACGCTTCTTGATTTCCTCAATCTTCGAAAGTAA
GTTTTGCTTTCCCTCTTGAGCTCTGGAGCGGTGTTCCAGAACTTTGTCAT
GGTAtccacctgcgttcccgttgtattcacgactctttcttgatatatct
gctgctttcaggacggcttccttacggaccttctcaatgccttcgagttc
agcctttggggaatcgcactgtgtgcacttttcattgctcctctctgcac
gtttctgagcttcattcagagtttgcttgacagtcttggccctcacatca
gctttctttatgtcatcacgtagctcagcgacatcgcgacttgcttggta
gactttttctgcctcatggcttgccttgagagctagctggccagaatcag
ccacagacgagatgacagcttccgcttgtttctcgatatcatccttctcc
tgttgggtcatttggtttctggatgattcaatattcctcagagcatcatt
tacggcaatgatatcggattcaatcgctgctacagtttcatacgcttcca
tagccaaggtataagcttcgtcatttgcactgatgatggcagtgtacatg
ttctctacagcctcggttgtgtccattacgtgatcaaatgtggtacacac
tgcatttgagtcgatgagaataagatggcacccgaacaaatcagtgccac
ttggaacgacatctttgttcttggagtaaattgagcatggagatcgcttg
cacatttcataccccagacagtcacatcgatatgaaggcgtgcatgcttc
catggagcacatgttgtttcctttgtgtttgacgcatgtaccggggccct
gcatctgagcacaagggcaggaagtctccgtcatcacacatgccccagcc
tcaccTGGTTCGGTAGACTGTCCATGGACCAAAACAGCAATCCCAAACGT
ATACATAATACCAACGACGAACAAGCTCAAATATGAAGTCATGATTGGTT
CCAGGCGGGTGATGCTATGTATTGTTGGACTGCACAATGAGTTTGATACG
CAGATATGGAAAGTGTATGAGGGTCATGAGGCTAGCTACCCTGGCTTAAG
TATGCAAAATCTGTTCACAATTTGGGTGAAGATGAGATGATTGATTCGAA
GCATTCTTCGCAGTTGTCTTTGTGAAAATCAGTGACGCAATGTGACGAAG
AGATCTTGCCCCTGTTAGTCTCGGGTCTTGAGGGAGGAGAACGAAGGTTG
GAGCCAAGTCGATGGACAGCGTGTTTAATTCGAAAGTGCTTAGCGCGATT
CGTCACTTTGCGCCCGCTGAATGTACCCTTGTAACCCTTACTGTTGTAAC
CTACGTGATGGTGAAATGAACAGCGCGCCAGCACTTCAATTTTATGAAAC
TGGGAGCGAGTGTAGCTGGGCGGACCCACGACCAGTTCTCATGCGGTCCT
CACACAAAATAATGGTTAAAAACGAAGGCAATCTCCCGTGTTACCGTCGG
TACTCAAGTATCTCTTTAGTAATAGCATATTCACAAGAGATATGTACAAT
ATCGCGAGCGATGAAACGCTTCTTATCGGATGACGCATACCTGCCAGGAT
CTTCTGATGGCAACGTACGGTTTCATCGAAATCAACATTTATCTAAACCT
CTGGACGACATTTGATTAAATCGTTGGCGAAGAAGTACTAAGTAAGGAAC
GGGAGTGCTGTTTGTCGTGAGGGGCAAGAGACAAAGTGTATTTTCGGCTC
TTGCCCGTAGGACGTATGTGTAGTACTGGCAAATCGAATGATCGACGTGC
GCTGTAGAAAGTAATCTGGAAATCAGAACGAGGGAATATTTCGCTTTGAA
GACCTGGTTATAAACCAATTTCTTGCATGAGTAGTTGCAAATGGCGTCAG
TGGAGTCAACACGGGGTTTTCCAAGGAAGGCGTTAAATCCGCGTCTACTG
CGCTTTTGAACTCATATTCCTCAGCAATAGCTGTCAAAATTGGGATCAAG
GTTGTTGAACTGGACGAAAGTGTTACCTCAGCTGGTGACGGTGGTCTCTC
AAATGCTGCCGGAATTCTACAACTCGACGCAGCCATGATGACTTCCAAAG
GAAAAATGGATCCGTCACAACACCGACGGGCTATTGTTCAGCAATCGATT
TCGCCCATGCCGTGCTCTACCATTCAACACATCCCATTATGGTCGGAGAT
GACGCAGCTTTGCTCGCCCAACTGCACGGGTTTCTTGCGAGAAGTGATTT
AA
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Coding sequence (CDS) from alignment at tig00004373_pilon:624119..626370+

>Gchil4087.t1 ID=Gchil4087.t1|Name=Gchil4087.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=597bp|location=Sequence derived from alignment at tig00004373_pilon:624119..626370+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTGACGTTGATGACACGCTTCTTGATTTCCTCAATCTTCGAAAgacg
gcttccttacggaccttctcaatgccttcgagttcagcctttggggaatc
gcactCTCAAATATGAAGTCATGATTGGTTCCAGGCGGGTGATGCTATGT
ATTGTTGGACTGCACAATGAGTTTGATACGCAGATATGGAAAGTGTATGA
GGGTCATGAGGCTAGCTACCCTGGCTTAATTGCAAATGGCGTCAGTGGAG
TCAACACGGGGTTTTCCAAGGAAGGCGTTAAATCCGCGTCTACTGCGCTT
TTGAACTCATATTCCTCAGCAATAGCTGTCAAAATTGGGATCAAGGTTGT
TGAACTGGACGAAAGTGTTACCTCAGCTGGTGACGGTGGTCTCTCAAATG
CTGCCGGAATTCTACAACTCGACGCAGCCATGATGACTTCCAAAGGAAAA
ATGGATCCGTCACAACACCGACGGGCTATTGTTCAGCAATCGATTTCGCC
CATGCCGTGCTCTACCATTCAACACATCCCATTATGGTCGGAGATGACGC
AGCTTTGCTCGCCCAACTGCACGGGTTTCTTGCGAGAAGTGATTTAA
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