Gchil4085.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4085.t1
Unique Name	Gchil4085.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	579

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:620729..622465 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	112098.XP_008613356.1
PFAMs	DNA_photolyase
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01669
Evalue	2.21e-129
EggNOG OGs	COG0415@1\|root,KOG0133@2759\|Eukaryota
EC	4.1.99.3
Description	DNA photolyase activity
COG category	L
BRITE	ko00000,ko01000,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4085	Gchil4085	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 620729..622465 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4085.t1.start1	Gchil4085.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 620729..620731 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4085.t1.CDS1	Gchil4085.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 620729..622465 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4085.t1.exon1	Gchil4085.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 620729..622465 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4085.t1.stop1	Gchil4085.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 622463..622465 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4085.t1	Gchil4085.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 620729..622465 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:620729..622465+
coding sequence from alignment at tig00004373_pilon:620729..622465+

mRNA sequence

>Gchil4085.t1 ID=Gchil4085.t1|Name=Gchil4085.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=579bp
MIWSFISPFVSNSRSLLVPQKAFTVKTTRFTRVTKRRVSMTTTSSPAAAS
RVHTLNSNDSNKSGTFVLYWMSNSVRTRYNFALGHAIYLCEKYQKPLRVA
HVFDTVAQDGQPLPERHAAFQLESLLDVEQDLRQQSIPFAVIEPGHDTCN
TITALAAQAAVVVTDTSYLRLGRADREAVASSIKVPLHVVEADVVVPVEE
ASNKSEYAARTIRPKITRALKEFLVPMKEIDLTQQSMCDVKGWIKSVGPD
LHLLDLSDLDAALKHMDGIDRGAPRVSFFRGGQREAESRLETFVTKRLRE
YGSGRNEPAKQLQSDLSPFLRAGNISPIDIALRTKESAAKKSSMKESEES
FLEELIVRRELAVNACWFNPKGYDKYEQIVPNFAKESLALHQSDKRPKIH
TYDELEAALTSDPFWNAAQLEMIVRGKMHGYMRMYWVKRIIGWVGNPEDA
MDYALRLNNRWELDAVDPNSYTGVIWCFGLHDRGWTERPIWGKVRYMNES
GLKRKFNMDAYIAHVDEMVAKEGLPAHIAELRQKNGKGKRQQTIEGTRKR
RITSNNSANTSKAQKRVKAKTVSKKKKT*

spliced messenger RNA

>Gchil4085.t1 ID=Gchil4085.t1|Name=Gchil4085.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1737bp|location=Sequence derived from alignment at tig00004373_pilon:620729..622465+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCTGGTCTTTCATCAGCCCGTTCGTCTCCAATTCACGCTCGCTCCT
TGTTCCTCAGAAGGCGTTTACCGTAAAGACGACCCGGTTCACCAGGGTAA
CCAAAAGGCGCGTCTCTATGACAACCACATCATCTCCAGCCGCAGCTTCC
CGAGTTCATACTCTGAACTCTAATGACTCCAACAAGTCCGGCACATTCGT
CCTTTACTGGATGTCCAACTCAGTGCGCACGCGCTACAATTTTGCCCTCG
GGCATGCGATCTATCTTTGTGAAAAATATCAGAAACCTTTGAGAGTTGCC
CATGTCTTTGACACCGTTGCGCAAGATGGACAGCCGCTTCCCGAGCGGCA
TGCGGCATTTCAGTTAGAGAGTCTTTTGGATGTCGAGCAAGACCTGCGGC
AGCAATCAATCCCATTTGCTGTAATTGAGCCAGGGCATGACACATGCAAT
ACGATTACTGCATTGGCTGCGCAAGCCGCCGTGGTCGTCACGGATACTTC
TTATCTTCGTCTCGGCAGAGCAGATAGAGAGGCAGTTGCGTCCTCCATAA
AGGTTCCTCTTCATGTCGTTGAGGCTGACGTGGTCGTCCCTGTCGAGGAA
GCATCAAACAAATCTGAATACGCGGCCCGAACAATTCGCCCAAAGATAAC
TCGGGCTCTGAAAGAATTTCTAGTCCCCATGAAGGAAATTGACCTTACTC
AGCAATCAATGTGCGATGTAAAAGGCTGGATAAAATCTGTTGGTCCTGAT
CTGCACTTACTTGATTTGAGCGACTTAGACGCAGCGCTCAAGCACATGGA
CGGGATAGATCGCGGTGCTCCGCGAGTGAGCTTCTTCCGTGGCGGTCAGA
GAGAAGCGGAATCCCGTCTAGAAACATTTGTCACAAAACGGCTGAGAGAA
TACGGTTCGGGGCGAAATGAACCAGCGAAACAGTTACAATCGGATCTTAG
TCCTTTTCTTCGAGCAGGAAACATATCACCGATAGATATTGCATTGCGAA
CGAAGGAAAGTGCGGCAAAAAAATCATCTATGAAGGAAAGTGAAGAATCC
TTCTTGGAAGAGCTTATCGTGCGTCGTGAGCTAGCCGTAAATGCTTGTTG
GTTCAATCCAAAGGGTTATGACAAATACGAACAGATTGTTCCCAATTTTG
CTAAAGAATCTCTTGCTTTACACCAGAGCGACAAGAGACCAAAGATACAC
ACTTACGACGAACTCGAAGCAGCTTTGACATCAGACCCATTCTGGAACGC
CGCCCAGCTTGAAATGATTGTCAGAGGGAAAATGCACGGATACATGAGAA
TGTACTGGGTGAAACGAATCATTGGATGGGTCGGGAACCCTGAGGATGCT
ATGGACTATGCCCTGCGACTAAATAACAGATGGGAGTTGGATGCGGTGGA
CCCAAACTCGTACACCGGGGTAATCTGGTGTTTTGGACTTCATGATCGCG
GGTGGACAGAACGACCGATATGGGGGAAGGTGAGGTACATGAACGAGAGC
GGTTTAAAACGGAAGTTCAACATGGATGCATACATTGCCCATGTGGACGA
AATGGTCGCCAAAGAAGGACTTCCAGCTCACATTGCGGAACTCAGGCAAA
AAAATGGAAAGGGGAAACGACAACAAACGATAGAAGGTACTCGTAAACGT
CGCATCACAAGCAACAACTCCGCTAACACTTCAAAAGCCCAGAAGCGCGT
GAAAGCTAAAACTGTCTCCAAAAAAAAGAAAACATGA

protein sequence of Gchil4085.t1

>Gchil4085.t1 ID=Gchil4085.t1|Name=Gchil4085.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=579bp
MIWSFISPFVSNSRSLLVPQKAFTVKTTRFTRVTKRRVSMTTTSSPAAAS
RVHTLNSNDSNKSGTFVLYWMSNSVRTRYNFALGHAIYLCEKYQKPLRVA
HVFDTVAQDGQPLPERHAAFQLESLLDVEQDLRQQSIPFAVIEPGHDTCN
TITALAAQAAVVVTDTSYLRLGRADREAVASSIKVPLHVVEADVVVPVEE
ASNKSEYAARTIRPKITRALKEFLVPMKEIDLTQQSMCDVKGWIKSVGPD
LHLLDLSDLDAALKHMDGIDRGAPRVSFFRGGQREAESRLETFVTKRLRE
YGSGRNEPAKQLQSDLSPFLRAGNISPIDIALRTKESAAKKSSMKESEES
FLEELIVRRELAVNACWFNPKGYDKYEQIVPNFAKESLALHQSDKRPKIH
TYDELEAALTSDPFWNAAQLEMIVRGKMHGYMRMYWVKRIIGWVGNPEDA
MDYALRLNNRWELDAVDPNSYTGVIWCFGLHDRGWTERPIWGKVRYMNES
GLKRKFNMDAYIAHVDEMVAKEGLPAHIAELRQKNGKGKRQQTIEGTRKR
RITSNNSANTSKAQKRVKAKTVSKKKKT*

mRNA from alignment at tig00004373_pilon:620729..622465+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4085.t1 ID=Gchil4085.t1|Name=Gchil4085.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1737bp|location=Sequence derived from alignment at tig00004373_pilon:620729..622465+ (Gracilaria chilensis NLEC103_M9 male)
ATGATCTGGTCTTTCATCAGCCCGTTCGTCTCCAATTCACGCTCGCTCCT
TGTTCCTCAGAAGGCGTTTACCGTAAAGACGACCCGGTTCACCAGGGTAA
CCAAAAGGCGCGTCTCTATGACAACCACATCATCTCCAGCCGCAGCTTCC
CGAGTTCATACTCTGAACTCTAATGACTCCAACAAGTCCGGCACATTCGT
CCTTTACTGGATGTCCAACTCAGTGCGCACGCGCTACAATTTTGCCCTCG
GGCATGCGATCTATCTTTGTGAAAAATATCAGAAACCTTTGAGAGTTGCC
CATGTCTTTGACACCGTTGCGCAAGATGGACAGCCGCTTCCCGAGCGGCA
TGCGGCATTTCAGTTAGAGAGTCTTTTGGATGTCGAGCAAGACCTGCGGC
AGCAATCAATCCCATTTGCTGTAATTGAGCCAGGGCATGACACATGCAAT
ACGATTACTGCATTGGCTGCGCAAGCCGCCGTGGTCGTCACGGATACTTC
TTATCTTCGTCTCGGCAGAGCAGATAGAGAGGCAGTTGCGTCCTCCATAA
AGGTTCCTCTTCATGTCGTTGAGGCTGACGTGGTCGTCCCTGTCGAGGAA
GCATCAAACAAATCTGAATACGCGGCCCGAACAATTCGCCCAAAGATAAC
TCGGGCTCTGAAAGAATTTCTAGTCCCCATGAAGGAAATTGACCTTACTC
AGCAATCAATGTGCGATGTAAAAGGCTGGATAAAATCTGTTGGTCCTGAT
CTGCACTTACTTGATTTGAGCGACTTAGACGCAGCGCTCAAGCACATGGA
CGGGATAGATCGCGGTGCTCCGCGAGTGAGCTTCTTCCGTGGCGGTCAGA
GAGAAGCGGAATCCCGTCTAGAAACATTTGTCACAAAACGGCTGAGAGAA
TACGGTTCGGGGCGAAATGAACCAGCGAAACAGTTACAATCGGATCTTAG
TCCTTTTCTTCGAGCAGGAAACATATCACCGATAGATATTGCATTGCGAA
CGAAGGAAAGTGCGGCAAAAAAATCATCTATGAAGGAAAGTGAAGAATCC
TTCTTGGAAGAGCTTATCGTGCGTCGTGAGCTAGCCGTAAATGCTTGTTG
GTTCAATCCAAAGGGTTATGACAAATACGAACAGATTGTTCCCAATTTTG
CTAAAGAATCTCTTGCTTTACACCAGAGCGACAAGAGACCAAAGATACAC
ACTTACGACGAACTCGAAGCAGCTTTGACATCAGACCCATTCTGGAACGC
CGCCCAGCTTGAAATGATTGTCAGAGGGAAAATGCACGGATACATGAGAA
TGTACTGGGTGAAACGAATCATTGGATGGGTCGGGAACCCTGAGGATGCT
ATGGACTATGCCCTGCGACTAAATAACAGATGGGAGTTGGATGCGGTGGA
CCCAAACTCGTACACCGGGGTAATCTGGTGTTTTGGACTTCATGATCGCG
GGTGGACAGAACGACCGATATGGGGGAAGGTGAGGTACATGAACGAGAGC
GGTTTAAAACGGAAGTTCAACATGGATGCATACATTGCCCATGTGGACGA
AATGGTCGCCAAAGAAGGACTTCCAGCTCACATTGCGGAACTCAGGCAAA
AAAATGGAAAGGGGAAACGACAACAAACGATAGAAGGTACTCGTAAACGT
CGCATCACAAGCAACAACTCCGCTAACACTTCAAAAGCCCAGAAGCGCGT
GAAAGCTAAAACTGTCTCCAAAAAAAAGAAAACATGA

Coding sequence (CDS) from alignment at tig00004373_pilon:620729..622465+

>Gchil4085.t1 ID=Gchil4085.t1|Name=Gchil4085.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1737bp|location=Sequence derived from alignment at tig00004373_pilon:620729..622465+ (Gracilaria chilensis NLEC103_M9 male)
ATGATCTGGTCTTTCATCAGCCCGTTCGTCTCCAATTCACGCTCGCTCCT
TGTTCCTCAGAAGGCGTTTACCGTAAAGACGACCCGGTTCACCAGGGTAA
CCAAAAGGCGCGTCTCTATGACAACCACATCATCTCCAGCCGCAGCTTCC
CGAGTTCATACTCTGAACTCTAATGACTCCAACAAGTCCGGCACATTCGT
CCTTTACTGGATGTCCAACTCAGTGCGCACGCGCTACAATTTTGCCCTCG
GGCATGCGATCTATCTTTGTGAAAAATATCAGAAACCTTTGAGAGTTGCC
CATGTCTTTGACACCGTTGCGCAAGATGGACAGCCGCTTCCCGAGCGGCA
TGCGGCATTTCAGTTAGAGAGTCTTTTGGATGTCGAGCAAGACCTGCGGC
AGCAATCAATCCCATTTGCTGTAATTGAGCCAGGGCATGACACATGCAAT
ACGATTACTGCATTGGCTGCGCAAGCCGCCGTGGTCGTCACGGATACTTC
TTATCTTCGTCTCGGCAGAGCAGATAGAGAGGCAGTTGCGTCCTCCATAA
AGGTTCCTCTTCATGTCGTTGAGGCTGACGTGGTCGTCCCTGTCGAGGAA
GCATCAAACAAATCTGAATACGCGGCCCGAACAATTCGCCCAAAGATAAC
TCGGGCTCTGAAAGAATTTCTAGTCCCCATGAAGGAAATTGACCTTACTC
AGCAATCAATGTGCGATGTAAAAGGCTGGATAAAATCTGTTGGTCCTGAT
CTGCACTTACTTGATTTGAGCGACTTAGACGCAGCGCTCAAGCACATGGA
CGGGATAGATCGCGGTGCTCCGCGAGTGAGCTTCTTCCGTGGCGGTCAGA
GAGAAGCGGAATCCCGTCTAGAAACATTTGTCACAAAACGGCTGAGAGAA
TACGGTTCGGGGCGAAATGAACCAGCGAAACAGTTACAATCGGATCTTAG
TCCTTTTCTTCGAGCAGGAAACATATCACCGATAGATATTGCATTGCGAA
CGAAGGAAAGTGCGGCAAAAAAATCATCTATGAAGGAAAGTGAAGAATCC
TTCTTGGAAGAGCTTATCGTGCGTCGTGAGCTAGCCGTAAATGCTTGTTG
GTTCAATCCAAAGGGTTATGACAAATACGAACAGATTGTTCCCAATTTTG
CTAAAGAATCTCTTGCTTTACACCAGAGCGACAAGAGACCAAAGATACAC
ACTTACGACGAACTCGAAGCAGCTTTGACATCAGACCCATTCTGGAACGC
CGCCCAGCTTGAAATGATTGTCAGAGGGAAAATGCACGGATACATGAGAA
TGTACTGGGTGAAACGAATCATTGGATGGGTCGGGAACCCTGAGGATGCT
ATGGACTATGCCCTGCGACTAAATAACAGATGGGAGTTGGATGCGGTGGA
CCCAAACTCGTACACCGGGGTAATCTGGTGTTTTGGACTTCATGATCGCG
GGTGGACAGAACGACCGATATGGGGGAAGGTGAGGTACATGAACGAGAGC
GGTTTAAAACGGAAGTTCAACATGGATGCATACATTGCCCATGTGGACGA
AATGGTCGCCAAAGAAGGACTTCCAGCTCACATTGCGGAACTCAGGCAAA
AAAATGGAAAGGGGAAACGACAACAAACGATAGAAGGTACTCGTAAACGT
CGCATCACAAGCAACAACTCCGCTAACACTTCAAAAGCCCAGAAGCGCGT
GAAAGCTAAAACTGTCTCCAAAAAAAAGAAAACATGA