Gchil4084.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4084.t1
Unique NameGchil4084.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length271
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:619506..620318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog70448.A0A090N337
PFAMs2OG-FeII_Oxy_3
Max annot lvl3041|Chlorophyta
KEGG rclassRC00478
KEGG koko:K00472,ko:K19720
KEGG ReactionR01252
KEGG Pathwayko00330,ko01100,ko04611,ko04926,ko04933,ko04974,ko05146,map00330,map01100,map04611,map04926,map04933,map04974,map05146
Evalue5.08e-08
EggNOG OGsKOG1591@1|root,KOG1591@2759|Eukaryota,3808Q@33090|Viridiplantae,34KRP@3041|Chlorophyta
EC1.14.11.2
Descriptionprocollagen-proline 4-dioxygenase activity
COG categoryS
BRITEko00000,ko00001,ko00536,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4084Gchil4084Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 619506..620318 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4084.t1.stop1Gchil4084.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 619506..619508 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4084.t1.CDS1Gchil4084.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 619506..620318 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4084.t1.exon1Gchil4084.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 619506..620318 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4084.t1.start1Gchil4084.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 620316..620318 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4084.t1Gchil4084.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 619506..620318 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4084.t1 ID=Gchil4084.t1|Name=Gchil4084.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=271bp
MIGCSPRLAFTTSVVLAKTHHARDNIRKQRKASLWMALPKNHALQQSVAE
WGLTIDPQDDFDSISSLNVQPPLLRVPDLLTPAQCDALIAAQSTNAFESE
LYLNYRLNTNSGTQSCGFRTNVAPNEPSFQPILEQIHKVLGFTNRSFVFA
EQLWTRPTKRTVVIRDATTVRYKPGEGVPAHVDGNDCTVLICLQEPKRGG
RTIFPNDGVYVEQMRGSALIYHSKHKLLHFAEEVEDGTKWVLQLLIDFTI
RPDEPDVDIDYTTGRVKIAS*
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spliced messenger RNA

>Gchil4084.t1 ID=Gchil4084.t1|Name=Gchil4084.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=813bp|location=Sequence derived from alignment at tig00004373_pilon:619506..620318- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGGATGCAGTCCACGGCTAGCCTTTACAACCTCAGTAGTTCTTGC
AAAAACCCATCATGCTCGAGACAACATCAGAAAACAAAGGAAGGCATCGT
TGTGGATGGCACTGCCCAAAAACCACGCCCTGCAGCAGAGTGTAGCGGAA
TGGGGGCTAACTATCGATCCGCAGGACGACTTTGATTCAATATCCTCGCT
CAATGTTCAACCTCCCTTGCTCCGTGTACCAGACTTGCTCACACCTGCTC
AATGCGATGCACTTATCGCCGCTCAAAGCACCAATGCATTCGAATCAGAA
CTCTATCTCAACTACCGTCTCAACACCAATTCTGGCACTCAAAGCTGCGG
ATTTCGCACAAATGTCGCGCCCAATGAACCTTCATTTCAGCCTATTTTGG
AACAGATCCACAAAGTGCTCGGGTTCACGAACCGTTCGTTTGTGTTCGCT
GAGCAGCTTTGGACGCGACCAACAAAACGCACTGTGGTGATTCGCGATGC
CACTACGGTGCGTTACAAACCCGGAGAAGGAGTACCAGCTCATGTTGATG
GAAATGATTGCACCGTGCTTATTTGCCTTCAGGAACCGAAGCGAGGAGGG
CGTACAATCTTTCCGAATGACGGCGTGTATGTTGAGCAGATGCGCGGTTC
TGCTTTGATCTATCATAGCAAACACAAATTGCTGCACTTTGCTGAGGAGG
TTGAAGACGGTACAAAGTGGGTGCTTCAACTCCTTATTGACTTTACGATT
CGTCCCGATGAACCAGATGTAGATATAGACTACACCACGGGTCGGGTCAA
AATCGCTTCGTGA
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protein sequence of Gchil4084.t1

>Gchil4084.t1 ID=Gchil4084.t1|Name=Gchil4084.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=271bp
MIGCSPRLAFTTSVVLAKTHHARDNIRKQRKASLWMALPKNHALQQSVAE
WGLTIDPQDDFDSISSLNVQPPLLRVPDLLTPAQCDALIAAQSTNAFESE
LYLNYRLNTNSGTQSCGFRTNVAPNEPSFQPILEQIHKVLGFTNRSFVFA
EQLWTRPTKRTVVIRDATTVRYKPGEGVPAHVDGNDCTVLICLQEPKRGG
RTIFPNDGVYVEQMRGSALIYHSKHKLLHFAEEVEDGTKWVLQLLIDFTI
RPDEPDVDIDYTTGRVKIAS*
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mRNA from alignment at tig00004373_pilon:619506..620318-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4084.t1 ID=Gchil4084.t1|Name=Gchil4084.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=813bp|location=Sequence derived from alignment at tig00004373_pilon:619506..620318- (Gracilaria chilensis NLEC103_M9 male)
ATGATCGGATGCAGTCCACGGCTAGCCTTTACAACCTCAGTAGTTCTTGC
AAAAACCCATCATGCTCGAGACAACATCAGAAAACAAAGGAAGGCATCGT
TGTGGATGGCACTGCCCAAAAACCACGCCCTGCAGCAGAGTGTAGCGGAA
TGGGGGCTAACTATCGATCCGCAGGACGACTTTGATTCAATATCCTCGCT
CAATGTTCAACCTCCCTTGCTCCGTGTACCAGACTTGCTCACACCTGCTC
AATGCGATGCACTTATCGCCGCTCAAAGCACCAATGCATTCGAATCAGAA
CTCTATCTCAACTACCGTCTCAACACCAATTCTGGCACTCAAAGCTGCGG
ATTTCGCACAAATGTCGCGCCCAATGAACCTTCATTTCAGCCTATTTTGG
AACAGATCCACAAAGTGCTCGGGTTCACGAACCGTTCGTTTGTGTTCGCT
GAGCAGCTTTGGACGCGACCAACAAAACGCACTGTGGTGATTCGCGATGC
CACTACGGTGCGTTACAAACCCGGAGAAGGAGTACCAGCTCATGTTGATG
GAAATGATTGCACCGTGCTTATTTGCCTTCAGGAACCGAAGCGAGGAGGG
CGTACAATCTTTCCGAATGACGGCGTGTATGTTGAGCAGATGCGCGGTTC
TGCTTTGATCTATCATAGCAAACACAAATTGCTGCACTTTGCTGAGGAGG
TTGAAGACGGTACAAAGTGGGTGCTTCAACTCCTTATTGACTTTACGATT
CGTCCCGATGAACCAGATGTAGATATAGACTACACCACGGGTCGGGTCAA
AATCGCTTCGTGA
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Coding sequence (CDS) from alignment at tig00004373_pilon:619506..620318-

>Gchil4084.t1 ID=Gchil4084.t1|Name=Gchil4084.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=813bp|location=Sequence derived from alignment at tig00004373_pilon:619506..620318- (Gracilaria chilensis NLEC103_M9 male)
ATGATCGGATGCAGTCCACGGCTAGCCTTTACAACCTCAGTAGTTCTTGC
AAAAACCCATCATGCTCGAGACAACATCAGAAAACAAAGGAAGGCATCGT
TGTGGATGGCACTGCCCAAAAACCACGCCCTGCAGCAGAGTGTAGCGGAA
TGGGGGCTAACTATCGATCCGCAGGACGACTTTGATTCAATATCCTCGCT
CAATGTTCAACCTCCCTTGCTCCGTGTACCAGACTTGCTCACACCTGCTC
AATGCGATGCACTTATCGCCGCTCAAAGCACCAATGCATTCGAATCAGAA
CTCTATCTCAACTACCGTCTCAACACCAATTCTGGCACTCAAAGCTGCGG
ATTTCGCACAAATGTCGCGCCCAATGAACCTTCATTTCAGCCTATTTTGG
AACAGATCCACAAAGTGCTCGGGTTCACGAACCGTTCGTTTGTGTTCGCT
GAGCAGCTTTGGACGCGACCAACAAAACGCACTGTGGTGATTCGCGATGC
CACTACGGTGCGTTACAAACCCGGAGAAGGAGTACCAGCTCATGTTGATG
GAAATGATTGCACCGTGCTTATTTGCCTTCAGGAACCGAAGCGAGGAGGG
CGTACAATCTTTCCGAATGACGGCGTGTATGTTGAGCAGATGCGCGGTTC
TGCTTTGATCTATCATAGCAAACACAAATTGCTGCACTTTGCTGAGGAGG
TTGAAGACGGTACAAAGTGGGTGCTTCAACTCCTTATTGACTTTACGATT
CGTCCCGATGAACCAGATGTAGATATAGACTACACCACGGGTCGGGTCAA
AATCGCTTCGTGA
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