Gchil4078.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4078.t1
Unique Name	Gchil4078.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	682

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:332228..334273 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX47076
Preferred name	FTSH1
PFAMs	AAA,Peptidase_M41
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03798
KEGG Module	M00742
GOs	GO:0003674,GO:0003824,GO:0004176,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009056,GO:0009057,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009628,GO:0009642,GO:0009644,GO:0009719,GO:0009725,GO:0009735,GO:0009765,GO:0009892,GO:0009941,GO:0009987,GO:0010033,GO:0010109,GO:0010205,GO:0010206,GO:0010304,GO:0015979,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019538,GO:0019684,GO:0022607,GO:0030091,GO:0030163,GO:0031323,GO:0031324,GO:0031967,GO:0031975,GO:0031976,GO:0031977,GO:0031984,GO:0034357,GO:0034622,GO:0042221,GO:0042548,GO:0042623,GO:0042651,GO:0043155,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043467,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0048519,GO:0048523,GO:0048564,GO:0050789,GO:0050794,GO:0050896,GO:0055035,GO:0065003,GO:0065007,GO:0070011,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1905156
Evalue	0.0
EggNOG OGs	COG0465@1\|root,KOG0731@2759\|Eukaryota
Description	metalloendopeptidase activity
COG category	O
BRITE	ko00000,ko00002,ko01000,ko01002,ko03110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4078	Gchil4078	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 332228..334273 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4078.t1.stop1	Gchil4078.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 332228..332230 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4078.t1.CDS1	Gchil4078.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 332228..334273 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4078.t1.exon1	Gchil4078.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 332228..334273 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4078.t1.start1	Gchil4078.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 334271..334273 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4078.t1	Gchil4078.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 332228..334273 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:332228..334273-
coding sequence from alignment at tig00004373_pilon:332228..334273-

mRNA sequence

>Gchil4078.t1 ID=Gchil4078.t1|Name=Gchil4078.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=682bp
MTRSAPSPSLPAILLDNTSGNRLQRVAALLSQELSRTASVAAAAAILAAV
ATNVAPVHAAADPVQMTGMRQETSAAATRSMSSDSTPAPVSNGVQDWRYS
QFIDAVENDQVEKVTFSADGQRLLAVDTDGNRFKLDALPNDPDLLKTLTG
HKVDVTVLPSQPEGGAGDFIRSLIFPALLFGGLFLLSRRAGGGSGFGPMG
GPMDLQRSGARVSMVPETGITFKDVAGVDGAKLELQEVVQFLKESERFTE
LGAKIPRGVILEGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVG
ASRVRDLFANAKKNAPCIIFIDEIDAVGRQRGAGIAGGNDEREQTLNQML
TEMDGFEGNSGVIVIAATNRADVLDNALLRPGRFDRRVVVDLPDFNGRAA
ILKVHARGKPLAKDVDIEQIARRTPGFSGASLQNLLNEAAIFTARRQKTE
IGPDEVSDAIDRITIGAEKKEAVMTPQRQKLVAYHEAGHAIVGALTPDYD
QVAKISIIPRGGAGGLTFFAPNEQRVDSGLYSRQFLEGQLAVALGGRIAE
ELVFGNDKVTTGASNDLQRVTQVAKQMVTRFGMSQKVGQLSLNTDGGNPF
LGRQMASGGTQMSSVLKAEIDEEVRRLVNVAYTRAKGLLTSNRHLLDALA
ELLIEKETVSAEEFQRLIAKNKIEMMPYAVY*

spliced messenger RNA

>Gchil4078.t1 ID=Gchil4078.t1|Name=Gchil4078.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2046bp|location=Sequence derived from alignment at tig00004373_pilon:332228..334273- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAAGGTCTGCACCTTCCCCATCCCTTCCAGCGATTCTTCTTGACAA
CACTTCAGGAAACCGTCTGCAGCGAGTAGCGGCCTTACTTTCACAAGAGC
TTAGTCGCACTGCATCCGTCGCAGCGGCAGCGGCCATCCTCGCTGCTGTG
GCTACGAATGTCGCTCCAGTTCACGCCGCGGCCGATCCGGTACAAATGAC
CGGAATGCGACAGGAAACAAGCGCCGCTGCTACCCGGTCAATGTCGTCCG
ACAGCACCCCAGCTCCAGTCTCTAACGGCGTCCAGGACTGGCGCTATTCG
CAGTTTATCGACGCGGTTGAGAATGATCAAGTCGAAAAAGTCACCTTTTC
TGCCGATGGCCAGCGCCTTCTTGCCGTGGACACTGATGGAAACCGCTTCA
AGCTTGATGCTCTCCCGAACGACCCTGACTTGTTGAAGACATTGACTGGT
CACAAGGTTGACGTAACAGTTCTACCATCTCAGCCCGAAGGCGGCGCTGG
TGACTTCATTCGATCCCTTATCTTCCCCGCGTTGCTCTTTGGCGGCTTGT
TTCTGCTTTCACGCCGTGCGGGAGGTGGCAGCGGCTTCGGACCCATGGGA
GGTCCAATGGACTTGCAGCGTTCTGGTGCGCGCGTTTCTATGGTTCCGGA
GACAGGTATTACTTTCAAGGACGTCGCCGGTGTGGACGGCGCCAAGTTGG
AACTTCAAGAGGTTGTGCAGTTCTTGAAGGAATCCGAGCGCTTCACAGAG
CTCGGGGCGAAGATTCCCCGCGGTGTCATTTTGGAGGGTCCTCCAGGTAC
TGGAAAGACCCTTCTGGCTCGCGCAGTCGCTGGAGAGGCCGGTGTCCCTT
TCTTCTCAATTTCAGGCTCTGAGTTTGTGGAAATGTTTGTTGGGGTGGGT
GCATCTCGTGTTAGGGATCTCTTCGCAAACGCTAAGAAGAATGCCCCGTG
TATTATCTTCATCGATGAAATTGATGCGGTTGGTCGCCAGCGTGGAGCGG
GTATTGCGGGTGGTAACGACGAACGTGAACAGACCCTCAACCAAATGCTT
ACCGAGATGGACGGATTTGAAGGCAATTCCGGCGTGATTGTCATTGCGGC
GACGAACAGGGCCGATGTCTTAGATAACGCTCTTCTGAGACCGGGTCGAT
TTGATCGGCGCGTCGTTGTCGACCTCCCAGACTTCAACGGTCGTGCCGCC
ATTCTAAAGGTGCACGCCCGAGGTAAGCCGCTCGCGAAGGACGTTGATAT
TGAACAGATTGCACGTCGCACGCCTGGCTTCTCTGGCGCTTCTCTTCAGA
ATCTGCTGAACGAAGCAGCTATCTTCACCGCCCGGCGTCAAAAAACGGAG
ATTGGCCCAGATGAAGTCAGCGATGCAATCGACCGTATTACTATCGGGGC
TGAGAAAAAGGAGGCTGTCATGACACCCCAACGCCAGAAGCTTGTTGCTT
ATCATGAAGCTGGTCACGCTATTGTAGGCGCTCTGACTCCCGACTACGAT
CAAGTTGCAAAGATTAGCATCATTCCGAGAGGTGGTGCTGGGGGATTGAC
GTTTTTTGCACCGAATGAACAAAGAGTAGACTCCGGTTTGTACTCACGAC
AGTTTCTCGAGGGACAGCTCGCTGTTGCACTGGGCGGGCGTATTGCTGAG
GAACTCGTGTTTGGTAACGATAAGGTGACTACAGGCGCCTCAAACGATCT
TCAGAGAGTTACCCAAGTTGCCAAACAAATGGTAACCCGATTTGGTATGT
CTCAAAAGGTTGGTCAACTGTCACTAAACACCGATGGTGGAAATCCTTTC
CTTGGACGTCAAATGGCAAGCGGAGGGACTCAAATGAGTTCAGTTCTTAA
AGCGGAAATTGATGAGGAAGTCCGTCGTCTAGTGAACGTTGCATACACAA
GAGCGAAAGGCCTCCTCACTAGCAACAGGCACTTACTTGATGCCCTGGCA
GAGTTGTTGATTGAGAAAGAAACTGTGTCAGCTGAGGAATTCCAGAGACT
AATCGCTAAAAACAAGATTGAAATGATGCCGTACGCTGTCTATTAA

protein sequence of Gchil4078.t1

>Gchil4078.t1 ID=Gchil4078.t1|Name=Gchil4078.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=682bp
MTRSAPSPSLPAILLDNTSGNRLQRVAALLSQELSRTASVAAAAAILAAV
ATNVAPVHAAADPVQMTGMRQETSAAATRSMSSDSTPAPVSNGVQDWRYS
QFIDAVENDQVEKVTFSADGQRLLAVDTDGNRFKLDALPNDPDLLKTLTG
HKVDVTVLPSQPEGGAGDFIRSLIFPALLFGGLFLLSRRAGGGSGFGPMG
GPMDLQRSGARVSMVPETGITFKDVAGVDGAKLELQEVVQFLKESERFTE
LGAKIPRGVILEGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVG
ASRVRDLFANAKKNAPCIIFIDEIDAVGRQRGAGIAGGNDEREQTLNQML
TEMDGFEGNSGVIVIAATNRADVLDNALLRPGRFDRRVVVDLPDFNGRAA
ILKVHARGKPLAKDVDIEQIARRTPGFSGASLQNLLNEAAIFTARRQKTE
IGPDEVSDAIDRITIGAEKKEAVMTPQRQKLVAYHEAGHAIVGALTPDYD
QVAKISIIPRGGAGGLTFFAPNEQRVDSGLYSRQFLEGQLAVALGGRIAE
ELVFGNDKVTTGASNDLQRVTQVAKQMVTRFGMSQKVGQLSLNTDGGNPF
LGRQMASGGTQMSSVLKAEIDEEVRRLVNVAYTRAKGLLTSNRHLLDALA
ELLIEKETVSAEEFQRLIAKNKIEMMPYAVY*

mRNA from alignment at tig00004373_pilon:332228..334273-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4078.t1 ID=Gchil4078.t1|Name=Gchil4078.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2046bp|location=Sequence derived from alignment at tig00004373_pilon:332228..334273- (Gracilaria chilensis NLEC103_M9 male)
ATGACAAGGTCTGCACCTTCCCCATCCCTTCCAGCGATTCTTCTTGACAA
CACTTCAGGAAACCGTCTGCAGCGAGTAGCGGCCTTACTTTCACAAGAGC
TTAGTCGCACTGCATCCGTCGCAGCGGCAGCGGCCATCCTCGCTGCTGTG
GCTACGAATGTCGCTCCAGTTCACGCCGCGGCCGATCCGGTACAAATGAC
CGGAATGCGACAGGAAACAAGCGCCGCTGCTACCCGGTCAATGTCGTCCG
ACAGCACCCCAGCTCCAGTCTCTAACGGCGTCCAGGACTGGCGCTATTCG
CAGTTTATCGACGCGGTTGAGAATGATCAAGTCGAAAAAGTCACCTTTTC
TGCCGATGGCCAGCGCCTTCTTGCCGTGGACACTGATGGAAACCGCTTCA
AGCTTGATGCTCTCCCGAACGACCCTGACTTGTTGAAGACATTGACTGGT
CACAAGGTTGACGTAACAGTTCTACCATCTCAGCCCGAAGGCGGCGCTGG
TGACTTCATTCGATCCCTTATCTTCCCCGCGTTGCTCTTTGGCGGCTTGT
TTCTGCTTTCACGCCGTGCGGGAGGTGGCAGCGGCTTCGGACCCATGGGA
GGTCCAATGGACTTGCAGCGTTCTGGTGCGCGCGTTTCTATGGTTCCGGA
GACAGGTATTACTTTCAAGGACGTCGCCGGTGTGGACGGCGCCAAGTTGG
AACTTCAAGAGGTTGTGCAGTTCTTGAAGGAATCCGAGCGCTTCACAGAG
CTCGGGGCGAAGATTCCCCGCGGTGTCATTTTGGAGGGTCCTCCAGGTAC
TGGAAAGACCCTTCTGGCTCGCGCAGTCGCTGGAGAGGCCGGTGTCCCTT
TCTTCTCAATTTCAGGCTCTGAGTTTGTGGAAATGTTTGTTGGGGTGGGT
GCATCTCGTGTTAGGGATCTCTTCGCAAACGCTAAGAAGAATGCCCCGTG
TATTATCTTCATCGATGAAATTGATGCGGTTGGTCGCCAGCGTGGAGCGG
GTATTGCGGGTGGTAACGACGAACGTGAACAGACCCTCAACCAAATGCTT
ACCGAGATGGACGGATTTGAAGGCAATTCCGGCGTGATTGTCATTGCGGC
GACGAACAGGGCCGATGTCTTAGATAACGCTCTTCTGAGACCGGGTCGAT
TTGATCGGCGCGTCGTTGTCGACCTCCCAGACTTCAACGGTCGTGCCGCC
ATTCTAAAGGTGCACGCCCGAGGTAAGCCGCTCGCGAAGGACGTTGATAT
TGAACAGATTGCACGTCGCACGCCTGGCTTCTCTGGCGCTTCTCTTCAGA
ATCTGCTGAACGAAGCAGCTATCTTCACCGCCCGGCGTCAAAAAACGGAG
ATTGGCCCAGATGAAGTCAGCGATGCAATCGACCGTATTACTATCGGGGC
TGAGAAAAAGGAGGCTGTCATGACACCCCAACGCCAGAAGCTTGTTGCTT
ATCATGAAGCTGGTCACGCTATTGTAGGCGCTCTGACTCCCGACTACGAT
CAAGTTGCAAAGATTAGCATCATTCCGAGAGGTGGTGCTGGGGGATTGAC
GTTTTTTGCACCGAATGAACAAAGAGTAGACTCCGGTTTGTACTCACGAC
AGTTTCTCGAGGGACAGCTCGCTGTTGCACTGGGCGGGCGTATTGCTGAG
GAACTCGTGTTTGGTAACGATAAGGTGACTACAGGCGCCTCAAACGATCT
TCAGAGAGTTACCCAAGTTGCCAAACAAATGGTAACCCGATTTGGTATGT
CTCAAAAGGTTGGTCAACTGTCACTAAACACCGATGGTGGAAATCCTTTC
CTTGGACGTCAAATGGCAAGCGGAGGGACTCAAATGAGTTCAGTTCTTAA
AGCGGAAATTGATGAGGAAGTCCGTCGTCTAGTGAACGTTGCATACACAA
GAGCGAAAGGCCTCCTCACTAGCAACAGGCACTTACTTGATGCCCTGGCA
GAGTTGTTGATTGAGAAAGAAACTGTGTCAGCTGAGGAATTCCAGAGACT
AATCGCTAAAAACAAGATTGAAATGATGCCGTACGCTGTCTATTAA

Coding sequence (CDS) from alignment at tig00004373_pilon:332228..334273-

>Gchil4078.t1 ID=Gchil4078.t1|Name=Gchil4078.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2046bp|location=Sequence derived from alignment at tig00004373_pilon:332228..334273- (Gracilaria chilensis NLEC103_M9 male)
ATGACAAGGTCTGCACCTTCCCCATCCCTTCCAGCGATTCTTCTTGACAA
CACTTCAGGAAACCGTCTGCAGCGAGTAGCGGCCTTACTTTCACAAGAGC
TTAGTCGCACTGCATCCGTCGCAGCGGCAGCGGCCATCCTCGCTGCTGTG
GCTACGAATGTCGCTCCAGTTCACGCCGCGGCCGATCCGGTACAAATGAC
CGGAATGCGACAGGAAACAAGCGCCGCTGCTACCCGGTCAATGTCGTCCG
ACAGCACCCCAGCTCCAGTCTCTAACGGCGTCCAGGACTGGCGCTATTCG
CAGTTTATCGACGCGGTTGAGAATGATCAAGTCGAAAAAGTCACCTTTTC
TGCCGATGGCCAGCGCCTTCTTGCCGTGGACACTGATGGAAACCGCTTCA
AGCTTGATGCTCTCCCGAACGACCCTGACTTGTTGAAGACATTGACTGGT
CACAAGGTTGACGTAACAGTTCTACCATCTCAGCCCGAAGGCGGCGCTGG
TGACTTCATTCGATCCCTTATCTTCCCCGCGTTGCTCTTTGGCGGCTTGT
TTCTGCTTTCACGCCGTGCGGGAGGTGGCAGCGGCTTCGGACCCATGGGA
GGTCCAATGGACTTGCAGCGTTCTGGTGCGCGCGTTTCTATGGTTCCGGA
GACAGGTATTACTTTCAAGGACGTCGCCGGTGTGGACGGCGCCAAGTTGG
AACTTCAAGAGGTTGTGCAGTTCTTGAAGGAATCCGAGCGCTTCACAGAG
CTCGGGGCGAAGATTCCCCGCGGTGTCATTTTGGAGGGTCCTCCAGGTAC
TGGAAAGACCCTTCTGGCTCGCGCAGTCGCTGGAGAGGCCGGTGTCCCTT
TCTTCTCAATTTCAGGCTCTGAGTTTGTGGAAATGTTTGTTGGGGTGGGT
GCATCTCGTGTTAGGGATCTCTTCGCAAACGCTAAGAAGAATGCCCCGTG
TATTATCTTCATCGATGAAATTGATGCGGTTGGTCGCCAGCGTGGAGCGG
GTATTGCGGGTGGTAACGACGAACGTGAACAGACCCTCAACCAAATGCTT
ACCGAGATGGACGGATTTGAAGGCAATTCCGGCGTGATTGTCATTGCGGC
GACGAACAGGGCCGATGTCTTAGATAACGCTCTTCTGAGACCGGGTCGAT
TTGATCGGCGCGTCGTTGTCGACCTCCCAGACTTCAACGGTCGTGCCGCC
ATTCTAAAGGTGCACGCCCGAGGTAAGCCGCTCGCGAAGGACGTTGATAT
TGAACAGATTGCACGTCGCACGCCTGGCTTCTCTGGCGCTTCTCTTCAGA
ATCTGCTGAACGAAGCAGCTATCTTCACCGCCCGGCGTCAAAAAACGGAG
ATTGGCCCAGATGAAGTCAGCGATGCAATCGACCGTATTACTATCGGGGC
TGAGAAAAAGGAGGCTGTCATGACACCCCAACGCCAGAAGCTTGTTGCTT
ATCATGAAGCTGGTCACGCTATTGTAGGCGCTCTGACTCCCGACTACGAT
CAAGTTGCAAAGATTAGCATCATTCCGAGAGGTGGTGCTGGGGGATTGAC
GTTTTTTGCACCGAATGAACAAAGAGTAGACTCCGGTTTGTACTCACGAC
AGTTTCTCGAGGGACAGCTCGCTGTTGCACTGGGCGGGCGTATTGCTGAG
GAACTCGTGTTTGGTAACGATAAGGTGACTACAGGCGCCTCAAACGATCT
TCAGAGAGTTACCCAAGTTGCCAAACAAATGGTAACCCGATTTGGTATGT
CTCAAAAGGTTGGTCAACTGTCACTAAACACCGATGGTGGAAATCCTTTC
CTTGGACGTCAAATGGCAAGCGGAGGGACTCAAATGAGTTCAGTTCTTAA
AGCGGAAATTGATGAGGAAGTCCGTCGTCTAGTGAACGTTGCATACACAA
GAGCGAAAGGCCTCCTCACTAGCAACAGGCACTTACTTGATGCCCTGGCA
GAGTTGTTGATTGAGAAAGAAACTGTGTCAGCTGAGGAATTCCAGAGACT
AATCGCTAAAAACAAGATTGAAATGATGCCGTACGCTGTCTATTAA