Gchil4077.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4077.t1
Unique NameGchil4077.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length134
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:331216..331813 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog936053.I1BJ50
Preferred nameTAF12
PFAMsTFIID_20kDa
Max annot lvl4751|Fungi
KEGG koko:K03126
KEGG Pathwayko03022,map03022
GOsGO:0000123,GO:0000124,GO:0000228,GO:0000428,GO:0000785,GO:0000790,GO:0000988,GO:0000990,GO:0000991,GO:0001085,GO:0001102,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005694,GO:0006139,GO:0006325,GO:0006338,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006996,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016043,GO:0016070,GO:0016569,GO:0016570,GO:0016573,GO:0016591,GO:0017025,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0022607,GO:0030880,GO:0031248,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032774,GO:0032947,GO:0032991,GO:0033613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043933,GO:0043966,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044798,GO:0046483,GO:0046695,GO:0050789,GO:0050794,GO:0051123,GO:0051171,GO:0051252,GO:0051276,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070461,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902493,GO:1902494,GO:1903506,GO:1905368,GO:1990234,GO:2000112,GO:2001141
Evalue2.16e-25
EggNOG OGsCOG5624@1|root,KOG1142@2759|Eukaryota,39SFE@33154|Opisthokonta,3NYSW@4751|Fungi,1GTX1@112252|Fungi incertae sedis
DescriptionTranscription initiation factor TFIID subunit A
COG categoryK
BRITEko00000,ko00001,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4077Gchil4077Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 331216..331813 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4077.t1Gchil4077.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 331216..331813 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4077.t1.start1Gchil4077.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 331216..331218 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4077.t1.CDS1Gchil4077.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 331216..331319 +
Gchil4077.t1.CDS2Gchil4077.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 331405..331465 +
Gchil4077.t1.CDS3Gchil4077.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 331577..331813 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4077.t1.exon1Gchil4077.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 331216..331319 +
Gchil4077.t1.exon2Gchil4077.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 331405..331465 +
Gchil4077.t1.exon3Gchil4077.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 331577..331813 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4077.t1.intron1Gchil4077.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 331320..331404 +
Gchil4077.t1.intron2Gchil4077.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 331466..331576 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4077.t1.stop1Gchil4077.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 331811..331813 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4077.t1 ID=Gchil4077.t1|Name=Gchil4077.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=134bp
MSARVGGSGATSGDSRTPRTPYISQQARELLPPEKLRELLHEVAPGEVLD
PEVEEFLQEHVDEFVESVTEFGCLMAKHRRSKVLEARDIQFHLESAWNIR
VPGYGDDPRPAKRNVTTPIHNARLQAVQKAQQQ*
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spliced messenger RNA

>Gchil4077.t1 ID=Gchil4077.t1|Name=Gchil4077.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=402bp|location=Sequence derived from alignment at tig00004373_pilon:331216..331813+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGCGAGAGTTGGCGGCAGCGGTGCCACTTCAGGAGACTCTCGCAC
TCCCCGTACACCTTACATTTCGCAACAAGCTCGGGAACTACTTCCCCCGG
AAAAGCTTCGGGAACTGCTTCACGAGGTAGCACCAGGTGAAGTATTGGAC
CCAGAAGTTGAAGAGTTTCTTCAAGAGCACGTCGATGAATTTGTTGAATC
CGTGACCGAGTTCGGATGCCTCATGGCCAAACACCGCAGAAGCAAAGTTC
TAGAGGCAAGAGACATACAATTTCATCTCGAGTCCGCGTGGAACATAAGA
GTGCCTGGCTATGGTGACGATCCTCGGCCAGCAAAACGAAATGTAACCAC
ACCGATTCACAACGCTCGGCTTCAGGCCGTTCAAAAAGCTCAACAGCAAT
GA
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protein sequence of Gchil4077.t1

>Gchil4077.t1 ID=Gchil4077.t1|Name=Gchil4077.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=134bp
MSARVGGSGATSGDSRTPRTPYISQQARELLPPEKLRELLHEVAPGEVLD
PEVEEFLQEHVDEFVESVTEFGCLMAKHRRSKVLEARDIQFHLESAWNIR
VPGYGDDPRPAKRNVTTPIHNARLQAVQKAQQQ*
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mRNA from alignment at tig00004373_pilon:331216..331813+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4077.t1 ID=Gchil4077.t1|Name=Gchil4077.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=598bp|location=Sequence derived from alignment at tig00004373_pilon:331216..331813+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCAGCGAGAGTTGGCGGCAGCGGTGCCACTTCAGGAGACTCTCGCAC
TCCCCGTACACCTTACATTTCGCAACAAGCTCGGGAACTACTTCCCCCGG
AAAAGTAGGTTGCTTCCTCAAACCCTAACAAGCTTGGGCTATTGCACACT
CACATCCATTTCTAACCTGAACTTGAAATTGCGACATAGGCTTCGGGAAC
TGCTTCACGAGGTAGCACCAGGTGAAGTATTGGACCCAGAAGTTGAAGAG
GTACGTGAGCTGATACTGAAGGCTGTAGGGTAGTCGCGTGTCTGCCAAGT
GTCAGCTTGATACATCTCTTATGCGAATAATAACTAACGTCTTTCGTTAC
GTGTTTAACAGTTTCTTCAAGAGCACGTCGATGAATTTGTTGAATCCGTG
ACCGAGTTCGGATGCCTCATGGCCAAACACCGCAGAAGCAAAGTTCTAGA
GGCAAGAGACATACAATTTCATCTCGAGTCCGCGTGGAACATAAGAGTGC
CTGGCTATGGTGACGATCCTCGGCCAGCAAAACGAAATGTAACCACACCG
ATTCACAACGCTCGGCTTCAGGCCGTTCAAAAAGCTCAACAGCAATGA
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Coding sequence (CDS) from alignment at tig00004373_pilon:331216..331813+

>Gchil4077.t1 ID=Gchil4077.t1|Name=Gchil4077.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=402bp|location=Sequence derived from alignment at tig00004373_pilon:331216..331813+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCAGCGAGAGTTGGCGGCAGCGGTGCCACTTCAGGAGACTCTCGCAC
TCCCCGTACACCTTACATTTCGCAACAAGCTCGGGAACTACTTCCCCCGG
AAAAGCTTCGGGAACTGCTTCACGAGGTAGCACCAGGTGAAGTATTGGAC
CCAGAAGTTGAAGAGTTTCTTCAAGAGCACGTCGATGAATTTGTTGAATC
CGTGACCGAGTTCGGATGCCTCATGGCCAAACACCGCAGAAGCAAAGTTC
TAGAGGCAAGAGACATACAATTTCATCTCGAGTCCGCGTGGAACATAAGA
GTGCCTGGCTATGGTGACGATCCTCGGCCAGCAAAACGAAATGTAACCAC
ACCGATTCACAACGCTCGGCTTCAGGCCGTTCAAAAAGCTCAACAGCAAT
GA
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