Gchil4076.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4076.t1
Unique NameGchil4076.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length717
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:328412..330643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4076Gchil4076Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 328412..330643 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4076.t1Gchil4076.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 328412..330643 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4076.t1.stop1Gchil4076.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 328412..328414 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4076.t1.CDS1Gchil4076.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 328412..328909 -
Gchil4076.t1.CDS2Gchil4076.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 328991..330643 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4076.t1.exon1Gchil4076.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 328412..328909 -
Gchil4076.t1.exon2Gchil4076.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 328991..330643 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4076.t1.intron1Gchil4076.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 328910..328990 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4076.t1.start1Gchil4076.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 330641..330643 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4076.t1 ID=Gchil4076.t1|Name=Gchil4076.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=717bp
MATAPSPEGEIDSDEELEWQQINEVMNVIEQQYIDAGNSLGGGVTILTPT
NTGNPVNNNRSLQAPVIPSLAPMPIPLVQSNTVAHDISDRTPHVQGLSFS
TVPQVQAASIATPQNIQSSSLTHIRSDEVPPVQGLRMPLAPVAQAASNAI
PHISQASCPAPSSLFQPQTTPIPMPAETRPGPEIAQLQMLLEEQRGSLAS
HQNRMRGMQAELDSLRALDVENMRSENMRLTAALSAAAQESARLQEQLGY
TKQELSSLRDRRRFEAVAMSHGAGGSQHPASQIAGTQIPGTQVIGSQLAR
SQTKIGVRRSLREQLPSQRPPPGAYSRRSRAPDSNPIRHSGRDRKTPASQ
KKNEPHKKTPDAQEVPTSTTCWRLELEDSMNYIAKAALRQHLFSGANGSS
LWQLARVTGQEHLRRALLAGMSSDDEWPNLLEPLTSVLNAGRGAALTSLT
ATYGLLVYSDECRKSVETLLNVSVKVMEALKGAGKRIDFEIADKCLLVLR
VMFDGVVVHGNEEQVMLFKAKVFADDVLNWARRMRKLPISVPQNQRVLSS
KLRILEEALAAASDAIRTELDPPKYAFAMLTSAACHVPSTIDDNAVAALA
DACVHAVQTLRVADRRAEEQRERVPVWEEDIVGETRERKKLASLVRGCIA
VLALIARSRNLVLRKAERNVVLGVLSVLAWPSQRKHDFHPPKELGGEAFI
AECRTVWMAFRKKAGV*
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spliced messenger RNA

>Gchil4076.t1 ID=Gchil4076.t1|Name=Gchil4076.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2151bp|location=Sequence derived from alignment at tig00004373_pilon:328412..330643- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTACAGCGCCTTCGCCAGAAGGCGAAATCGATTCGGATGAAGAGCT
GGAGTGGCAGCAGATCAACGAGGTCATGAACGTCATAGAACAACAGTACA
TTGATGCTGGGAACTCTCTTGGTGGTGGAGTTACTATCCTAACCCCGACC
AACACAGGAAATCCTGTCAACAATAACAGGTCGCTTCAAGCGCCTGTGAT
TCCGTCATTGGCCCCAATGCCTATACCGCTCGTGCAATCTAACACGGTAG
CGCACGACATAAGCGATAGGACACCGCACGTTCAGGGATTGAGCTTCTCT
ACAGTTCCGCAAGTTCAAGCCGCATCGATTGCTACACCGCAAAACATACA
ATCATCAAGTCTTACACATATCAGGAGTGACGAGGTGCCGCCCGTTCAGG
GGTTAAGGATGCCTTTAGCCCCTGTAGCTCAAGCTGCATCCAACGCCATA
CCCCATATCTCACAAGCATCATGTCCAGCTCCCTCATCTCTATTCCAACC
ACAGACAACACCAATTCCGATGCCTGCTGAGACTAGACCAGGCCCAGAAA
TTGCTCAACTACAAATGCTCTTAGAAGAACAACGTGGCTCGCTTGCAAGC
CACCAAAACCGCATGCGAGGAATGCAGGCAGAGCTGGACTCTCTGCGCGC
TTTGGATGTTGAGAATATGCGCTCCGAGAACATGCGGCTAACCGCTGCTC
TTTCTGCTGCAGCCCAAGAAAGTGCCCGTTTGCAGGAGCAATTGGGCTAC
ACCAAGCAAGAACTATCATCTTTGCGTGATCGCCGAAGATTTGAAGCAGT
TGCCATGTCGCATGGAGCTGGGGGCAGTCAGCACCCTGCGTCGCAAATAG
CGGGTACACAGATCCCAGGCACCCAGGTGATTGGTTCACAATTAGCTAGA
TCTCAGACTAAGATCGGAGTAAGAAGAAGTCTACGAGAACAACTACCTTC
ACAACGGCCTCCACCTGGCGCATATAGTCGCAGGTCTCGTGCACCCGACT
CAAATCCTATTAGACACTCAGGCCGGGATCGCAAGACCCCTGCAAGCCAA
AAGAAGAATGAACCACACAAGAAAACGCCAGACGCACAAGAAGTACCTAC
GAGTACTACTTGCTGGAGACTCGAGTTAGAAGACTCGATGAACTATATTG
CAAAAGCGGCTCTCCGTCAGCATCTATTCTCCGGTGCGAATGGTTCATCA
CTTTGGCAGCTGGCACGCGTTACCGGACAGGAACATTTGCGCCGTGCTTT
GCTTGCAGGGATGAGCAGTGACGATGAATGGCCCAATCTATTGGAACCTT
TGACATCAGTGTTGAATGCCGGTAGAGGAGCTGCCTTGACATCGCTAACA
GCTACGTACGGGCTACTCGTGTATTCTGATGAATGTCGAAAAAGCGTAGA
GACATTGTTGAACGTGTCGGTCAAGGTAATGGAAGCACTCAAGGGAGCTG
GGAAGCGCATCGATTTCGAGATAGCGGATAAATGCTTACTGGTTTTGCGA
GTCATGTTTGATGGTGTCGTAGTGCATGGGAATGAGGAGCAAGTGATGCT
CTTTAAAGCTAAGGTTTTTGCTGATGATGTTCTAAATTGGGCGAGGCGAA
TGCGAAAGTTACCGATCTCTGTTCCGCAGAATCAACGGGTTCTAAGCTCA
AAGTTACGTATCCTTGAGGAAGCGTTGGCCGCTGCTAGTGATGCGATTCG
GACCGAATTAGACCCTCCGAAATATGCTTTTGCGATGTTGACTAGTGCAG
CTTGTCATGTGCCTTCGACGATTGATGATAATGCAGTAGCTGCTCTTGCA
GATGCTTGTGTACACGCCGTTCAGACACTTCGGGTAGCAGACAGGCGAGC
AGAGGAGCAGAGAGAGCGGGTGCCAGTCTGGGAGGAGGATATCGTCGGGG
AGACAAGAGAACGAAAGAAGCTAGCCTCATTGGTTCGAGGTTGCATCGCT
GTGCTTGCTCTCATAGCCAGGTCCAGAAACCTTGTGCTTCGCAAAGCGGA
AAGAAATGTAGTGCTGGGTGTGCTTTCGGTGCTGGCATGGCCATCTCAAA
GAAAGCATGATTTTCATCCACCGAAAGAACTAGGTGGCGAAGCTTTTATT
GCGGAGTGTCGGACAGTTTGGATGGCCTTTCGAAAAAAAGCCGGTGTTTG
A
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protein sequence of Gchil4076.t1

>Gchil4076.t1 ID=Gchil4076.t1|Name=Gchil4076.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=717bp
MATAPSPEGEIDSDEELEWQQINEVMNVIEQQYIDAGNSLGGGVTILTPT
NTGNPVNNNRSLQAPVIPSLAPMPIPLVQSNTVAHDISDRTPHVQGLSFS
TVPQVQAASIATPQNIQSSSLTHIRSDEVPPVQGLRMPLAPVAQAASNAI
PHISQASCPAPSSLFQPQTTPIPMPAETRPGPEIAQLQMLLEEQRGSLAS
HQNRMRGMQAELDSLRALDVENMRSENMRLTAALSAAAQESARLQEQLGY
TKQELSSLRDRRRFEAVAMSHGAGGSQHPASQIAGTQIPGTQVIGSQLAR
SQTKIGVRRSLREQLPSQRPPPGAYSRRSRAPDSNPIRHSGRDRKTPASQ
KKNEPHKKTPDAQEVPTSTTCWRLELEDSMNYIAKAALRQHLFSGANGSS
LWQLARVTGQEHLRRALLAGMSSDDEWPNLLEPLTSVLNAGRGAALTSLT
ATYGLLVYSDECRKSVETLLNVSVKVMEALKGAGKRIDFEIADKCLLVLR
VMFDGVVVHGNEEQVMLFKAKVFADDVLNWARRMRKLPISVPQNQRVLSS
KLRILEEALAAASDAIRTELDPPKYAFAMLTSAACHVPSTIDDNAVAALA
DACVHAVQTLRVADRRAEEQRERVPVWEEDIVGETRERKKLASLVRGCIA
VLALIARSRNLVLRKAERNVVLGVLSVLAWPSQRKHDFHPPKELGGEAFI
AECRTVWMAFRKKAGV*
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mRNA from alignment at tig00004373_pilon:328412..330643-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4076.t1 ID=Gchil4076.t1|Name=Gchil4076.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2232bp|location=Sequence derived from alignment at tig00004373_pilon:328412..330643- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTACAGCGCCTTCGCCAGAAGGCGAAATCGATTCGGATGAAGAGCT
GGAGTGGCAGCAGATCAACGAGGTCATGAACGTCATAGAACAACAGTACA
TTGATGCTGGGAACTCTCTTGGTGGTGGAGTTACTATCCTAACCCCGACC
AACACAGGAAATCCTGTCAACAATAACAGGTCGCTTCAAGCGCCTGTGAT
TCCGTCATTGGCCCCAATGCCTATACCGCTCGTGCAATCTAACACGGTAG
CGCACGACATAAGCGATAGGACACCGCACGTTCAGGGATTGAGCTTCTCT
ACAGTTCCGCAAGTTCAAGCCGCATCGATTGCTACACCGCAAAACATACA
ATCATCAAGTCTTACACATATCAGGAGTGACGAGGTGCCGCCCGTTCAGG
GGTTAAGGATGCCTTTAGCCCCTGTAGCTCAAGCTGCATCCAACGCCATA
CCCCATATCTCACAAGCATCATGTCCAGCTCCCTCATCTCTATTCCAACC
ACAGACAACACCAATTCCGATGCCTGCTGAGACTAGACCAGGCCCAGAAA
TTGCTCAACTACAAATGCTCTTAGAAGAACAACGTGGCTCGCTTGCAAGC
CACCAAAACCGCATGCGAGGAATGCAGGCAGAGCTGGACTCTCTGCGCGC
TTTGGATGTTGAGAATATGCGCTCCGAGAACATGCGGCTAACCGCTGCTC
TTTCTGCTGCAGCCCAAGAAAGTGCCCGTTTGCAGGAGCAATTGGGCTAC
ACCAAGCAAGAACTATCATCTTTGCGTGATCGCCGAAGATTTGAAGCAGT
TGCCATGTCGCATGGAGCTGGGGGCAGTCAGCACCCTGCGTCGCAAATAG
CGGGTACACAGATCCCAGGCACCCAGGTGATTGGTTCACAATTAGCTAGA
TCTCAGACTAAGATCGGAGTAAGAAGAAGTCTACGAGAACAACTACCTTC
ACAACGGCCTCCACCTGGCGCATATAGTCGCAGGTCTCGTGCACCCGACT
CAAATCCTATTAGACACTCAGGCCGGGATCGCAAGACCCCTGCAAGCCAA
AAGAAGAATGAACCACACAAGAAAACGCCAGACGCACAAGAAGTACCTAC
GAGTACTACTTGCTGGAGACTCGAGTTAGAAGACTCGATGAACTATATTG
CAAAAGCGGCTCTCCGTCAGCATCTATTCTCCGGTGCGAATGGTTCATCA
CTTTGGCAGCTGGCACGCGTTACCGGACAGGAACATTTGCGCCGTGCTTT
GCTTGCAGGGATGAGCAGTGACGATGAATGGCCCAATCTATTGGAACCTT
TGACATCAGTGTTGAATGCCGGTAGAGGAGCTGCCTTGACATCGCTAACA
GCTACGTACGGGCTACTCGTGTATTCTGATGAATGTCGAAAAAGCGTAGA
GACATTGTTGAACGTGTCGGTCAAGGTAATGGAAGCACTCAAGGGAGCTG
GGAAGCGCATCGATTTCGAGATAGCGGATAAATGCTTACTGGTTTTGCGA
GTCATGTTTGATGGTGTCGTAGTGCATGGGAATGAGGAGCAAGTGATGCT
CTTTAAAGCTAAGGTTTTTGCTGATGATGTTCTAAATTGGGCGAGGCGAA
TGCGAAAGTTACCGATCTCTGTTCCGCAGAATCAACGGGTTCTAAGCTCA
AAGGTACGAGACTCAGCACTCTCCGTCCTTGAAGTAGGCGTTAACGCGTG
TCTGACTTCAACAATATCGCCTTGCGACGAGGAGTTACGTATCCTTGAGG
AAGCGTTGGCCGCTGCTAGTGATGCGATTCGGACCGAATTAGACCCTCCG
AAATATGCTTTTGCGATGTTGACTAGTGCAGCTTGTCATGTGCCTTCGAC
GATTGATGATAATGCAGTAGCTGCTCTTGCAGATGCTTGTGTACACGCCG
TTCAGACACTTCGGGTAGCAGACAGGCGAGCAGAGGAGCAGAGAGAGCGG
GTGCCAGTCTGGGAGGAGGATATCGTCGGGGAGACAAGAGAACGAAAGAA
GCTAGCCTCATTGGTTCGAGGTTGCATCGCTGTGCTTGCTCTCATAGCCA
GGTCCAGAAACCTTGTGCTTCGCAAAGCGGAAAGAAATGTAGTGCTGGGT
GTGCTTTCGGTGCTGGCATGGCCATCTCAAAGAAAGCATGATTTTCATCC
ACCGAAAGAACTAGGTGGCGAAGCTTTTATTGCGGAGTGTCGGACAGTTT
GGATGGCCTTTCGAAAAAAAGCCGGTGTTTGA
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Coding sequence (CDS) from alignment at tig00004373_pilon:328412..330643-

>Gchil4076.t1 ID=Gchil4076.t1|Name=Gchil4076.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2151bp|location=Sequence derived from alignment at tig00004373_pilon:328412..330643- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTACAGCGCCTTCGCCAGAAGGCGAAATCGATTCGGATGAAGAGCT
GGAGTGGCAGCAGATCAACGAGGTCATGAACGTCATAGAACAACAGTACA
TTGATGCTGGGAACTCTCTTGGTGGTGGAGTTACTATCCTAACCCCGACC
AACACAGGAAATCCTGTCAACAATAACAGGTCGCTTCAAGCGCCTGTGAT
TCCGTCATTGGCCCCAATGCCTATACCGCTCGTGCAATCTAACACGGTAG
CGCACGACATAAGCGATAGGACACCGCACGTTCAGGGATTGAGCTTCTCT
ACAGTTCCGCAAGTTCAAGCCGCATCGATTGCTACACCGCAAAACATACA
ATCATCAAGTCTTACACATATCAGGAGTGACGAGGTGCCGCCCGTTCAGG
GGTTAAGGATGCCTTTAGCCCCTGTAGCTCAAGCTGCATCCAACGCCATA
CCCCATATCTCACAAGCATCATGTCCAGCTCCCTCATCTCTATTCCAACC
ACAGACAACACCAATTCCGATGCCTGCTGAGACTAGACCAGGCCCAGAAA
TTGCTCAACTACAAATGCTCTTAGAAGAACAACGTGGCTCGCTTGCAAGC
CACCAAAACCGCATGCGAGGAATGCAGGCAGAGCTGGACTCTCTGCGCGC
TTTGGATGTTGAGAATATGCGCTCCGAGAACATGCGGCTAACCGCTGCTC
TTTCTGCTGCAGCCCAAGAAAGTGCCCGTTTGCAGGAGCAATTGGGCTAC
ACCAAGCAAGAACTATCATCTTTGCGTGATCGCCGAAGATTTGAAGCAGT
TGCCATGTCGCATGGAGCTGGGGGCAGTCAGCACCCTGCGTCGCAAATAG
CGGGTACACAGATCCCAGGCACCCAGGTGATTGGTTCACAATTAGCTAGA
TCTCAGACTAAGATCGGAGTAAGAAGAAGTCTACGAGAACAACTACCTTC
ACAACGGCCTCCACCTGGCGCATATAGTCGCAGGTCTCGTGCACCCGACT
CAAATCCTATTAGACACTCAGGCCGGGATCGCAAGACCCCTGCAAGCCAA
AAGAAGAATGAACCACACAAGAAAACGCCAGACGCACAAGAAGTACCTAC
GAGTACTACTTGCTGGAGACTCGAGTTAGAAGACTCGATGAACTATATTG
CAAAAGCGGCTCTCCGTCAGCATCTATTCTCCGGTGCGAATGGTTCATCA
CTTTGGCAGCTGGCACGCGTTACCGGACAGGAACATTTGCGCCGTGCTTT
GCTTGCAGGGATGAGCAGTGACGATGAATGGCCCAATCTATTGGAACCTT
TGACATCAGTGTTGAATGCCGGTAGAGGAGCTGCCTTGACATCGCTAACA
GCTACGTACGGGCTACTCGTGTATTCTGATGAATGTCGAAAAAGCGTAGA
GACATTGTTGAACGTGTCGGTCAAGGTAATGGAAGCACTCAAGGGAGCTG
GGAAGCGCATCGATTTCGAGATAGCGGATAAATGCTTACTGGTTTTGCGA
GTCATGTTTGATGGTGTCGTAGTGCATGGGAATGAGGAGCAAGTGATGCT
CTTTAAAGCTAAGGTTTTTGCTGATGATGTTCTAAATTGGGCGAGGCGAA
TGCGAAAGTTACCGATCTCTGTTCCGCAGAATCAACGGGTTCTAAGCTCA
AAGTTACGTATCCTTGAGGAAGCGTTGGCCGCTGCTAGTGATGCGATTCG
GACCGAATTAGACCCTCCGAAATATGCTTTTGCGATGTTGACTAGTGCAG
CTTGTCATGTGCCTTCGACGATTGATGATAATGCAGTAGCTGCTCTTGCA
GATGCTTGTGTACACGCCGTTCAGACACTTCGGGTAGCAGACAGGCGAGC
AGAGGAGCAGAGAGAGCGGGTGCCAGTCTGGGAGGAGGATATCGTCGGGG
AGACAAGAGAACGAAAGAAGCTAGCCTCATTGGTTCGAGGTTGCATCGCT
GTGCTTGCTCTCATAGCCAGGTCCAGAAACCTTGTGCTTCGCAAAGCGGA
AAGAAATGTAGTGCTGGGTGTGCTTTCGGTGCTGGCATGGCCATCTCAAA
GAAAGCATGATTTTCATCCACCGAAAGAACTAGGTGGCGAAGCTTTTATT
GCGGAGTGTCGGACAGTTTGGATGGCCTTTCGAAAAAAAGCCGGTGTTTG
A
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