Gchil4073.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4073.t1
Unique Name	Gchil4073.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	318

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:321797..322750 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708343.1
PFAMs	Mito_carr
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15111
KEGG TC	2.A.29.18
Evalue	2.85e-96
EggNOG OGs	KOG0770@1\|root,KOG0770@2759\|Eukaryota
Description	magnesium ion export from mitochondrion
COG category	U
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4073	Gchil4073	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 321797..322750 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4073.t1.start1	Gchil4073.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 321797..321799 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4073.t1.CDS1	Gchil4073.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 321797..322750 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4073.t1.exon1	Gchil4073.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 321797..322750 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4073.t1.stop1	Gchil4073.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 322748..322750 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4073.t1	Gchil4073.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 321797..322750 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:321797..322750+
coding sequence from alignment at tig00004373_pilon:321797..322750+

mRNA sequence

>Gchil4073.t1 ID=Gchil4073.t1|Name=Gchil4073.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=318bp
MGREPTVASGPGSEKWTIISDLLAGGLAGICCDAVLHPVDTVKSRLHVQQ
GPPFKYQSMLHGFRLIIRQEGLQKGLYAGFGAVIAGTIPSHAVIFASYKA
LKRRGEDGISDEQQLAAVDFVSASIGEVFALPFYVPADVIAKRMQVARLG
PARNYKSTIHAAQSILKTEGYQGLLAGFWPTMLRDVPYTALQFSFFSSAK
DEYRRYTGKQDINDAEATFLGIGVGAAAATLTNPFDVIKTRFMIQGTGSE
RKYHSILQCFSRLVKEEGLSVLMRGVFARVLWVGPGSGITLAVYERTSKC
FRVKWELEESSPVYSPA*

spliced messenger RNA

>Gchil4073.t1 ID=Gchil4073.t1|Name=Gchil4073.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=954bp|location=Sequence derived from alignment at tig00004373_pilon:321797..322750+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACGAGAACCCACCGTCGCGTCAGGGCCAGGATCGGAGAAATGGAC
CATAATCTCCGATCTTCTAGCTGGTGGGTTGGCCGGTATATGCTGTGACG
CTGTTCTCCATCCAGTGGATACTGTCAAGTCACGCCTTCATGTGCAACAA
GGCCCACCGTTCAAATACCAATCAATGTTACACGGCTTCAGGCTAATCAT
CAGACAAGAAGGTCTTCAAAAAGGGCTGTACGCAGGCTTTGGGGCCGTCA
TCGCAGGCACAATTCCCAGTCACGCCGTCATTTTTGCAAGCTACAAGGCG
TTGAAGAGAAGGGGTGAGGATGGTATTTCAGATGAACAACAGCTGGCCGC
GGTCGATTTTGTAAGCGCTTCCATTGGTGAAGTCTTTGCTCTGCCGTTTT
ACGTTCCTGCTGATGTTATCGCAAAGCGAATGCAAGTCGCAAGACTAGGT
CCAGCGCGGAACTATAAATCAACAATACATGCCGCGCAATCAATCCTAAA
AACAGAAGGTTATCAAGGCTTGCTAGCCGGATTCTGGCCCACAATGTTGC
GTGATGTACCGTATACAGCGTTGCAATTCTCCTTTTTCAGTTCTGCCAAG
GATGAATATCGAAGATACACTGGGAAACAAGATATAAATGATGCTGAAGC
CACATTCCTCGGCATCGGGGTTGGAGCCGCGGCAGCTACATTAACAAATC
CGTTCGATGTTATTAAGACACGGTTCATGATTCAGGGTACAGGCTCTGAA
AGAAAGTACCATTCAATTTTGCAGTGCTTTAGCAGACTTGTTAAAGAGGA
AGGGCTCTCTGTTTTGATGCGCGGAGTGTTTGCTAGAGTGCTATGGGTGG
GTCCAGGCAGTGGTATAACGCTTGCTGTATATGAGAGGACATCCAAGTGT
TTTCGTGTCAAGTGGGAATTAGAAGAATCATCACCTGTATATTCCCCGGC
GTGA

protein sequence of Gchil4073.t1

>Gchil4073.t1 ID=Gchil4073.t1|Name=Gchil4073.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=318bp
MGREPTVASGPGSEKWTIISDLLAGGLAGICCDAVLHPVDTVKSRLHVQQ
GPPFKYQSMLHGFRLIIRQEGLQKGLYAGFGAVIAGTIPSHAVIFASYKA
LKRRGEDGISDEQQLAAVDFVSASIGEVFALPFYVPADVIAKRMQVARLG
PARNYKSTIHAAQSILKTEGYQGLLAGFWPTMLRDVPYTALQFSFFSSAK
DEYRRYTGKQDINDAEATFLGIGVGAAAATLTNPFDVIKTRFMIQGTGSE
RKYHSILQCFSRLVKEEGLSVLMRGVFARVLWVGPGSGITLAVYERTSKC
FRVKWELEESSPVYSPA*

mRNA from alignment at tig00004373_pilon:321797..322750+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4073.t1 ID=Gchil4073.t1|Name=Gchil4073.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=954bp|location=Sequence derived from alignment at tig00004373_pilon:321797..322750+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGACGAGAACCCACCGTCGCGTCAGGGCCAGGATCGGAGAAATGGAC
CATAATCTCCGATCTTCTAGCTGGTGGGTTGGCCGGTATATGCTGTGACG
CTGTTCTCCATCCAGTGGATACTGTCAAGTCACGCCTTCATGTGCAACAA
GGCCCACCGTTCAAATACCAATCAATGTTACACGGCTTCAGGCTAATCAT
CAGACAAGAAGGTCTTCAAAAAGGGCTGTACGCAGGCTTTGGGGCCGTCA
TCGCAGGCACAATTCCCAGTCACGCCGTCATTTTTGCAAGCTACAAGGCG
TTGAAGAGAAGGGGTGAGGATGGTATTTCAGATGAACAACAGCTGGCCGC
GGTCGATTTTGTAAGCGCTTCCATTGGTGAAGTCTTTGCTCTGCCGTTTT
ACGTTCCTGCTGATGTTATCGCAAAGCGAATGCAAGTCGCAAGACTAGGT
CCAGCGCGGAACTATAAATCAACAATACATGCCGCGCAATCAATCCTAAA
AACAGAAGGTTATCAAGGCTTGCTAGCCGGATTCTGGCCCACAATGTTGC
GTGATGTACCGTATACAGCGTTGCAATTCTCCTTTTTCAGTTCTGCCAAG
GATGAATATCGAAGATACACTGGGAAACAAGATATAAATGATGCTGAAGC
CACATTCCTCGGCATCGGGGTTGGAGCCGCGGCAGCTACATTAACAAATC
CGTTCGATGTTATTAAGACACGGTTCATGATTCAGGGTACAGGCTCTGAA
AGAAAGTACCATTCAATTTTGCAGTGCTTTAGCAGACTTGTTAAAGAGGA
AGGGCTCTCTGTTTTGATGCGCGGAGTGTTTGCTAGAGTGCTATGGGTGG
GTCCAGGCAGTGGTATAACGCTTGCTGTATATGAGAGGACATCCAAGTGT
TTTCGTGTCAAGTGGGAATTAGAAGAATCATCACCTGTATATTCCCCGGC
GTGA

Coding sequence (CDS) from alignment at tig00004373_pilon:321797..322750+

>Gchil4073.t1 ID=Gchil4073.t1|Name=Gchil4073.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=954bp|location=Sequence derived from alignment at tig00004373_pilon:321797..322750+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGACGAGAACCCACCGTCGCGTCAGGGCCAGGATCGGAGAAATGGAC
CATAATCTCCGATCTTCTAGCTGGTGGGTTGGCCGGTATATGCTGTGACG
CTGTTCTCCATCCAGTGGATACTGTCAAGTCACGCCTTCATGTGCAACAA
GGCCCACCGTTCAAATACCAATCAATGTTACACGGCTTCAGGCTAATCAT
CAGACAAGAAGGTCTTCAAAAAGGGCTGTACGCAGGCTTTGGGGCCGTCA
TCGCAGGCACAATTCCCAGTCACGCCGTCATTTTTGCAAGCTACAAGGCG
TTGAAGAGAAGGGGTGAGGATGGTATTTCAGATGAACAACAGCTGGCCGC
GGTCGATTTTGTAAGCGCTTCCATTGGTGAAGTCTTTGCTCTGCCGTTTT
ACGTTCCTGCTGATGTTATCGCAAAGCGAATGCAAGTCGCAAGACTAGGT
CCAGCGCGGAACTATAAATCAACAATACATGCCGCGCAATCAATCCTAAA
AACAGAAGGTTATCAAGGCTTGCTAGCCGGATTCTGGCCCACAATGTTGC
GTGATGTACCGTATACAGCGTTGCAATTCTCCTTTTTCAGTTCTGCCAAG
GATGAATATCGAAGATACACTGGGAAACAAGATATAAATGATGCTGAAGC
CACATTCCTCGGCATCGGGGTTGGAGCCGCGGCAGCTACATTAACAAATC
CGTTCGATGTTATTAAGACACGGTTCATGATTCAGGGTACAGGCTCTGAA
AGAAAGTACCATTCAATTTTGCAGTGCTTTAGCAGACTTGTTAAAGAGGA
AGGGCTCTCTGTTTTGATGCGCGGAGTGTTTGCTAGAGTGCTATGGGTGG
GTCCAGGCAGTGGTATAACGCTTGCTGTATATGAGAGGACATCCAAGTGT
TTTCGTGTCAAGTGGGAATTAGAAGAATCATCACCTGTATATTCCCCGGC
GTGA