Gchil4072.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4072.t1
Unique NameGchil4072.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length355
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:319814..320878 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog248742.XP_005650835.1
PFAMsTfb4
Max annot lvl3041|Chlorophyta
KEGG koko:K03143
KEGG Pathwayko03022,ko03420,ko05203,map03022,map03420,map05203
KEGG ModuleM00290
Evalue2.44e-42
EggNOG OGsCOG5242@1|root,KOG2487@2759|Eukaryota,37KH5@33090|Viridiplantae,34KNC@3041|Chlorophyta
DescriptionTranscription factor Tfb4
COG categoryKL
BRITEko00000,ko00001,ko00002,ko03021,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4072Gchil4072Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 319814..320878 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4072.t1.stop1Gchil4072.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 319814..319816 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4072.t1.CDS1Gchil4072.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 319814..320878 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4072.t1.exon1Gchil4072.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 319814..320878 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4072.t1.start1Gchil4072.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 320876..320878 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4072.t1Gchil4072.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 319814..320878 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4072.t1 ID=Gchil4072.t1|Name=Gchil4072.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=355bp
MRDTTDPFRVKAADDAQDLLILILDTSIRSWLHVSGKDPKDISGSVHALQ
SVTEQLLVFLNTFLLLHESNRICVILSGSDKASLIYPVFPEPENLSPDYD
ESVEDAAFDALIGYASHHHTITDPRQIVQDVKKAVEEGVKASMREQGDPN
ACYRHSCVSSALATALCLLNRARRIQIERAAMSLGQDKERLEIVEQDVHF
NGRILSVLGGSDAPDQYVSVMNCIFSAQRLGVPIDSCMLVKDKDSTYFQQ
AARLTNGVYMRPEEFSTSAPNSLLQYFQTVFLIDKQSRDFLAMPVVDKVD
FRASCMETNEIIDNGFTCSICLSTFSPDVGKGAAMCPVCNARFAILNPRK
RSKP*
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spliced messenger RNA

>Gchil4072.t1 ID=Gchil4072.t1|Name=Gchil4072.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1065bp|location=Sequence derived from alignment at tig00004373_pilon:319814..320878- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGACACGACAGATCCATTCAGAGTCAAAGCCGCAGACGATGCACA
AGACCTTCTCATCCTCATCCTCGACACATCTATTCGCTCGTGGCTTCATG
TATCGGGTAAAGACCCAAAGGATATAAGTGGTTCCGTTCACGCTCTACAA
TCAGTTACGGAACAATTACTTGTGTTCTTGAATACTTTTCTGTTGCTGCA
TGAATCAAATCGGATCTGCGTGATACTCTCCGGTTCGGATAAGGCAAGTC
TCATTTACCCAGTCTTTCCAGAACCAGAAAATCTCTCGCCTGACTATGAT
GAATCTGTTGAAGATGCTGCATTCGATGCTCTTATAGGATATGCGTCTCA
TCATCACACCATCACAGACCCAAGACAGATAGTTCAAGATGTGAAGAAGG
CCGTTGAAGAAGGTGTCAAGGCTTCTATGCGAGAGCAAGGAGATCCGAAC
GCGTGTTACAGGCATTCATGCGTAAGTTCCGCACTCGCAACGGCGCTATG
TCTCTTGAACAGGGCGCGTCGCATTCAAATTGAACGTGCGGCGATGAGTC
TTGGTCAGGATAAAGAGCGACTGGAGATAGTCGAGCAGGATGTTCACTTC
AATGGTCGAATACTAAGCGTGCTTGGCGGTTCTGATGCCCCGGATCAATA
TGTATCTGTAATGAATTGCATTTTCTCTGCCCAGAGATTGGGGGTGCCCA
TTGATTCTTGTATGCTGGTGAAAGACAAAGATTCTACCTATTTTCAGCAA
GCTGCTCGTCTTACAAACGGAGTATACATGCGACCCGAAGAATTTTCGAC
ATCTGCTCCGAACTCTCTGCTACAATACTTCCAAACAGTGTTTTTAATCG
ACAAGCAGAGCCGTGACTTCCTTGCGATGCCCGTCGTGGACAAGGTGGAT
TTCAGGGCGTCATGTATGGAAACAAACGAAATAATAGACAATGGTTTCAC
ATGCTCCATTTGTTTATCTACTTTCAGTCCAGACGTTGGGAAAGGAGCAG
CCATGTGCCCTGTTTGCAATGCAAGGTTTGCTATCCTGAACCCTCGCAAA
CGATCGAAGCCATAA
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protein sequence of Gchil4072.t1

>Gchil4072.t1 ID=Gchil4072.t1|Name=Gchil4072.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=355bp
MRDTTDPFRVKAADDAQDLLILILDTSIRSWLHVSGKDPKDISGSVHALQ
SVTEQLLVFLNTFLLLHESNRICVILSGSDKASLIYPVFPEPENLSPDYD
ESVEDAAFDALIGYASHHHTITDPRQIVQDVKKAVEEGVKASMREQGDPN
ACYRHSCVSSALATALCLLNRARRIQIERAAMSLGQDKERLEIVEQDVHF
NGRILSVLGGSDAPDQYVSVMNCIFSAQRLGVPIDSCMLVKDKDSTYFQQ
AARLTNGVYMRPEEFSTSAPNSLLQYFQTVFLIDKQSRDFLAMPVVDKVD
FRASCMETNEIIDNGFTCSICLSTFSPDVGKGAAMCPVCNARFAILNPRK
RSKP*
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mRNA from alignment at tig00004373_pilon:319814..320878-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4072.t1 ID=Gchil4072.t1|Name=Gchil4072.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1065bp|location=Sequence derived from alignment at tig00004373_pilon:319814..320878- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCGACACGACAGATCCATTCAGAGTCAAAGCCGCAGACGATGCACA
AGACCTTCTCATCCTCATCCTCGACACATCTATTCGCTCGTGGCTTCATG
TATCGGGTAAAGACCCAAAGGATATAAGTGGTTCCGTTCACGCTCTACAA
TCAGTTACGGAACAATTACTTGTGTTCTTGAATACTTTTCTGTTGCTGCA
TGAATCAAATCGGATCTGCGTGATACTCTCCGGTTCGGATAAGGCAAGTC
TCATTTACCCAGTCTTTCCAGAACCAGAAAATCTCTCGCCTGACTATGAT
GAATCTGTTGAAGATGCTGCATTCGATGCTCTTATAGGATATGCGTCTCA
TCATCACACCATCACAGACCCAAGACAGATAGTTCAAGATGTGAAGAAGG
CCGTTGAAGAAGGTGTCAAGGCTTCTATGCGAGAGCAAGGAGATCCGAAC
GCGTGTTACAGGCATTCATGCGTAAGTTCCGCACTCGCAACGGCGCTATG
TCTCTTGAACAGGGCGCGTCGCATTCAAATTGAACGTGCGGCGATGAGTC
TTGGTCAGGATAAAGAGCGACTGGAGATAGTCGAGCAGGATGTTCACTTC
AATGGTCGAATACTAAGCGTGCTTGGCGGTTCTGATGCCCCGGATCAATA
TGTATCTGTAATGAATTGCATTTTCTCTGCCCAGAGATTGGGGGTGCCCA
TTGATTCTTGTATGCTGGTGAAAGACAAAGATTCTACCTATTTTCAGCAA
GCTGCTCGTCTTACAAACGGAGTATACATGCGACCCGAAGAATTTTCGAC
ATCTGCTCCGAACTCTCTGCTACAATACTTCCAAACAGTGTTTTTAATCG
ACAAGCAGAGCCGTGACTTCCTTGCGATGCCCGTCGTGGACAAGGTGGAT
TTCAGGGCGTCATGTATGGAAACAAACGAAATAATAGACAATGGTTTCAC
ATGCTCCATTTGTTTATCTACTTTCAGTCCAGACGTTGGGAAAGGAGCAG
CCATGTGCCCTGTTTGCAATGCAAGGTTTGCTATCCTGAACCCTCGCAAA
CGATCGAAGCCATAA
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Coding sequence (CDS) from alignment at tig00004373_pilon:319814..320878-

>Gchil4072.t1 ID=Gchil4072.t1|Name=Gchil4072.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1065bp|location=Sequence derived from alignment at tig00004373_pilon:319814..320878- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCGACACGACAGATCCATTCAGAGTCAAAGCCGCAGACGATGCACA
AGACCTTCTCATCCTCATCCTCGACACATCTATTCGCTCGTGGCTTCATG
TATCGGGTAAAGACCCAAAGGATATAAGTGGTTCCGTTCACGCTCTACAA
TCAGTTACGGAACAATTACTTGTGTTCTTGAATACTTTTCTGTTGCTGCA
TGAATCAAATCGGATCTGCGTGATACTCTCCGGTTCGGATAAGGCAAGTC
TCATTTACCCAGTCTTTCCAGAACCAGAAAATCTCTCGCCTGACTATGAT
GAATCTGTTGAAGATGCTGCATTCGATGCTCTTATAGGATATGCGTCTCA
TCATCACACCATCACAGACCCAAGACAGATAGTTCAAGATGTGAAGAAGG
CCGTTGAAGAAGGTGTCAAGGCTTCTATGCGAGAGCAAGGAGATCCGAAC
GCGTGTTACAGGCATTCATGCGTAAGTTCCGCACTCGCAACGGCGCTATG
TCTCTTGAACAGGGCGCGTCGCATTCAAATTGAACGTGCGGCGATGAGTC
TTGGTCAGGATAAAGAGCGACTGGAGATAGTCGAGCAGGATGTTCACTTC
AATGGTCGAATACTAAGCGTGCTTGGCGGTTCTGATGCCCCGGATCAATA
TGTATCTGTAATGAATTGCATTTTCTCTGCCCAGAGATTGGGGGTGCCCA
TTGATTCTTGTATGCTGGTGAAAGACAAAGATTCTACCTATTTTCAGCAA
GCTGCTCGTCTTACAAACGGAGTATACATGCGACCCGAAGAATTTTCGAC
ATCTGCTCCGAACTCTCTGCTACAATACTTCCAAACAGTGTTTTTAATCG
ACAAGCAGAGCCGTGACTTCCTTGCGATGCCCGTCGTGGACAAGGTGGAT
TTCAGGGCGTCATGTATGGAAACAAACGAAATAATAGACAATGGTTTCAC
ATGCTCCATTTGTTTATCTACTTTCAGTCCAGACGTTGGGAAAGGAGCAG
CCATGTGCCCTGTTTGCAATGCAAGGTTTGCTATCCTGAACCCTCGCAAA
CGATCGAAGCCATAA
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