Gchil4069.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4069.t1
Unique Name	Gchil4069.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	415

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:312603..313847 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703375.1
PFAMs	FAD_binding_3
Max annot lvl	2759\|Eukaryota
Evalue	2.42e-44
EggNOG OGs	COG0654@1\|root,KOG2614@2759\|Eukaryota
Description	FAD binding
COG category	CH

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4069	Gchil4069	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 312603..313847 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4069.t1.start1	Gchil4069.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 312603..312605 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4069.t1.CDS1	Gchil4069.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 312603..313847 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4069.t1.exon1	Gchil4069.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 312603..313847 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4069.t1.stop1	Gchil4069.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 313845..313847 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4069.t1	Gchil4069.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 312603..313847 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:312603..313847+
coding sequence from alignment at tig00004373_pilon:312603..313847+

mRNA sequence

>Gchil4069.t1 ID=Gchil4069.t1|Name=Gchil4069.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=415bp
MNKAIAAASVATRVPILIVGGGLGGFTAALSLHRAGIQNNIIMPMPNFTQ
KARTGVFLGGSAVRILDRLGLGSQYRALGTPLYRVQVEDTKGKQIIGFQL
DDIGTEVWTVPREYMQQLFLESIPPESVSFNTKFRSLQIQTAGVKVKILD
LNKGNSGSKEGQQSFVDTRFVIGADGLNSAVRMCMSRPVMTVPSGVFSWQ
AVVRNCNVEDFPLHMGKEIWDRRLRFGFARMTPTEVVWWAIVSDLNDIIL
RPFTPHLMRLYRKFPKAVLELIESIESDRDIRRAEMKKVWPEEYPWVDYN
SSRIALVGDAGRPRNIGNFHTSTTLSIEDSYILAHYLADQNEKGMLTVGP
SLERYGRNRDKRKAIIDQFSTRYNILSFSKSLLRKYVTKQLLHMSVEQLA
LGGMPLTVTGDSIG*

spliced messenger RNA

>Gchil4069.t1 ID=Gchil4069.t1|Name=Gchil4069.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1245bp|location=Sequence derived from alignment at tig00004373_pilon:312603..313847+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAAAGCCATTGCCGCAGCATCTGTAGCAACCAGAGTTCCCATTCT
GATTGTCGGTGGCGGTCTTGGAGGCTTCACAGCTGCACTGTCCTTACACA
GGGCGGGAATCCAAAATAACATTATCATGCCGATGCCCAACTTCACCCAG
AAAGCAAGAACTGGGGTATTCTTGGGAGGCTCAGCTGTGAGAATTCTCGA
TCGATTGGGATTGGGATCCCAATATCGTGCACTAGGAACGCCCTTGTATC
GAGTCCAGGTTGAAGATACCAAAGGAAAGCAAATCATAGGGTTCCAATTG
GACGATATCGGAACAGAGGTATGGACAGTTCCGCGGGAATACATGCAGCA
GCTTTTCCTTGAATCTATCCCCCCCGAGTCCGTTTCTTTCAACACCAAGT
TTCGCTCACTTCAAATTCAAACAGCAGGCGTCAAAGTGAAGATTCTTGAC
TTGAACAAGGGAAACTCCGGTTCTAAAGAAGGGCAGCAATCTTTTGTTGA
TACACGTTTTGTGATTGGTGCCGACGGCTTGAACTCAGCTGTGCGAATGT
GCATGTCTCGCCCCGTAATGACAGTTCCTTCAGGTGTATTCTCATGGCAA
GCTGTGGTTCGAAATTGCAACGTAGAAGACTTCCCGTTACACATGGGAAA
GGAAATTTGGGATCGACGTCTCCGATTCGGGTTTGCCAGGATGACCCCAA
CAGAAGTTGTTTGGTGGGCAATTGTTTCTGATCTCAATGACATCATTCTT
CGACCGTTCACCCCACATTTGATGCGATTGTATCGTAAGTTCCCGAAGGC
GGTTTTGGAGCTCATTGAATCTATCGAATCAGACAGAGACATACGCCGTG
CTGAGATGAAGAAAGTATGGCCTGAAGAATATCCATGGGTGGATTATAAT
TCCTCTCGAATAGCCCTTGTGGGCGACGCTGGACGGCCCAGAAACATTGG
AAACTTCCACACGAGCACGACTCTTTCCATTGAAGACAGTTATATCTTGG
CGCATTACCTTGCAGACCAGAATGAGAAAGGTATGTTAACAGTGGGGCCA
AGCTTGGAACGTTATGGGCGCAACAGAGATAAGCGTAAAGCTATCATAGA
CCAGTTCTCAACCCGTTACAATATACTTTCCTTCTCAAAATCTCTTCTTC
GAAAATACGTAACCAAGCAGTTGCTCCACATGTCAGTTGAACAACTTGCT
CTTGGTGGAATGCCTCTGACAGTGACAGGTGACTCGATTGGATAA

protein sequence of Gchil4069.t1

>Gchil4069.t1 ID=Gchil4069.t1|Name=Gchil4069.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=415bp
MNKAIAAASVATRVPILIVGGGLGGFTAALSLHRAGIQNNIIMPMPNFTQ
KARTGVFLGGSAVRILDRLGLGSQYRALGTPLYRVQVEDTKGKQIIGFQL
DDIGTEVWTVPREYMQQLFLESIPPESVSFNTKFRSLQIQTAGVKVKILD
LNKGNSGSKEGQQSFVDTRFVIGADGLNSAVRMCMSRPVMTVPSGVFSWQ
AVVRNCNVEDFPLHMGKEIWDRRLRFGFARMTPTEVVWWAIVSDLNDIIL
RPFTPHLMRLYRKFPKAVLELIESIESDRDIRRAEMKKVWPEEYPWVDYN
SSRIALVGDAGRPRNIGNFHTSTTLSIEDSYILAHYLADQNEKGMLTVGP
SLERYGRNRDKRKAIIDQFSTRYNILSFSKSLLRKYVTKQLLHMSVEQLA
LGGMPLTVTGDSIG*

mRNA from alignment at tig00004373_pilon:312603..313847+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4069.t1 ID=Gchil4069.t1|Name=Gchil4069.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1245bp|location=Sequence derived from alignment at tig00004373_pilon:312603..313847+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACAAAGCCATTGCCGCAGCATCTGTAGCAACCAGAGTTCCCATTCT
GATTGTCGGTGGCGGTCTTGGAGGCTTCACAGCTGCACTGTCCTTACACA
GGGCGGGAATCCAAAATAACATTATCATGCCGATGCCCAACTTCACCCAG
AAAGCAAGAACTGGGGTATTCTTGGGAGGCTCAGCTGTGAGAATTCTCGA
TCGATTGGGATTGGGATCCCAATATCGTGCACTAGGAACGCCCTTGTATC
GAGTCCAGGTTGAAGATACCAAAGGAAAGCAAATCATAGGGTTCCAATTG
GACGATATCGGAACAGAGGTATGGACAGTTCCGCGGGAATACATGCAGCA
GCTTTTCCTTGAATCTATCCCCCCCGAGTCCGTTTCTTTCAACACCAAGT
TTCGCTCACTTCAAATTCAAACAGCAGGCGTCAAAGTGAAGATTCTTGAC
TTGAACAAGGGAAACTCCGGTTCTAAAGAAGGGCAGCAATCTTTTGTTGA
TACACGTTTTGTGATTGGTGCCGACGGCTTGAACTCAGCTGTGCGAATGT
GCATGTCTCGCCCCGTAATGACAGTTCCTTCAGGTGTATTCTCATGGCAA
GCTGTGGTTCGAAATTGCAACGTAGAAGACTTCCCGTTACACATGGGAAA
GGAAATTTGGGATCGACGTCTCCGATTCGGGTTTGCCAGGATGACCCCAA
CAGAAGTTGTTTGGTGGGCAATTGTTTCTGATCTCAATGACATCATTCTT
CGACCGTTCACCCCACATTTGATGCGATTGTATCGTAAGTTCCCGAAGGC
GGTTTTGGAGCTCATTGAATCTATCGAATCAGACAGAGACATACGCCGTG
CTGAGATGAAGAAAGTATGGCCTGAAGAATATCCATGGGTGGATTATAAT
TCCTCTCGAATAGCCCTTGTGGGCGACGCTGGACGGCCCAGAAACATTGG
AAACTTCCACACGAGCACGACTCTTTCCATTGAAGACAGTTATATCTTGG
CGCATTACCTTGCAGACCAGAATGAGAAAGGTATGTTAACAGTGGGGCCA
AGCTTGGAACGTTATGGGCGCAACAGAGATAAGCGTAAAGCTATCATAGA
CCAGTTCTCAACCCGTTACAATATACTTTCCTTCTCAAAATCTCTTCTTC
GAAAATACGTAACCAAGCAGTTGCTCCACATGTCAGTTGAACAACTTGCT
CTTGGTGGAATGCCTCTGACAGTGACAGGTGACTCGATTGGATAA

Coding sequence (CDS) from alignment at tig00004373_pilon:312603..313847+

>Gchil4069.t1 ID=Gchil4069.t1|Name=Gchil4069.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1245bp|location=Sequence derived from alignment at tig00004373_pilon:312603..313847+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACAAAGCCATTGCCGCAGCATCTGTAGCAACCAGAGTTCCCATTCT
GATTGTCGGTGGCGGTCTTGGAGGCTTCACAGCTGCACTGTCCTTACACA
GGGCGGGAATCCAAAATAACATTATCATGCCGATGCCCAACTTCACCCAG
AAAGCAAGAACTGGGGTATTCTTGGGAGGCTCAGCTGTGAGAATTCTCGA
TCGATTGGGATTGGGATCCCAATATCGTGCACTAGGAACGCCCTTGTATC
GAGTCCAGGTTGAAGATACCAAAGGAAAGCAAATCATAGGGTTCCAATTG
GACGATATCGGAACAGAGGTATGGACAGTTCCGCGGGAATACATGCAGCA
GCTTTTCCTTGAATCTATCCCCCCCGAGTCCGTTTCTTTCAACACCAAGT
TTCGCTCACTTCAAATTCAAACAGCAGGCGTCAAAGTGAAGATTCTTGAC
TTGAACAAGGGAAACTCCGGTTCTAAAGAAGGGCAGCAATCTTTTGTTGA
TACACGTTTTGTGATTGGTGCCGACGGCTTGAACTCAGCTGTGCGAATGT
GCATGTCTCGCCCCGTAATGACAGTTCCTTCAGGTGTATTCTCATGGCAA
GCTGTGGTTCGAAATTGCAACGTAGAAGACTTCCCGTTACACATGGGAAA
GGAAATTTGGGATCGACGTCTCCGATTCGGGTTTGCCAGGATGACCCCAA
CAGAAGTTGTTTGGTGGGCAATTGTTTCTGATCTCAATGACATCATTCTT
CGACCGTTCACCCCACATTTGATGCGATTGTATCGTAAGTTCCCGAAGGC
GGTTTTGGAGCTCATTGAATCTATCGAATCAGACAGAGACATACGCCGTG
CTGAGATGAAGAAAGTATGGCCTGAAGAATATCCATGGGTGGATTATAAT
TCCTCTCGAATAGCCCTTGTGGGCGACGCTGGACGGCCCAGAAACATTGG
AAACTTCCACACGAGCACGACTCTTTCCATTGAAGACAGTTATATCTTGG
CGCATTACCTTGCAGACCAGAATGAGAAAGGTATGTTAACAGTGGGGCCA
AGCTTGGAACGTTATGGGCGCAACAGAGATAAGCGTAAAGCTATCATAGA
CCAGTTCTCAACCCGTTACAATATACTTTCCTTCTCAAAATCTCTTCTTC
GAAAATACGTAACCAAGCAGTTGCTCCACATGTCAGTTGAACAACTTGCT
CTTGGTGGAATGCCTCTGACAGTGACAGGTGACTCGATTGGATAA