Gchil4055.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4055.t1
Unique NameGchil4055.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length297
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:285568..286570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4055Gchil4055Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 285568..286570 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4055.t1Gchil4055.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 285568..286570 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4055.t1.start1Gchil4055.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 285568..285570 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4055.t1.CDS1Gchil4055.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 285568..286360 +
Gchil4055.t1.CDS2Gchil4055.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 286473..286570 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4055.t1.exon1Gchil4055.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 285568..286360 +
Gchil4055.t1.exon2Gchil4055.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 286473..286570 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4055.t1.intron1Gchil4055.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 286361..286472 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4055.t1.stop1Gchil4055.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 286568..286570 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4055.t1 ID=Gchil4055.t1|Name=Gchil4055.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=297bp
MWRSGVCNANWTITEKELELDLKEVTLKAMKKISGEIHVWMPPWRRMGWF
AKLLRWIKAVTKGDFDDQEVYRSFRKYVDHHHSVVWSCELDLSKTKAQRT
ASGPKVERVFIKASQPLLQEAQRTATIARVLSELAVVPDIIALHERDGVL
IQRDARSFELPIDKVDRLVLLNTIVRMQKTSLDRLEELQAGGLQVRDSEW
LLVNVSRLFCHEGLDKVVRGGKEYKDILQELRSREEEAMEICKRISSFGV
PNTLVHRDLTPDNCVTLPLSIGLEALKACDERRRILEHVEAGSNSG*
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spliced messenger RNA

>Gchil4055.t1 ID=Gchil4055.t1|Name=Gchil4055.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=891bp|location=Sequence derived from alignment at tig00004373_pilon:285568..286570+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGAGAAGCGGGGTGTGCAACGCCAATTGGACAATAACGGAGAAAGA
GCTTGAACTAGATTTGAAAGAGGTGACATTGAAAGCGATGAAAAAGATCA
GCGGAGAAATACATGTGTGGATGCCACCATGGCGTCGCATGGGGTGGTTT
GCCAAGCTTTTGCGATGGATAAAGGCGGTGACAAAAGGTGACTTTGACGA
TCAGGAGGTGTACCGCTCGTTTAGAAAGTATGTAGACCATCATCATTCTG
TGGTGTGGTCCTGTGAGCTAGACTTATCGAAAACAAAAGCACAAAGGACT
GCTTCGGGACCCAAGGTCGAAAGAGTTTTCATAAAGGCGTCGCAACCGTT
ACTGCAAGAAGCGCAACGAACGGCGACGATCGCGAGGGTGCTTAGCGAGC
TGGCAGTAGTTCCAGACATTATCGCATTGCACGAAAGAGATGGTGTTCTA
ATACAGCGAGATGCCCGGAGCTTTGAATTGCCCATAGACAAAGTTGATAG
ATTGGTGTTGTTGAACACCATTGTAAGAATGCAGAAGACATCTCTTGACC
GTTTGGAGGAACTGCAGGCTGGGGGGCTTCAGGTACGAGATAGTGAGTGG
CTTTTGGTCAACGTTTCTCGCCTTTTTTGTCACGAAGGACTAGACAAAGT
AGTGAGGGGCGGCAAAGAATATAAAGATATCCTCCAAGAACTTCGAAGTC
GCGAGGAAGAGGCGATGGAGATATGTAAGAGGATATCCAGCTTTGGGGTT
CCGAATACTTTAGTCCATAGAGATCTGACTCCTGACAACTGCGTGACACT
GCCTCTGAGCATTGGTCTGGAAGCATTGAAAGCCTGTGATGAACGAAGAC
GAATTTTGGAACATGTTGAAGCTGGTTCCAATTCTGGATGA
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protein sequence of Gchil4055.t1

>Gchil4055.t1 ID=Gchil4055.t1|Name=Gchil4055.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=297bp
MWRSGVCNANWTITEKELELDLKEVTLKAMKKISGEIHVWMPPWRRMGWF
AKLLRWIKAVTKGDFDDQEVYRSFRKYVDHHHSVVWSCELDLSKTKAQRT
ASGPKVERVFIKASQPLLQEAQRTATIARVLSELAVVPDIIALHERDGVL
IQRDARSFELPIDKVDRLVLLNTIVRMQKTSLDRLEELQAGGLQVRDSEW
LLVNVSRLFCHEGLDKVVRGGKEYKDILQELRSREEEAMEICKRISSFGV
PNTLVHRDLTPDNCVTLPLSIGLEALKACDERRRILEHVEAGSNSG*
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mRNA from alignment at tig00004373_pilon:285568..286570+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4055.t1 ID=Gchil4055.t1|Name=Gchil4055.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1003bp|location=Sequence derived from alignment at tig00004373_pilon:285568..286570+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGGAGAAGCGGGGTGTGCAACGCCAATTGGACAATAACGGAGAAAGA
GCTTGAACTAGATTTGAAAGAGGTGACATTGAAAGCGATGAAAAAGATCA
GCGGAGAAATACATGTGTGGATGCCACCATGGCGTCGCATGGGGTGGTTT
GCCAAGCTTTTGCGATGGATAAAGGCGGTGACAAAAGGTGACTTTGACGA
TCAGGAGGTGTACCGCTCGTTTAGAAAGTATGTAGACCATCATCATTCTG
TGGTGTGGTCCTGTGAGCTAGACTTATCGAAAACAAAAGCACAAAGGACT
GCTTCGGGACCCAAGGTCGAAAGAGTTTTCATAAAGGCGTCGCAACCGTT
ACTGCAAGAAGCGCAACGAACGGCGACGATCGCGAGGGTGCTTAGCGAGC
TGGCAGTAGTTCCAGACATTATCGCATTGCACGAAAGAGATGGTGTTCTA
ATACAGCGAGATGCCCGGAGCTTTGAATTGCCCATAGACAAAGTTGATAG
ATTGGTGTTGTTGAACACCATTGTAAGAATGCAGAAGACATCTCTTGACC
GTTTGGAGGAACTGCAGGCTGGGGGGCTTCAGGTACGAGATAGTGAGTGG
CTTTTGGTCAACGTTTCTCGCCTTTTTTGTCACGAAGGACTAGACAAAGT
AGTGAGGGGCGGCAAAGAATATAAAGATATCCTCCAAGAACTTCGAAGTC
GCGAGGAAGAGGCGATGGAGATATGTAAGAGGATATCCAGCTTTGGGGTT
CCGAATACTTTAGTCCATAGAGATCTGACTCCTGACAACTGCGGTAGGAG
AAGATGTATGGGAGGAAATGGTTATCACGTTTTTGACTGGAGCTTTTCGC
ATATAGGACATCCATTCATAGATGTTCGTGTTTTTCGGGTCTTTTTCTTC
GAAAGTGACACTGCCTCTGAGCATTGGTCTGGAAGCATTGAAAGCCTGTG
ATGAACGAAGACGAATTTTGGAACATGTTGAAGCTGGTTCCAATTCTGGA
TGA
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Coding sequence (CDS) from alignment at tig00004373_pilon:285568..286570+

>Gchil4055.t1 ID=Gchil4055.t1|Name=Gchil4055.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=891bp|location=Sequence derived from alignment at tig00004373_pilon:285568..286570+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGGAGAAGCGGGGTGTGCAACGCCAATTGGACAATAACGGAGAAAGA
GCTTGAACTAGATTTGAAAGAGGTGACATTGAAAGCGATGAAAAAGATCA
GCGGAGAAATACATGTGTGGATGCCACCATGGCGTCGCATGGGGTGGTTT
GCCAAGCTTTTGCGATGGATAAAGGCGGTGACAAAAGGTGACTTTGACGA
TCAGGAGGTGTACCGCTCGTTTAGAAAGTATGTAGACCATCATCATTCTG
TGGTGTGGTCCTGTGAGCTAGACTTATCGAAAACAAAAGCACAAAGGACT
GCTTCGGGACCCAAGGTCGAAAGAGTTTTCATAAAGGCGTCGCAACCGTT
ACTGCAAGAAGCGCAACGAACGGCGACGATCGCGAGGGTGCTTAGCGAGC
TGGCAGTAGTTCCAGACATTATCGCATTGCACGAAAGAGATGGTGTTCTA
ATACAGCGAGATGCCCGGAGCTTTGAATTGCCCATAGACAAAGTTGATAG
ATTGGTGTTGTTGAACACCATTGTAAGAATGCAGAAGACATCTCTTGACC
GTTTGGAGGAACTGCAGGCTGGGGGGCTTCAGGTACGAGATAGTGAGTGG
CTTTTGGTCAACGTTTCTCGCCTTTTTTGTCACGAAGGACTAGACAAAGT
AGTGAGGGGCGGCAAAGAATATAAAGATATCCTCCAAGAACTTCGAAGTC
GCGAGGAAGAGGCGATGGAGATATGTAAGAGGATATCCAGCTTTGGGGTT
CCGAATACTTTAGTCCATAGAGATCTGACTCCTGACAACTGCGTGACACT
GCCTCTGAGCATTGGTCTGGAAGCATTGAAAGCCTGTGATGAACGAAGAC
GAATTTTGGAACATGTTGAAGCTGGTTCCAATTCTGGATGA
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