Gchil4052.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4052.t1
Unique Name	Gchil4052.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	352

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:241357..242412 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704576.1
Preferred name	IAH1
PFAMs	Lipase_GDSL_2
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K05760
KEGG Pathway	ko04062,ko04370,ko04510,ko04670,ko04810,ko05100,ko05165,ko05203,ko05205,map04062,map04370,map04510,map04670,map04810,map05100,map05165,map05203,map05205
GOs	GO:0003674,GO:0003824,GO:0006082,GO:0006083,GO:0006084,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0016787,GO:0016788,GO:0016999,GO:0017144,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035383,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564
Evalue	9.82e-41
EggNOG OGs	COG0214@1\|root,KOG3035@2759\|Eukaryota
Description	lipid catabolic process
COG category	H
BRITE	ko00000,ko00001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4052	Gchil4052	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 241357..242412 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4052.t1.stop1	Gchil4052.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 241357..241359 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4052.t1.CDS1	Gchil4052.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 241357..242412 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4052.t1.exon1	Gchil4052.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 241357..242412 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4052.t1.start1	Gchil4052.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 242410..242412 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4052.t1	Gchil4052.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 241357..242412 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:241357..242412-
coding sequence from alignment at tig00004373_pilon:241357..242412-

mRNA sequence

>Gchil4052.t1 ID=Gchil4052.t1|Name=Gchil4052.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=352bp
MMSATPEREALSQPLPPPQPPLSLSDPPFQPPATPPLPQIVHGIDPDDDD
HHTHDDHHHHRSPRNSQSSLLRESVAEAFSTLSTRVSRAVTLNKPSSPRA
PPSPELTFSQLPSVLLFGDSITEQSVSSSNPNAPGWSALLREAYSARVEL
FVRGFSGYNTRWALHVFPRLIQPFRHTDTLSLQTVVIFFGANDATIPTSP
QHVPLDSYAHNLATLVHAVKALPSNPVPVLVTPPALGPSRHAIDDQRRVQ
LTAKYAEACVETGRRLAVPVVDLHAAMVGRVCDEQGVDIFLSDGLHLAPE
GNRLVYDLLAEVFAECVPEVCPRNTITPSYPHWGEIDPDNPAEMLGNTPL
I*

spliced messenger RNA

>Gchil4052.t1 ID=Gchil4052.t1|Name=Gchil4052.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1056bp|location=Sequence derived from alignment at tig00004373_pilon:241357..242412- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGTCCGCCACGCCCGAGCGCGAGGCGCTCTCGCAGCCGCTCCCTCC
CCCACAGCCGCCGCTCTCCCTCTCCGACCCGCCGTTCCAACCGCCCGCCA
CCCCCCCTCTCCCCCAAATAGTCCACGGCATCGACCCGGACGATGATGAC
CACCACACCCACGACGACCACCATCACCACCGTTCGCCCCGGAACTCGCA
ATCATCTCTGTTGCGCGAATCTGTAGCCGAAGCATTCTCCACGCTCTCCA
CCCGCGTCTCGCGCGCCGTCACTCTCAACAAGCCCTCATCCCCGCGCGCG
CCGCCCAGCCCCGAGCTCACCTTTTCACAGCTTCCGTCTGTGCTTCTCTT
CGGCGATAGCATCACCGAGCAGTCCGTGTCGAGCTCCAATCCTAACGCCC
CCGGCTGGTCCGCGCTGCTGCGCGAGGCCTACAGCGCACGTGTCGAGCTC
TTCGTGCGAGGCTTCTCAGGCTACAACACGCGTTGGGCGCTTCATGTGTT
CCCGCGCCTCATACAGCCCTTTCGGCACACAGATACGCTTTCGCTGCAAA
CTGTCGTCATCTTCTTTGGCGCAAACGACGCCACCATTCCCACCAGTCCG
CAACATGTCCCACTGGATTCTTACGCCCACAACTTGGCCACCCTCGTGCA
CGCCGTCAAAGCGCTACCGTCGAACCCGGTCCCGGTCTTGGTCACACCGC
CGGCGCTTGGCCCCTCGCGTCATGCTATCGACGACCAACGCCGCGTTCAA
CTAACAGCAAAGTATGCTGAGGCCTGCGTTGAGACCGGCAGACGCCTGGC
CGTGCCCGTCGTAGATTTGCATGCCGCCATGGTCGGCCGCGTCTGTGATG
AACAAGGCGTCGACATCTTCTTGTCAGACGGATTGCATCTTGCCCCGGAG
GGAAATCGTTTAGTTTATGACCTCTTGGCAGAGGTCTTCGCGGAATGCGT
GCCCGAGGTGTGTCCGAGGAATACTATTACCCCTTCGTATCCGCACTGGG
GAGAGATTGATCCTGACAACCCGGCCGAAATGCTGGGCAATACTCCTTTG
ATATAG

protein sequence of Gchil4052.t1

>Gchil4052.t1 ID=Gchil4052.t1|Name=Gchil4052.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=352bp
MMSATPEREALSQPLPPPQPPLSLSDPPFQPPATPPLPQIVHGIDPDDDD
HHTHDDHHHHRSPRNSQSSLLRESVAEAFSTLSTRVSRAVTLNKPSSPRA
PPSPELTFSQLPSVLLFGDSITEQSVSSSNPNAPGWSALLREAYSARVEL
FVRGFSGYNTRWALHVFPRLIQPFRHTDTLSLQTVVIFFGANDATIPTSP
QHVPLDSYAHNLATLVHAVKALPSNPVPVLVTPPALGPSRHAIDDQRRVQ
LTAKYAEACVETGRRLAVPVVDLHAAMVGRVCDEQGVDIFLSDGLHLAPE
GNRLVYDLLAEVFAECVPEVCPRNTITPSYPHWGEIDPDNPAEMLGNTPL
I*

mRNA from alignment at tig00004373_pilon:241357..242412-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4052.t1 ID=Gchil4052.t1|Name=Gchil4052.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1056bp|location=Sequence derived from alignment at tig00004373_pilon:241357..242412- (Gracilaria chilensis NLEC103_M9 male)
ATGATGTCCGCCACGCCCGAGCGCGAGGCGCTCTCGCAGCCGCTCCCTCC
CCCACAGCCGCCGCTCTCCCTCTCCGACCCGCCGTTCCAACCGCCCGCCA
CCCCCCCTCTCCCCCAAATAGTCCACGGCATCGACCCGGACGATGATGAC
CACCACACCCACGACGACCACCATCACCACCGTTCGCCCCGGAACTCGCA
ATCATCTCTGTTGCGCGAATCTGTAGCCGAAGCATTCTCCACGCTCTCCA
CCCGCGTCTCGCGCGCCGTCACTCTCAACAAGCCCTCATCCCCGCGCGCG
CCGCCCAGCCCCGAGCTCACCTTTTCACAGCTTCCGTCTGTGCTTCTCTT
CGGCGATAGCATCACCGAGCAGTCCGTGTCGAGCTCCAATCCTAACGCCC
CCGGCTGGTCCGCGCTGCTGCGCGAGGCCTACAGCGCACGTGTCGAGCTC
TTCGTGCGAGGCTTCTCAGGCTACAACACGCGTTGGGCGCTTCATGTGTT
CCCGCGCCTCATACAGCCCTTTCGGCACACAGATACGCTTTCGCTGCAAA
CTGTCGTCATCTTCTTTGGCGCAAACGACGCCACCATTCCCACCAGTCCG
CAACATGTCCCACTGGATTCTTACGCCCACAACTTGGCCACCCTCGTGCA
CGCCGTCAAAGCGCTACCGTCGAACCCGGTCCCGGTCTTGGTCACACCGC
CGGCGCTTGGCCCCTCGCGTCATGCTATCGACGACCAACGCCGCGTTCAA
CTAACAGCAAAGTATGCTGAGGCCTGCGTTGAGACCGGCAGACGCCTGGC
CGTGCCCGTCGTAGATTTGCATGCCGCCATGGTCGGCCGCGTCTGTGATG
AACAAGGCGTCGACATCTTCTTGTCAGACGGATTGCATCTTGCCCCGGAG
GGAAATCGTTTAGTTTATGACCTCTTGGCAGAGGTCTTCGCGGAATGCGT
GCCCGAGGTGTGTCCGAGGAATACTATTACCCCTTCGTATCCGCACTGGG
GAGAGATTGATCCTGACAACCCGGCCGAAATGCTGGGCAATACTCCTTTG
ATATAG

Coding sequence (CDS) from alignment at tig00004373_pilon:241357..242412-

>Gchil4052.t1 ID=Gchil4052.t1|Name=Gchil4052.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1056bp|location=Sequence derived from alignment at tig00004373_pilon:241357..242412- (Gracilaria chilensis NLEC103_M9 male)
ATGATGTCCGCCACGCCCGAGCGCGAGGCGCTCTCGCAGCCGCTCCCTCC
CCCACAGCCGCCGCTCTCCCTCTCCGACCCGCCGTTCCAACCGCCCGCCA
CCCCCCCTCTCCCCCAAATAGTCCACGGCATCGACCCGGACGATGATGAC
CACCACACCCACGACGACCACCATCACCACCGTTCGCCCCGGAACTCGCA
ATCATCTCTGTTGCGCGAATCTGTAGCCGAAGCATTCTCCACGCTCTCCA
CCCGCGTCTCGCGCGCCGTCACTCTCAACAAGCCCTCATCCCCGCGCGCG
CCGCCCAGCCCCGAGCTCACCTTTTCACAGCTTCCGTCTGTGCTTCTCTT
CGGCGATAGCATCACCGAGCAGTCCGTGTCGAGCTCCAATCCTAACGCCC
CCGGCTGGTCCGCGCTGCTGCGCGAGGCCTACAGCGCACGTGTCGAGCTC
TTCGTGCGAGGCTTCTCAGGCTACAACACGCGTTGGGCGCTTCATGTGTT
CCCGCGCCTCATACAGCCCTTTCGGCACACAGATACGCTTTCGCTGCAAA
CTGTCGTCATCTTCTTTGGCGCAAACGACGCCACCATTCCCACCAGTCCG
CAACATGTCCCACTGGATTCTTACGCCCACAACTTGGCCACCCTCGTGCA
CGCCGTCAAAGCGCTACCGTCGAACCCGGTCCCGGTCTTGGTCACACCGC
CGGCGCTTGGCCCCTCGCGTCATGCTATCGACGACCAACGCCGCGTTCAA
CTAACAGCAAAGTATGCTGAGGCCTGCGTTGAGACCGGCAGACGCCTGGC
CGTGCCCGTCGTAGATTTGCATGCCGCCATGGTCGGCCGCGTCTGTGATG
AACAAGGCGTCGACATCTTCTTGTCAGACGGATTGCATCTTGCCCCGGAG
GGAAATCGTTTAGTTTATGACCTCTTGGCAGAGGTCTTCGCGGAATGCGT
GCCCGAGGTGTGTCCGAGGAATACTATTACCCCTTCGTATCCGCACTGGG
GAGAGATTGATCCTGACAACCCGGCCGAAATGCTGGGCAATACTCCTTTG
ATATAG