Gchil4051.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4051.t1
Unique NameGchil4051.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length241
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:240437..241159 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707781.1
PFAMsFKBP_C,TPR_1,TPR_19,TPR_2
Max annot lvl2759|Eukaryota
KEGG koko:K01802,ko:K09571
KEGG Pathwayko04915,map04915
Evalue1.93e-48
EggNOG OGsCOG0545@1|root,KOG0543@2759|Eukaryota
EC5.2.1.8
DescriptionFK506 binding
COG categoryO
BRITEko00000,ko00001,ko01000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4051Gchil4051Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 240437..241159 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4051.t1.start1Gchil4051.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 240437..240439 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4051.t1.CDS1Gchil4051.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 240437..241159 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4051.t1.exon1Gchil4051.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 240437..241159 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4051.t1.stop1Gchil4051.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 241157..241159 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4051.t1Gchil4051.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 240437..241159 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4051.t1 ID=Gchil4051.t1|Name=Gchil4051.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=241bp
MAEKDVHEWDSDEPADLGELDYDYTSVQDKIAAGMREKEKGNRLFAQGKY
EAAWKQYDRCFVHIFTSKEEWAAIGSEGRRAINKFKLPCHLNRGLCRLRK
NELNDALWDFSEALRIDENNAKGLYRRGTTLIRMVRADMAKEGTDELWDL
DVAEKRAEDAKNDLYKAVRLVPNDIDVRKAIDELKDTSQKLAEHRRRYRQ
KQKELYSTFVSNLDRENRKIAEAQEDEFSDMPDLERVYID*
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spliced messenger RNA

>Gchil4051.t1 ID=Gchil4051.t1|Name=Gchil4051.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=723bp|location=Sequence derived from alignment at tig00004373_pilon:240437..241159+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGAGAAAGATGTCCACGAGTGGGATAGTGACGAACCCGCAGATCT
CGGCGAGCTAGACTACGACTACACCTCGGTGCAAGACAAAATCGCAGCCG
GTATGCGTGAAAAGGAGAAGGGCAATCGCCTCTTCGCGCAGGGCAAGTAC
GAAGCGGCATGGAAGCAGTATGACCGCTGCTTCGTGCACATATTCACTTC
CAAGGAAGAGTGGGCGGCAATCGGTTCCGAAGGCAGGCGCGCCATAAACA
AGTTCAAGCTACCCTGTCATCTGAACCGCGGCCTGTGCCGCCTCAGAAAG
AACGAGTTGAACGACGCGTTGTGGGACTTTTCAGAAGCGCTTCGCATTGA
TGAAAACAACGCCAAGGGGCTGTATAGAAGAGGTACAACGCTTATCCGCA
TGGTGCGCGCCGACATGGCTAAAGAAGGCACGGATGAGCTGTGGGATTTA
GACGTGGCCGAGAAAAGGGCCGAGGATGCAAAGAATGATCTCTACAAAGC
AGTACGACTTGTGCCTAATGATATTGACGTACGAAAAGCGATAGATGAGC
TCAAGGATACAAGCCAGAAACTGGCCGAACATCGCAGGCGTTACCGTCAA
AAACAGAAGGAGTTGTACTCCACGTTCGTATCCAACTTGGATCGTGAAAA
CCGGAAGATTGCCGAAGCGCAGGAAGATGAGTTCAGTGACATGCCCGATC
TGGAACGAGTTTACATCGACTGA
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protein sequence of Gchil4051.t1

>Gchil4051.t1 ID=Gchil4051.t1|Name=Gchil4051.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=241bp
MAEKDVHEWDSDEPADLGELDYDYTSVQDKIAAGMREKEKGNRLFAQGKY
EAAWKQYDRCFVHIFTSKEEWAAIGSEGRRAINKFKLPCHLNRGLCRLRK
NELNDALWDFSEALRIDENNAKGLYRRGTTLIRMVRADMAKEGTDELWDL
DVAEKRAEDAKNDLYKAVRLVPNDIDVRKAIDELKDTSQKLAEHRRRYRQ
KQKELYSTFVSNLDRENRKIAEAQEDEFSDMPDLERVYID*
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mRNA from alignment at tig00004373_pilon:240437..241159+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4051.t1 ID=Gchil4051.t1|Name=Gchil4051.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=723bp|location=Sequence derived from alignment at tig00004373_pilon:240437..241159+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGAGAAAGATGTCCACGAGTGGGATAGTGACGAACCCGCAGATCT
CGGCGAGCTAGACTACGACTACACCTCGGTGCAAGACAAAATCGCAGCCG
GTATGCGTGAAAAGGAGAAGGGCAATCGCCTCTTCGCGCAGGGCAAGTAC
GAAGCGGCATGGAAGCAGTATGACCGCTGCTTCGTGCACATATTCACTTC
CAAGGAAGAGTGGGCGGCAATCGGTTCCGAAGGCAGGCGCGCCATAAACA
AGTTCAAGCTACCCTGTCATCTGAACCGCGGCCTGTGCCGCCTCAGAAAG
AACGAGTTGAACGACGCGTTGTGGGACTTTTCAGAAGCGCTTCGCATTGA
TGAAAACAACGCCAAGGGGCTGTATAGAAGAGGTACAACGCTTATCCGCA
TGGTGCGCGCCGACATGGCTAAAGAAGGCACGGATGAGCTGTGGGATTTA
GACGTGGCCGAGAAAAGGGCCGAGGATGCAAAGAATGATCTCTACAAAGC
AGTACGACTTGTGCCTAATGATATTGACGTACGAAAAGCGATAGATGAGC
TCAAGGATACAAGCCAGAAACTGGCCGAACATCGCAGGCGTTACCGTCAA
AAACAGAAGGAGTTGTACTCCACGTTCGTATCCAACTTGGATCGTGAAAA
CCGGAAGATTGCCGAAGCGCAGGAAGATGAGTTCAGTGACATGCCCGATC
TGGAACGAGTTTACATCGACTGA
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Coding sequence (CDS) from alignment at tig00004373_pilon:240437..241159+

>Gchil4051.t1 ID=Gchil4051.t1|Name=Gchil4051.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=723bp|location=Sequence derived from alignment at tig00004373_pilon:240437..241159+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGAGAAAGATGTCCACGAGTGGGATAGTGACGAACCCGCAGATCT
CGGCGAGCTAGACTACGACTACACCTCGGTGCAAGACAAAATCGCAGCCG
GTATGCGTGAAAAGGAGAAGGGCAATCGCCTCTTCGCGCAGGGCAAGTAC
GAAGCGGCATGGAAGCAGTATGACCGCTGCTTCGTGCACATATTCACTTC
CAAGGAAGAGTGGGCGGCAATCGGTTCCGAAGGCAGGCGCGCCATAAACA
AGTTCAAGCTACCCTGTCATCTGAACCGCGGCCTGTGCCGCCTCAGAAAG
AACGAGTTGAACGACGCGTTGTGGGACTTTTCAGAAGCGCTTCGCATTGA
TGAAAACAACGCCAAGGGGCTGTATAGAAGAGGTACAACGCTTATCCGCA
TGGTGCGCGCCGACATGGCTAAAGAAGGCACGGATGAGCTGTGGGATTTA
GACGTGGCCGAGAAAAGGGCCGAGGATGCAAAGAATGATCTCTACAAAGC
AGTACGACTTGTGCCTAATGATATTGACGTACGAAAAGCGATAGATGAGC
TCAAGGATACAAGCCAGAAACTGGCCGAACATCGCAGGCGTTACCGTCAA
AAACAGAAGGAGTTGTACTCCACGTTCGTATCCAACTTGGATCGTGAAAA
CCGGAAGATTGCCGAAGCGCAGGAAGATGAGTTCAGTGACATGCCCGATC
TGGAACGAGTTTACATCGACTGA
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