Gchil4050.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4050.t1
Unique Name	Gchil4050.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	540

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:238303..239922 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	225117.XP_009376110.1
PFAMs	DUF773
Max annot lvl	35493\|Streptophyta
GOs	GO:0000079,GO:0001932,GO:0005575,GO:0005623,GO:0007346,GO:0008150,GO:0012505,GO:0019220,GO:0019222,GO:0031323,GO:0031399,GO:0032268,GO:0042325,GO:0043549,GO:0044464,GO:0045859,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051174,GO:0051246,GO:0051338,GO:0051726,GO:0060255,GO:0065007,GO:0065009,GO:0071900,GO:0080090,GO:1904029
Evalue	7.95e-31
EggNOG OGs	KOG2607@1\|root,KOG2607@2759\|Eukaryota,37PEQ@33090\|Viridiplantae,3GE8J@35493\|Streptophyta,4JJ6D@91835\|fabids
Description	CDK5RAP3-like
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4050	Gchil4050	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 238303..239922 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4050.t1.start1	Gchil4050.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 238303..238305 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4050.t1.CDS1	Gchil4050.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 238303..239922 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4050.t1.exon1	Gchil4050.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 238303..239922 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4050.t1.stop1	Gchil4050.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 239920..239922 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4050.t1	Gchil4050.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 238303..239922 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:238303..239922+
coding sequence from alignment at tig00004373_pilon:238303..239922+

mRNA sequence

>Gchil4050.t1 ID=Gchil4050.t1|Name=Gchil4050.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=540bp
MSPPPPPSHHHLQQPLPIDIHYNKFLHWLIDRRTIPPKWAAHLAAARTLT
RTALAATPDHLRHALQIPQLTAHQNLPYFTVRAYLQTLVSHHLPPHNDVL
GRYKSPVLRAWADAAAAFEKRHVYLADAAQLLTHNTNNEATAIKATIARL
NQTLADFARREAQLIRSAADADQRYQNTLHHYNLQPDERYDFHSQLHNHL
HEQLPLALQRAVHQTRSPHFQACVKYYHAFATYVSELNHSDVCTALDIVM
NADIDALTAPPKSAPPAHAVEYDPMPSVEHNLDPSDSAEAPIDWGIEIGE
SGSASHPLELPDTTDSAQSAAVTTDGKPDSPPQGEIDWSAVMGELNNSLD
QSTQPVEATPLQCVTLLDAVFREQYFNDLTELQAFLAQRQREVKQLSNSE
VALALQQSNSAPIEIKSVDIDSLVQMCATVDEAIHAINGADTRKLLAMQS
STKLLERTAKSVLEKKHVAQRTRAAIDVLRKQRAAAVVQLTEETAKMENV
AEETRRIIKETEDALSQLYDGRVVNIVGEINVVFPCKSA*

spliced messenger RNA

>Gchil4050.t1 ID=Gchil4050.t1|Name=Gchil4050.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1620bp|location=Sequence derived from alignment at tig00004373_pilon:238303..239922+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTcaccgccaccgcccccgtcgcaccaccacctccagcaaccactgcc
TATCGACATCCACTACAACAAGTTTCTGCATTGGCTCATCGATCGCCGCA
CCATCCCGCCCAAATGGGCCGCCCACCTGGCCGCCGCCCGAACCCTCACG
CGCACCGCCCTGGCCGCCACCCCCGACCACCTCCGCCACGCGCTGCAAAT
CCCGCAACTCACCGCCCATCAAAACCTCCCGTATTTCACCGTCCGCGCCT
ACTTGCAGACCCTAGTATCGCATCACCTACCCCCTCACAACGATGTGCTC
GGTCGCTACAAGTCACCCGTGCTGCGCGCCTGGGCCGACGCCGCCGCCGC
CTTCGAGAAGCGCCATGTGTACCTTGCCGACGCCGCTCAGCTTCTCACCC
ATAACACCAACAACGAGGCCACTGCCATCAAGGCCACTATTGCCCGTCTC
AACCAAACTCTCGCCGACTTTGCGCGTCGCGAAGCTCAGCTCATTCGCTC
CGCCGCCGACGCCGACCAGCGCTATCAGAACACCTTGCATCACTACAATT
TGCAGCCCGACGAACGGTACGACTTTCACTCCCAGCTGCACAACCATTTG
CACGAGCAGCTGCCACTCGCCCTGCAGCGCGCCGTCCACCAAACTCGCTC
ACCACACTTTCAAGCGTGTGTCAAGTATTATCACGCCTTTGCCACATACG
TATCCGAGCTCAACCATTCCGATGTGTGCACCGCTCTCGACATCGTAATG
AACGCTGACATAGACGCTTTGACAGCGCCGCCCAAATCCGCACCACCCGC
GCACGCCGTCGAGTATGACCCTATGCCCTCTGTGGAACACAATCTCGACC
CTTCCGACTCTGCAGAGGCGCCCATTGATTGGGGCATCGAGATTGGCGAA
AGTGGCAGTGCATCGCACCCGCTTGAGCTACCCGACACAACTGATTCCGC
TCAGTCCGCCGCTGTCACAACAGACGGCAAGCCCGACTCACCACCACAAG
GCGAAATCGATTGGAGCGCCGTGATGGGCGAGTTGAACAACTCACTCGAC
CAAAGCACCCAACCGGTCGAAGCGACGCCGCTCCAATGCGTCACACTTTT
GGATGCCGTTTTCCGCGAGCAATACTTTAATGACTTGACGGAACTGCAGG
CCTTTCTCGCTCAGCGCCAGAGAGAGGTGAAACAACTGTCCAATTCGGAG
GTGGCGCTTGCATTGCAGCAATCAAACTCCGCGCCCATCGAGATCAAGAG
CGTGGATATCGACTCGCTTGTCCAAATGTGTGCCACCGTTGACGAGGCGA
TTCACGCCATAAACGGCGCTGACACCAGAAAACTTCTTGCCATGCAGAGC
AGTACAAAGTTGTTGGAACGCACAGCAAAGTCGGTGCTGGAGAAGAAGCA
TGTCGCTCAACGCACCAGAGCCGCAATAGACGTGTTGAGAAAACAACGCG
CCGCTGCGGTTGTACAACTCACGGAGGAGACGGCTAAGATGGAGAACGTT
GCCGAGGAGACGAGGAGAATAATAAAGGAGACTGAGGATGCGCTGTCCCA
GTTGTACGATGGTCGCGTGGTGAACATTGTGGGGGAGATTAATGTAGTCT
TTCCATGCAAGAGTGCCTAG

protein sequence of Gchil4050.t1

>Gchil4050.t1 ID=Gchil4050.t1|Name=Gchil4050.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=540bp
MSPPPPPSHHHLQQPLPIDIHYNKFLHWLIDRRTIPPKWAAHLAAARTLT
RTALAATPDHLRHALQIPQLTAHQNLPYFTVRAYLQTLVSHHLPPHNDVL
GRYKSPVLRAWADAAAAFEKRHVYLADAAQLLTHNTNNEATAIKATIARL
NQTLADFARREAQLIRSAADADQRYQNTLHHYNLQPDERYDFHSQLHNHL
HEQLPLALQRAVHQTRSPHFQACVKYYHAFATYVSELNHSDVCTALDIVM
NADIDALTAPPKSAPPAHAVEYDPMPSVEHNLDPSDSAEAPIDWGIEIGE
SGSASHPLELPDTTDSAQSAAVTTDGKPDSPPQGEIDWSAVMGELNNSLD
QSTQPVEATPLQCVTLLDAVFREQYFNDLTELQAFLAQRQREVKQLSNSE
VALALQQSNSAPIEIKSVDIDSLVQMCATVDEAIHAINGADTRKLLAMQS
STKLLERTAKSVLEKKHVAQRTRAAIDVLRKQRAAAVVQLTEETAKMENV
AEETRRIIKETEDALSQLYDGRVVNIVGEINVVFPCKSA*

mRNA from alignment at tig00004373_pilon:238303..239922+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4050.t1 ID=Gchil4050.t1|Name=Gchil4050.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1620bp|location=Sequence derived from alignment at tig00004373_pilon:238303..239922+ (Gracilaria chilensis NLEC103_M9 male)
ATGTcaccgccaccgcccccgtcgcaccaccacctccagcaaccactgcc
TATCGACATCCACTACAACAAGTTTCTGCATTGGCTCATCGATCGCCGCA
CCATCCCGCCCAAATGGGCCGCCCACCTGGCCGCCGCCCGAACCCTCACG
CGCACCGCCCTGGCCGCCACCCCCGACCACCTCCGCCACGCGCTGCAAAT
CCCGCAACTCACCGCCCATCAAAACCTCCCGTATTTCACCGTCCGCGCCT
ACTTGCAGACCCTAGTATCGCATCACCTACCCCCTCACAACGATGTGCTC
GGTCGCTACAAGTCACCCGTGCTGCGCGCCTGGGCCGACGCCGCCGCCGC
CTTCGAGAAGCGCCATGTGTACCTTGCCGACGCCGCTCAGCTTCTCACCC
ATAACACCAACAACGAGGCCACTGCCATCAAGGCCACTATTGCCCGTCTC
AACCAAACTCTCGCCGACTTTGCGCGTCGCGAAGCTCAGCTCATTCGCTC
CGCCGCCGACGCCGACCAGCGCTATCAGAACACCTTGCATCACTACAATT
TGCAGCCCGACGAACGGTACGACTTTCACTCCCAGCTGCACAACCATTTG
CACGAGCAGCTGCCACTCGCCCTGCAGCGCGCCGTCCACCAAACTCGCTC
ACCACACTTTCAAGCGTGTGTCAAGTATTATCACGCCTTTGCCACATACG
TATCCGAGCTCAACCATTCCGATGTGTGCACCGCTCTCGACATCGTAATG
AACGCTGACATAGACGCTTTGACAGCGCCGCCCAAATCCGCACCACCCGC
GCACGCCGTCGAGTATGACCCTATGCCCTCTGTGGAACACAATCTCGACC
CTTCCGACTCTGCAGAGGCGCCCATTGATTGGGGCATCGAGATTGGCGAA
AGTGGCAGTGCATCGCACCCGCTTGAGCTACCCGACACAACTGATTCCGC
TCAGTCCGCCGCTGTCACAACAGACGGCAAGCCCGACTCACCACCACAAG
GCGAAATCGATTGGAGCGCCGTGATGGGCGAGTTGAACAACTCACTCGAC
CAAAGCACCCAACCGGTCGAAGCGACGCCGCTCCAATGCGTCACACTTTT
GGATGCCGTTTTCCGCGAGCAATACTTTAATGACTTGACGGAACTGCAGG
CCTTTCTCGCTCAGCGCCAGAGAGAGGTGAAACAACTGTCCAATTCGGAG
GTGGCGCTTGCATTGCAGCAATCAAACTCCGCGCCCATCGAGATCAAGAG
CGTGGATATCGACTCGCTTGTCCAAATGTGTGCCACCGTTGACGAGGCGA
TTCACGCCATAAACGGCGCTGACACCAGAAAACTTCTTGCCATGCAGAGC
AGTACAAAGTTGTTGGAACGCACAGCAAAGTCGGTGCTGGAGAAGAAGCA
TGTCGCTCAACGCACCAGAGCCGCAATAGACGTGTTGAGAAAACAACGCG
CCGCTGCGGTTGTACAACTCACGGAGGAGACGGCTAAGATGGAGAACGTT
GCCGAGGAGACGAGGAGAATAATAAAGGAGACTGAGGATGCGCTGTCCCA
GTTGTACGATGGTCGCGTGGTGAACATTGTGGGGGAGATTAATGTAGTCT
TTCCATGCAAGAGTGCCTAG

Coding sequence (CDS) from alignment at tig00004373_pilon:238303..239922+

>Gchil4050.t1 ID=Gchil4050.t1|Name=Gchil4050.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1620bp|location=Sequence derived from alignment at tig00004373_pilon:238303..239922+ (Gracilaria chilensis NLEC103_M9 male)
ATGTcaccgccaccgcccccgtcgcaccaccacctccagcaaccactgcc
TATCGACATCCACTACAACAAGTTTCTGCATTGGCTCATCGATCGCCGCA
CCATCCCGCCCAAATGGGCCGCCCACCTGGCCGCCGCCCGAACCCTCACG
CGCACCGCCCTGGCCGCCACCCCCGACCACCTCCGCCACGCGCTGCAAAT
CCCGCAACTCACCGCCCATCAAAACCTCCCGTATTTCACCGTCCGCGCCT
ACTTGCAGACCCTAGTATCGCATCACCTACCCCCTCACAACGATGTGCTC
GGTCGCTACAAGTCACCCGTGCTGCGCGCCTGGGCCGACGCCGCCGCCGC
CTTCGAGAAGCGCCATGTGTACCTTGCCGACGCCGCTCAGCTTCTCACCC
ATAACACCAACAACGAGGCCACTGCCATCAAGGCCACTATTGCCCGTCTC
AACCAAACTCTCGCCGACTTTGCGCGTCGCGAAGCTCAGCTCATTCGCTC
CGCCGCCGACGCCGACCAGCGCTATCAGAACACCTTGCATCACTACAATT
TGCAGCCCGACGAACGGTACGACTTTCACTCCCAGCTGCACAACCATTTG
CACGAGCAGCTGCCACTCGCCCTGCAGCGCGCCGTCCACCAAACTCGCTC
ACCACACTTTCAAGCGTGTGTCAAGTATTATCACGCCTTTGCCACATACG
TATCCGAGCTCAACCATTCCGATGTGTGCACCGCTCTCGACATCGTAATG
AACGCTGACATAGACGCTTTGACAGCGCCGCCCAAATCCGCACCACCCGC
GCACGCCGTCGAGTATGACCCTATGCCCTCTGTGGAACACAATCTCGACC
CTTCCGACTCTGCAGAGGCGCCCATTGATTGGGGCATCGAGATTGGCGAA
AGTGGCAGTGCATCGCACCCGCTTGAGCTACCCGACACAACTGATTCCGC
TCAGTCCGCCGCTGTCACAACAGACGGCAAGCCCGACTCACCACCACAAG
GCGAAATCGATTGGAGCGCCGTGATGGGCGAGTTGAACAACTCACTCGAC
CAAAGCACCCAACCGGTCGAAGCGACGCCGCTCCAATGCGTCACACTTTT
GGATGCCGTTTTCCGCGAGCAATACTTTAATGACTTGACGGAACTGCAGG
CCTTTCTCGCTCAGCGCCAGAGAGAGGTGAAACAACTGTCCAATTCGGAG
GTGGCGCTTGCATTGCAGCAATCAAACTCCGCGCCCATCGAGATCAAGAG
CGTGGATATCGACTCGCTTGTCCAAATGTGTGCCACCGTTGACGAGGCGA
TTCACGCCATAAACGGCGCTGACACCAGAAAACTTCTTGCCATGCAGAGC
AGTACAAAGTTGTTGGAACGCACAGCAAAGTCGGTGCTGGAGAAGAAGCA
TGTCGCTCAACGCACCAGAGCCGCAATAGACGTGTTGAGAAAACAACGCG
CCGCTGCGGTTGTACAACTCACGGAGGAGACGGCTAAGATGGAGAACGTT
GCCGAGGAGACGAGGAGAATAATAAAGGAGACTGAGGATGCGCTGTCCCA
GTTGTACGATGGTCGCGTGGTGAACATTGTGGGGGAGATTAATGTAGTCT
TTCCATGCAAGAGTGCCTAG