Gchil4049.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4049.t1
Unique NameGchil4049.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length180
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:231433..231972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1260251.SPISAL_05015
Preferred namequeF
PFAMsQueF,QueF_N
Max annot lvl1236|Gammaproteobacteria
KEGG rclassRC01875
KEGG koko:K06879,ko:K09457
KEGG ReactionR07605
KEGG Pathwayko00790,ko01100,map00790,map01100
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0016651,GO:0016657,GO:0018130,GO:0019438,GO:0033739,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046116,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
Evalue2.74e-71
EggNOG OGsCOG0780@1|root,COG0780@2|Bacteria,1MW0M@1224|Proteobacteria,1RNXM@1236|Gammaproteobacteria
EC1.7.1.13
DescriptionCatalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
COG categoryK
BiGG ReactioniSFV_1184.SFV_2663,iSF_1195.SF2807,iS_1188.S3002
BRITEko00000,ko00001,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4049Gchil4049Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 231433..231972 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4049.t1.start1Gchil4049.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 231433..231435 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4049.t1.CDS1Gchil4049.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 231433..231972 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4049.t1.exon1Gchil4049.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 231433..231972 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4049.t1.stop1Gchil4049.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 231970..231972 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4049.t1Gchil4049.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 231433..231972 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4049.t1 ID=Gchil4049.t1|Name=Gchil4049.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=180bp
MPAPPPSFTRALAVSRHAASVRRAFSTRHKHAQLTQLGHASPIPTEPRHD
TLERVRNQHADVSYVARFTCPEFTSLCPVTAQPDFAHVIIDYVPRAWLLE
SKSLKLYLASFRNHRDFHEACTVGIARAIERCIDPHWLRIGAYWYPRGGI
PIDVFYASGDPPAAVWIPPQQCPPYRGRG*
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spliced messenger RNA

>Gchil4049.t1 ID=Gchil4049.t1|Name=Gchil4049.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=540bp|location=Sequence derived from alignment at tig00004373_pilon:231433..231972+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atgcccgcgccgccgccgtcgttcacGCGCGCGCTTGCCGTGTCGCGCCA
CGCCGCAAGTGTCCGTCGCGCATTCAGCACGCGCCACAAGCATGCGCAGC
TCACACAGCTGGGCCACGCGTCGCCCATTCCCACCGAGCCGCGCCACGAC
ACGCTGGAGCGCGTGCGTAACCAACACGCCGATGTGAGTTATGTCGCGCG
CTTCACCTGTCCGGAGTTCACGTCGCTGTGCCCGGTGACGGCGCAACCGG
ACTTTGCACATGTTATCATCGACTACGTGCCGCGCGCGTGGCTGCTCGAG
TCCAAGTCGCTCAAGCTGTATTTGGCTAGCTTCCGCAACCACCGCGACTT
TCATGAGGCGTGTACTGTGGGCATTGCGCGCGCCATCGAGCGCTGCATCG
ACCCGCATTGGCTGCGCATCGGTGCCTATTGGTACCCGCGCGGCGGCATC
CCCATCGACGTCTTCTACGCCTCCGGTGACCCGCCCGCTGCCGTGTGGAT
CCCACCTCAGCAATGTCCGCCGTACCGCGGCCGCGGCTGA
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protein sequence of Gchil4049.t1

>Gchil4049.t1 ID=Gchil4049.t1|Name=Gchil4049.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=180bp
MPAPPPSFTRALAVSRHAASVRRAFSTRHKHAQLTQLGHASPIPTEPRHD
TLERVRNQHADVSYVARFTCPEFTSLCPVTAQPDFAHVIIDYVPRAWLLE
SKSLKLYLASFRNHRDFHEACTVGIARAIERCIDPHWLRIGAYWYPRGGI
PIDVFYASGDPPAAVWIPPQQCPPYRGRG*
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mRNA from alignment at tig00004373_pilon:231433..231972+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4049.t1 ID=Gchil4049.t1|Name=Gchil4049.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=540bp|location=Sequence derived from alignment at tig00004373_pilon:231433..231972+ (Gracilaria chilensis NLEC103_M9 male)
atgcccgcgccgccgccgtcgttcacGCGCGCGCTTGCCGTGTCGCGCCA
CGCCGCAAGTGTCCGTCGCGCATTCAGCACGCGCCACAAGCATGCGCAGC
TCACACAGCTGGGCCACGCGTCGCCCATTCCCACCGAGCCGCGCCACGAC
ACGCTGGAGCGCGTGCGTAACCAACACGCCGATGTGAGTTATGTCGCGCG
CTTCACCTGTCCGGAGTTCACGTCGCTGTGCCCGGTGACGGCGCAACCGG
ACTTTGCACATGTTATCATCGACTACGTGCCGCGCGCGTGGCTGCTCGAG
TCCAAGTCGCTCAAGCTGTATTTGGCTAGCTTCCGCAACCACCGCGACTT
TCATGAGGCGTGTACTGTGGGCATTGCGCGCGCCATCGAGCGCTGCATCG
ACCCGCATTGGCTGCGCATCGGTGCCTATTGGTACCCGCGCGGCGGCATC
CCCATCGACGTCTTCTACGCCTCCGGTGACCCGCCCGCTGCCGTGTGGAT
CCCACCTCAGCAATGTCCGCCGTACCGCGGCCGCGGCTGA
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Coding sequence (CDS) from alignment at tig00004373_pilon:231433..231972+

>Gchil4049.t1 ID=Gchil4049.t1|Name=Gchil4049.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=540bp|location=Sequence derived from alignment at tig00004373_pilon:231433..231972+ (Gracilaria chilensis NLEC103_M9 male)
atgcccgcgccgccgccgtcgttcacGCGCGCGCTTGCCGTGTCGCGCCA
CGCCGCAAGTGTCCGTCGCGCATTCAGCACGCGCCACAAGCATGCGCAGC
TCACACAGCTGGGCCACGCGTCGCCCATTCCCACCGAGCCGCGCCACGAC
ACGCTGGAGCGCGTGCGTAACCAACACGCCGATGTGAGTTATGTCGCGCG
CTTCACCTGTCCGGAGTTCACGTCGCTGTGCCCGGTGACGGCGCAACCGG
ACTTTGCACATGTTATCATCGACTACGTGCCGCGCGCGTGGCTGCTCGAG
TCCAAGTCGCTCAAGCTGTATTTGGCTAGCTTCCGCAACCACCGCGACTT
TCATGAGGCGTGTACTGTGGGCATTGCGCGCGCCATCGAGCGCTGCATCG
ACCCGCATTGGCTGCGCATCGGTGCCTATTGGTACCCGCGCGGCGGCATC
CCCATCGACGTCTTCTACGCCTCCGGTGACCCGCCCGCTGCCGTGTGGAT
CCCACCTCAGCAATGTCCGCCGTACCGCGGCCGCGGCTGA
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