Gchil4042.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4042.t1
Unique NameGchil4042.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length486
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:216824..218281 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4922.CAY68327
Preferred nameALG10
PFAMsDIE2_ALG10
Max annot lvl4751|Fungi
KEGG koko:K03850
KEGG ReactionR06264
KEGG Pathwayko00510,ko01100,map00510,map01100
KEGG ModuleM00055
GOsGO:0003674,GO:0003824,GO:0004583,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006490,GO:0006629,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0031224,GO:0031984,GO:0034645,GO:0036211,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046527,GO:0070085,GO:0071704,GO:0071944,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Evalue8.93e-43
EggNOG OGsKOG2642@1|root,KOG2642@2759|Eukaryota,39INY@33154|Opisthokonta,3NXZQ@4751|Fungi,3QQ6M@4890|Ascomycota,3RR47@4891|Saccharomycetes
EC2.4.1.256
DescriptionAdds the third glucose residue to the lipid-linked oligosaccharide precursor for N-linked glycosylation. Transfers glucose from dolichyl phosphate glucose (Dol-P-Glc) onto the lipid-linked oligosaccharide Glc(2)Man(9)GlcNAc(2)-PP-Dol
COG categoryIKOT
CAZyGT59
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4042Gchil4042Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 216824..218281 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4042.t1.stop1Gchil4042.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 216824..216826 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4042.t1.CDS1Gchil4042.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 216824..218281 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4042.t1.exon1Gchil4042.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 216824..218281 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4042.t1.start1Gchil4042.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 218279..218281 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4042.t1Gchil4042.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 216824..218281 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4042.t1 ID=Gchil4042.t1|Name=Gchil4042.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=486bp
MLTVSIILLMAAFLLTALNTWVNLRQPEPYMDELFHIPQAQEFCNALASK
RLPLYDPSITTPPALYIPNAILAALSGNKVVCDTRWLRVTSATMSFFSLL
LMVNILQITTRIRRGHYGSITAGNALVDDEVVWLLSFIIWLHPVNLFYSN
LFYTDTTSLFWVLLFWRINLRNSSLFSAPFGVLGSLSRQTNMVWHAYLSL
DTYVNSNIPQSDSDIPLFVLNFIRGNRFHVLAGIGYIAFVVLNKGIVLGD
KSHHEMTMHHAMFAYFAAFQGSFFTLIQLSMPWEALKMVYTVFSSGRLTT
FLLSVCVALTAMVLATGDAVHPFILADNRHFTFYIYRRWLLRSIWRRLAL
VPIYGWCLTNSFFEPIIVLSIERQGSIHSLNESHCDQWTSKAEFFSDVAL
LACAYITLVPSSLLEPRYFVVGSTLFWLRRAARLGSSPNKIFLVLVSVGM
LFLNVAFVYIFAELPFPRAIDLHMPNDTSPGRFMF*
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spliced messenger RNA

>Gchil4042.t1 ID=Gchil4042.t1|Name=Gchil4042.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1458bp|location=Sequence derived from alignment at tig00004373_pilon:216824..218281- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGACCGTTTCGATCATCCTTTTAATGGCTGCTTTCCTTTTGACGGC
ATTGAATACATGGGTCAATCTTCGACAACCTGAACCATATATGGATGAGC
TATTTCATATACCTCAGGCTCAAGAGTTCTGCAATGCACTCGCGTCCAAG
AGACTTCCACTTTATGACCCTTCGATTACGACACCGCCGGCCCTCTACAT
TCCAAACGCTATCCTTGCAGCCTTATCGGGGAACAAGGTTGTATGTGACA
CTCGTTGGCTTCGAGTTACTTCTGCCACGATGTCCTTCTTCTCTTTGTTA
CTCATGGTCAATATTCTTCAGATAACAACTAGAATCCGACGAGGCCATTA
TGGATCTATCACCGCAGGAAATGCCCTCGTTGATGACGAGGTAGTCTGGC
TACTGTCGTTCATCATTTGGCTTCATCCGGTAAATTTATTTTACTCCAAC
TTGTTCTACACCGATACTACTTCTCTATTTTGGGTACTGCTTTTCTGGAG
GATAAATCTTAGGAACAGCTCCTTATTTTCTGCGCCATTCGGAGTTCTAG
GAAGCTTGTCGAGACAGACAAACATGGTTTGGCATGCATACTTGTCACTT
GATACCTACGTCAACTCGAACATCCCGCAGAGCGATTCTGATATTCCTTT
GTTTGTACTGAATTTCATTCGGGGAAATCGCTTTCACGTACTTGCTGGAA
TAGGATACATTGCGTTCGTGGTGTTAAACAAAGGAATCGTGCTGGGAGAC
AAATCTCATCACGAAATGACCATGCATCACGCTATGTTTGCTTACTTTGC
CGCTTTTCAAGGAAGCTTCTTTACTTTAATTCAGCTCTCCATGCCTTGGG
AAGCTCTGAAAATGGTATACACAGTCTTTTCGTCCGGTAGGTTGACGACG
TTTCTCTTAAGTGTTTGTGTTGCTTTGACCGCTATGGTTCTCGCTACAGG
AGATGCGGTGCACCCGTTTATTCTGGCAGACAATCGTCACTTCACCTTCT
ACATCTACCGTCGCTGGTTGCTGCGTTCCATTTGGCGAAGACTAGCTCTT
GTCCCGATATACGGGTGGTGCTTGACCAACTCTTTCTTTGAACCAATAAT
TGTGCTCAGTATTGAACGCCAAGGAAGTATACACTCTTTGAACGAATCAC
ATTGTGACCAATGGACGTCGAAAGCAGAATTTTTTTCAGATGTGGCTTTG
CTAGCTTGTGCCTACATCACTCTTGTACCATCATCTCTCCTTGAGCCAAG
GTATTTTGTTGTCGGTAGCACCTTGTTTTGGTTGAGGCGTGCGGCCAGGT
TAGGATCGTCACCAAACAAGATTTTTTTGGTGCTTGTTTCTGTGGGTATG
TTGTTCTTGAACGTAGCGTTTGTGTACATATTTGCGGAGCTTCCATTTCC
GAGAGCAATTGACCTGCATATGCCGAATGATACTTCTCCCGGTCGTTTTA
TGTTCTAA
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protein sequence of Gchil4042.t1

>Gchil4042.t1 ID=Gchil4042.t1|Name=Gchil4042.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=486bp
MLTVSIILLMAAFLLTALNTWVNLRQPEPYMDELFHIPQAQEFCNALASK
RLPLYDPSITTPPALYIPNAILAALSGNKVVCDTRWLRVTSATMSFFSLL
LMVNILQITTRIRRGHYGSITAGNALVDDEVVWLLSFIIWLHPVNLFYSN
LFYTDTTSLFWVLLFWRINLRNSSLFSAPFGVLGSLSRQTNMVWHAYLSL
DTYVNSNIPQSDSDIPLFVLNFIRGNRFHVLAGIGYIAFVVLNKGIVLGD
KSHHEMTMHHAMFAYFAAFQGSFFTLIQLSMPWEALKMVYTVFSSGRLTT
FLLSVCVALTAMVLATGDAVHPFILADNRHFTFYIYRRWLLRSIWRRLAL
VPIYGWCLTNSFFEPIIVLSIERQGSIHSLNESHCDQWTSKAEFFSDVAL
LACAYITLVPSSLLEPRYFVVGSTLFWLRRAARLGSSPNKIFLVLVSVGM
LFLNVAFVYIFAELPFPRAIDLHMPNDTSPGRFMF*
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mRNA from alignment at tig00004373_pilon:216824..218281-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4042.t1 ID=Gchil4042.t1|Name=Gchil4042.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1458bp|location=Sequence derived from alignment at tig00004373_pilon:216824..218281- (Gracilaria chilensis NLEC103_M9 male)
ATGTTGACCGTTTCGATCATCCTTTTAATGGCTGCTTTCCTTTTGACGGC
ATTGAATACATGGGTCAATCTTCGACAACCTGAACCATATATGGATGAGC
TATTTCATATACCTCAGGCTCAAGAGTTCTGCAATGCACTCGCGTCCAAG
AGACTTCCACTTTATGACCCTTCGATTACGACACCGCCGGCCCTCTACAT
TCCAAACGCTATCCTTGCAGCCTTATCGGGGAACAAGGTTGTATGTGACA
CTCGTTGGCTTCGAGTTACTTCTGCCACGATGTCCTTCTTCTCTTTGTTA
CTCATGGTCAATATTCTTCAGATAACAACTAGAATCCGACGAGGCCATTA
TGGATCTATCACCGCAGGAAATGCCCTCGTTGATGACGAGGTAGTCTGGC
TACTGTCGTTCATCATTTGGCTTCATCCGGTAAATTTATTTTACTCCAAC
TTGTTCTACACCGATACTACTTCTCTATTTTGGGTACTGCTTTTCTGGAG
GATAAATCTTAGGAACAGCTCCTTATTTTCTGCGCCATTCGGAGTTCTAG
GAAGCTTGTCGAGACAGACAAACATGGTTTGGCATGCATACTTGTCACTT
GATACCTACGTCAACTCGAACATCCCGCAGAGCGATTCTGATATTCCTTT
GTTTGTACTGAATTTCATTCGGGGAAATCGCTTTCACGTACTTGCTGGAA
TAGGATACATTGCGTTCGTGGTGTTAAACAAAGGAATCGTGCTGGGAGAC
AAATCTCATCACGAAATGACCATGCATCACGCTATGTTTGCTTACTTTGC
CGCTTTTCAAGGAAGCTTCTTTACTTTAATTCAGCTCTCCATGCCTTGGG
AAGCTCTGAAAATGGTATACACAGTCTTTTCGTCCGGTAGGTTGACGACG
TTTCTCTTAAGTGTTTGTGTTGCTTTGACCGCTATGGTTCTCGCTACAGG
AGATGCGGTGCACCCGTTTATTCTGGCAGACAATCGTCACTTCACCTTCT
ACATCTACCGTCGCTGGTTGCTGCGTTCCATTTGGCGAAGACTAGCTCTT
GTCCCGATATACGGGTGGTGCTTGACCAACTCTTTCTTTGAACCAATAAT
TGTGCTCAGTATTGAACGCCAAGGAAGTATACACTCTTTGAACGAATCAC
ATTGTGACCAATGGACGTCGAAAGCAGAATTTTTTTCAGATGTGGCTTTG
CTAGCTTGTGCCTACATCACTCTTGTACCATCATCTCTCCTTGAGCCAAG
GTATTTTGTTGTCGGTAGCACCTTGTTTTGGTTGAGGCGTGCGGCCAGGT
TAGGATCGTCACCAAACAAGATTTTTTTGGTGCTTGTTTCTGTGGGTATG
TTGTTCTTGAACGTAGCGTTTGTGTACATATTTGCGGAGCTTCCATTTCC
GAGAGCAATTGACCTGCATATGCCGAATGATACTTCTCCCGGTCGTTTTA
TGTTCTAA
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Coding sequence (CDS) from alignment at tig00004373_pilon:216824..218281-

>Gchil4042.t1 ID=Gchil4042.t1|Name=Gchil4042.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1458bp|location=Sequence derived from alignment at tig00004373_pilon:216824..218281- (Gracilaria chilensis NLEC103_M9 male)
ATGTTGACCGTTTCGATCATCCTTTTAATGGCTGCTTTCCTTTTGACGGC
ATTGAATACATGGGTCAATCTTCGACAACCTGAACCATATATGGATGAGC
TATTTCATATACCTCAGGCTCAAGAGTTCTGCAATGCACTCGCGTCCAAG
AGACTTCCACTTTATGACCCTTCGATTACGACACCGCCGGCCCTCTACAT
TCCAAACGCTATCCTTGCAGCCTTATCGGGGAACAAGGTTGTATGTGACA
CTCGTTGGCTTCGAGTTACTTCTGCCACGATGTCCTTCTTCTCTTTGTTA
CTCATGGTCAATATTCTTCAGATAACAACTAGAATCCGACGAGGCCATTA
TGGATCTATCACCGCAGGAAATGCCCTCGTTGATGACGAGGTAGTCTGGC
TACTGTCGTTCATCATTTGGCTTCATCCGGTAAATTTATTTTACTCCAAC
TTGTTCTACACCGATACTACTTCTCTATTTTGGGTACTGCTTTTCTGGAG
GATAAATCTTAGGAACAGCTCCTTATTTTCTGCGCCATTCGGAGTTCTAG
GAAGCTTGTCGAGACAGACAAACATGGTTTGGCATGCATACTTGTCACTT
GATACCTACGTCAACTCGAACATCCCGCAGAGCGATTCTGATATTCCTTT
GTTTGTACTGAATTTCATTCGGGGAAATCGCTTTCACGTACTTGCTGGAA
TAGGATACATTGCGTTCGTGGTGTTAAACAAAGGAATCGTGCTGGGAGAC
AAATCTCATCACGAAATGACCATGCATCACGCTATGTTTGCTTACTTTGC
CGCTTTTCAAGGAAGCTTCTTTACTTTAATTCAGCTCTCCATGCCTTGGG
AAGCTCTGAAAATGGTATACACAGTCTTTTCGTCCGGTAGGTTGACGACG
TTTCTCTTAAGTGTTTGTGTTGCTTTGACCGCTATGGTTCTCGCTACAGG
AGATGCGGTGCACCCGTTTATTCTGGCAGACAATCGTCACTTCACCTTCT
ACATCTACCGTCGCTGGTTGCTGCGTTCCATTTGGCGAAGACTAGCTCTT
GTCCCGATATACGGGTGGTGCTTGACCAACTCTTTCTTTGAACCAATAAT
TGTGCTCAGTATTGAACGCCAAGGAAGTATACACTCTTTGAACGAATCAC
ATTGTGACCAATGGACGTCGAAAGCAGAATTTTTTTCAGATGTGGCTTTG
CTAGCTTGTGCCTACATCACTCTTGTACCATCATCTCTCCTTGAGCCAAG
GTATTTTGTTGTCGGTAGCACCTTGTTTTGGTTGAGGCGTGCGGCCAGGT
TAGGATCGTCACCAAACAAGATTTTTTTGGTGCTTGTTTCTGTGGGTATG
TTGTTCTTGAACGTAGCGTTTGTGTACATATTTGCGGAGCTTCCATTTCC
GAGAGCAATTGACCTGCATATGCCGAATGATACTTCTCCCGGTCGTTTTA
TGTTCTAA
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