Gchil4040.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4040.t1
Unique NameGchil4040.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length402
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:210556..211761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705248.1
Preferred nameGS1
PFAMsGln-synt_C,Gln-synt_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00010,RC02798
KEGG koko:K01915
KEGG ReactionR00253
KEGG Pathwayko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727
GOsGO:0003674,GO:0003735,GO:0003824,GO:0004356,GO:0005198,GO:0005488,GO:0005507,GO:0005515,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006082,GO:0006520,GO:0006536,GO:0006541,GO:0006807,GO:0006950,GO:0006970,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0009064,GO:0009506,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010150,GO:0016020,GO:0016211,GO:0016874,GO:0016879,GO:0016880,GO:0019676,GO:0019740,GO:0019752,GO:0022626,GO:0030054,GO:0030312,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0034357,GO:0042126,GO:0042128,GO:0042221,GO:0042651,GO:0042788,GO:0042802,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046686,GO:0046872,GO:0046914,GO:0048046,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0050896,GO:0055035,GO:0055044,GO:0071704,GO:0071941,GO:0071944,GO:0090693,GO:0099402,GO:1901564,GO:1901605,GO:1990904,GO:2001057
Evalue2.19e-171
EggNOG OGsCOG0174@1|root,KOG0683@2759|Eukaryota
EC6.3.1.2
Descriptionglutamine biosynthetic process
COG categoryE
BRITEko00000,ko00001,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4040Gchil4040Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 210556..211761 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4040.t1.stop1Gchil4040.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 210556..210558 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4040.t1.CDS1Gchil4040.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 210556..211761 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4040.t1.exon1Gchil4040.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 210556..211761 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4040.t1.start1Gchil4040.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 211759..211761 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4040.t1Gchil4040.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 210556..211761 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4040.t1 ID=Gchil4040.t1|Name=Gchil4040.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=402bp
MVFKSSVAFVPGGIAAAVRANSLSSSRCSQRAVVPVAKSRFSMNAAFGTN
TELGGLLSLPLPSSVVMAEYVWLDGFFKLRSKSRTVDAGISDPAQLPEWN
YDGSSTGQAPGDDSEVILKPCAIYKDPFRGGDHILVMCDTYTPGGNPLPT
NTRAGCDFVMDKARDTVPWFGLEQEYFLFDPKTNKPLGFPADGQPAPQGP
YYCGVGTENAFGREIAEAAWRAQLYAGLKVGGINAEVAPGQWEFQVGPCV
GIEEGDMLWMARYILERVAEIAGVIVNFEPKPVKGDWNGSGCHTNFSTKA
MREDGGYEKAILPAMVPMEQMAQEHIKEYGQGNDQRLTGQHETAPIDQFR
WGVADRGASIRIGANIVKDGKGYFEDRRPAANCDPYVVTKMLVKTVCNVA
E*
back to top

spliced messenger RNA

>Gchil4040.t1 ID=Gchil4040.t1|Name=Gchil4040.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1206bp|location=Sequence derived from alignment at tig00004373_pilon:210556..211761- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTTCAAGAGCTCTGTGGCTTTCGTGCCGGGCGGCATTGCCGCTGC
TGTGCGTGCCAATTCTTTGTCGTCCTCGCGATGCTCGCAACGCGCCGTCG
TCCCTGTCGCCAAGTCGCGCTTCAGCATGAATGCCGCCTTCGGCACCAAT
ACTGAGCTGGGGGGCCTGCTATCGCTTCCACTCCCGTCTTCCGTTGTTAT
GGCCGAGTATGTCTGGCTGGATGGTTTCTTCAAGCTCAGATCGAAGAGTC
GCACTGTCGACGCCGGAATATCCGATCCAGCACAGCTTCCAGAGTGGAAT
TATGATGGCTCCTCTACGGGTCAGGCCCCCGGCGATGACTCTGAAGTCAT
TCTGAAACCGTGTGCTATCTATAAAGATCCCTTCCGAGGTGGCGATCACA
TTCTTGTCATGTGCGACACCTACACTCCTGGCGGCAACCCACTTCCGACG
AACACCAGGGCCGGTTGTGACTTTGTCATGGACAAGGCGAGAGACACTGT
CCCATGGTTTGGTTTGGAACAGGAATACTTCTTGTTTGATCCGAAAACTA
ACAAGCCGCTTGGCTTCCCCGCGGACGGCCAGCCCGCCCCTCAAGGTCCG
TATTATTGTGGTGTAGGGACAGAGAATGCATTTGGCAGAGAAATTGCCGA
AGCTGCTTGGCGCGCTCAGTTGTATGCGGGCCTCAAAGTCGGCGGTATTA
ACGCCGAAGTCGCTCCCGGGCAGTGGGAATTCCAGGTTGGGCCTTGCGTG
GGCATTGAAGAGGGTGACATGCTGTGGATGGCTCGCTACATTTTGGAGAG
AGTGGCGGAAATTGCGGGTGTAATAGTAAACTTTGAGCCAAAGCCTGTAA
AGGGCGATTGGAACGGTTCTGGATGCCACACCAACTTTTCAACGAAGGCG
ATGCGCGAAGATGGTGGCTACGAAAAGGCTATTCTACCAGCCATGGTTCC
GATGGAACAAATGGCTCAAGAGCACATCAAAGAGTACGGACAAGGAAATG
ACCAACGTTTAACAGGTCAACATGAGACTGCCCCAATTGACCAATTCCGT
TGGGGCGTGGCTGATCGTGGGGCTTCGATTCGTATTGGTGCAAACATTGT
CAAAGACGGAAAGGGGTACTTCGAGGATCGACGCCCAGCGGCTAACTGCG
ACCCTTATGTCGTGACTAAAATGCTCGTGAAGACCGTGTGTAACGTCGCT
GAATAA
back to top

protein sequence of Gchil4040.t1

>Gchil4040.t1 ID=Gchil4040.t1|Name=Gchil4040.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=402bp
MVFKSSVAFVPGGIAAAVRANSLSSSRCSQRAVVPVAKSRFSMNAAFGTN
TELGGLLSLPLPSSVVMAEYVWLDGFFKLRSKSRTVDAGISDPAQLPEWN
YDGSSTGQAPGDDSEVILKPCAIYKDPFRGGDHILVMCDTYTPGGNPLPT
NTRAGCDFVMDKARDTVPWFGLEQEYFLFDPKTNKPLGFPADGQPAPQGP
YYCGVGTENAFGREIAEAAWRAQLYAGLKVGGINAEVAPGQWEFQVGPCV
GIEEGDMLWMARYILERVAEIAGVIVNFEPKPVKGDWNGSGCHTNFSTKA
MREDGGYEKAILPAMVPMEQMAQEHIKEYGQGNDQRLTGQHETAPIDQFR
WGVADRGASIRIGANIVKDGKGYFEDRRPAANCDPYVVTKMLVKTVCNVA
E*
back to top

mRNA from alignment at tig00004373_pilon:210556..211761-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4040.t1 ID=Gchil4040.t1|Name=Gchil4040.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1206bp|location=Sequence derived from alignment at tig00004373_pilon:210556..211761- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTTTCAAGAGCTCTGTGGCTTTCGTGCCGGGCGGCATTGCCGCTGC
TGTGCGTGCCAATTCTTTGTCGTCCTCGCGATGCTCGCAACGCGCCGTCG
TCCCTGTCGCCAAGTCGCGCTTCAGCATGAATGCCGCCTTCGGCACCAAT
ACTGAGCTGGGGGGCCTGCTATCGCTTCCACTCCCGTCTTCCGTTGTTAT
GGCCGAGTATGTCTGGCTGGATGGTTTCTTCAAGCTCAGATCGAAGAGTC
GCACTGTCGACGCCGGAATATCCGATCCAGCACAGCTTCCAGAGTGGAAT
TATGATGGCTCCTCTACGGGTCAGGCCCCCGGCGATGACTCTGAAGTCAT
TCTGAAACCGTGTGCTATCTATAAAGATCCCTTCCGAGGTGGCGATCACA
TTCTTGTCATGTGCGACACCTACACTCCTGGCGGCAACCCACTTCCGACG
AACACCAGGGCCGGTTGTGACTTTGTCATGGACAAGGCGAGAGACACTGT
CCCATGGTTTGGTTTGGAACAGGAATACTTCTTGTTTGATCCGAAAACTA
ACAAGCCGCTTGGCTTCCCCGCGGACGGCCAGCCCGCCCCTCAAGGTCCG
TATTATTGTGGTGTAGGGACAGAGAATGCATTTGGCAGAGAAATTGCCGA
AGCTGCTTGGCGCGCTCAGTTGTATGCGGGCCTCAAAGTCGGCGGTATTA
ACGCCGAAGTCGCTCCCGGGCAGTGGGAATTCCAGGTTGGGCCTTGCGTG
GGCATTGAAGAGGGTGACATGCTGTGGATGGCTCGCTACATTTTGGAGAG
AGTGGCGGAAATTGCGGGTGTAATAGTAAACTTTGAGCCAAAGCCTGTAA
AGGGCGATTGGAACGGTTCTGGATGCCACACCAACTTTTCAACGAAGGCG
ATGCGCGAAGATGGTGGCTACGAAAAGGCTATTCTACCAGCCATGGTTCC
GATGGAACAAATGGCTCAAGAGCACATCAAAGAGTACGGACAAGGAAATG
ACCAACGTTTAACAGGTCAACATGAGACTGCCCCAATTGACCAATTCCGT
TGGGGCGTGGCTGATCGTGGGGCTTCGATTCGTATTGGTGCAAACATTGT
CAAAGACGGAAAGGGGTACTTCGAGGATCGACGCCCAGCGGCTAACTGCG
ACCCTTATGTCGTGACTAAAATGCTCGTGAAGACCGTGTGTAACGTCGCT
GAATAA
back to top

Coding sequence (CDS) from alignment at tig00004373_pilon:210556..211761-

>Gchil4040.t1 ID=Gchil4040.t1|Name=Gchil4040.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1206bp|location=Sequence derived from alignment at tig00004373_pilon:210556..211761- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTTTCAAGAGCTCTGTGGCTTTCGTGCCGGGCGGCATTGCCGCTGC
TGTGCGTGCCAATTCTTTGTCGTCCTCGCGATGCTCGCAACGCGCCGTCG
TCCCTGTCGCCAAGTCGCGCTTCAGCATGAATGCCGCCTTCGGCACCAAT
ACTGAGCTGGGGGGCCTGCTATCGCTTCCACTCCCGTCTTCCGTTGTTAT
GGCCGAGTATGTCTGGCTGGATGGTTTCTTCAAGCTCAGATCGAAGAGTC
GCACTGTCGACGCCGGAATATCCGATCCAGCACAGCTTCCAGAGTGGAAT
TATGATGGCTCCTCTACGGGTCAGGCCCCCGGCGATGACTCTGAAGTCAT
TCTGAAACCGTGTGCTATCTATAAAGATCCCTTCCGAGGTGGCGATCACA
TTCTTGTCATGTGCGACACCTACACTCCTGGCGGCAACCCACTTCCGACG
AACACCAGGGCCGGTTGTGACTTTGTCATGGACAAGGCGAGAGACACTGT
CCCATGGTTTGGTTTGGAACAGGAATACTTCTTGTTTGATCCGAAAACTA
ACAAGCCGCTTGGCTTCCCCGCGGACGGCCAGCCCGCCCCTCAAGGTCCG
TATTATTGTGGTGTAGGGACAGAGAATGCATTTGGCAGAGAAATTGCCGA
AGCTGCTTGGCGCGCTCAGTTGTATGCGGGCCTCAAAGTCGGCGGTATTA
ACGCCGAAGTCGCTCCCGGGCAGTGGGAATTCCAGGTTGGGCCTTGCGTG
GGCATTGAAGAGGGTGACATGCTGTGGATGGCTCGCTACATTTTGGAGAG
AGTGGCGGAAATTGCGGGTGTAATAGTAAACTTTGAGCCAAAGCCTGTAA
AGGGCGATTGGAACGGTTCTGGATGCCACACCAACTTTTCAACGAAGGCG
ATGCGCGAAGATGGTGGCTACGAAAAGGCTATTCTACCAGCCATGGTTCC
GATGGAACAAATGGCTCAAGAGCACATCAAAGAGTACGGACAAGGAAATG
ACCAACGTTTAACAGGTCAACATGAGACTGCCCCAATTGACCAATTCCGT
TGGGGCGTGGCTGATCGTGGGGCTTCGATTCGTATTGGTGCAAACATTGT
CAAAGACGGAAAGGGGTACTTCGAGGATCGACGCCCAGCGGCTAACTGCG
ACCCTTATGTCGTGACTAAAATGCTCGTGAAGACCGTGTGTAACGTCGCT
GAATAA
back to top