Gchil4033.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4033.t1
Unique NameGchil4033.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length452
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:138935..140290 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4533.OB03G11270.1
PFAMsPCI,RPN7
Max annot lvl35493|Streptophyta
KEGG koko:K12175
GOsGO:0000003,GO:0000338,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006807,GO:0006950,GO:0006970,GO:0006972,GO:0007275,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009628,GO:0009642,GO:0009646,GO:0009651,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0019538,GO:0022414,GO:0032501,GO:0032502,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0061458,GO:0070646,GO:0070647,GO:0071704,GO:1901564
Evalue3.86e-91
EggNOG OGsKOG0686@1|root,KOG0686@2759|Eukaryota,37JPY@33090|Viridiplantae,3GGQE@35493|Streptophyta,3KM7T@4447|Liliopsida,3I5CG@38820|Poales
Description26S proteasome subunit RPN7
COG categoryOT
BRITEko00000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4033Gchil4033Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 138935..140290 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4033.t1.stop1Gchil4033.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 138935..138937 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4033.t1.CDS1Gchil4033.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 138935..140290 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4033.t1.exon1Gchil4033.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 138935..140290 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4033.t1.start1Gchil4033.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 140288..140290 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4033.t1Gchil4033.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 138935..140290 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4033.t1 ID=Gchil4033.t1|Name=Gchil4033.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=452bp
MQDEALTFDIDVYAARYRGRGKIHRMQFIAKKCPPLRSEALRIAIIEAKK
GRDTLQYKDLIKEADGLIGDEFELDSIWVEENNRWAAREIEKLHRALDDN
NQPQNKEVLRNIHSDLGDFFHMRGKLQHARGDHIKTRDYCTRAEHSIYMC
YKVIQVSIEDSDFGHVENHFLMAENTPDSDKTSPEMCNMRACAGLANMVR
GQYEQAVKRFVETNTDPSEASISELSKKFGDMIALEDVAVYGGLCAMATR
TREQLIKEVIKNAAFANLLELVPDMREIIHDFHNSRFTRCLQTMEKIRPE
LMLDMYVGSQNHVDVLFRMIRRKAIVQYTTPFTSVLLRRMESVFNTTAEE
LEEELLALIESGAIEARIDSEKHELLAKKARPRAEAIKSALRKGRDVFDE
AEAMLLRMTLLKNNLQIEQPGNPIGSMGPRGGSINSVVDNVEDRGRPLRH
G*
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spliced messenger RNA

>Gchil4033.t1 ID=Gchil4033.t1|Name=Gchil4033.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1356bp|location=Sequence derived from alignment at tig00004373_pilon:138935..140290- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGACGAGGCCCTCACATTCGATATAGATGTGTACGCCGCACGATA
CAGAGGCCGCGGCAAGATCCATCGCATGCAATTCATTGCGAAAAAATGCC
CTCCACTGCGCTCTGAGGCGCTGCGCATCGCCATCATCGAAGCTAAAAAA
GGTCGCGATACTCTTCAGTACAAAGACCTCATTAAGGAAGCAGACGGTCT
CATCGGCGATGAATTCGAACTTGATTCAATTTGGGTGGAAGAGAATAATC
GATGGGCAGCTCGTGAAATAGAGAAGTTACATCGCGCACTGGACGATAAT
AATCAGCCGCAAAACAAAGAGGTCCTGAGGAATATACACAGCGACTTGGG
AGACTTTTTTCACATGCGGGGTAAACTTCAACACGCCAGAGGTGACCACA
TCAAGACTCGTGATTATTGTACTCGTGCGGAACATAGCATTTATATGTGC
TACAAGGTCATTCAGGTCAGTATTGAGGACTCCGACTTCGGCCATGTGGA
GAACCATTTCCTCATGGCTGAGAACACTCCCGACTCCGACAAAACTTCGC
CAGAAATGTGCAACATGCGCGCCTGTGCTGGCTTGGCTAATATGGTCAGA
GGTCAGTACGAACAGGCTGTTAAGCGATTCGTTGAGACAAACACCGATCC
AAGTGAGGCAAGTATAAGCGAACTGTCAAAAAAGTTTGGCGATATGATTG
CTCTAGAAGACGTTGCGGTCTATGGTGGACTTTGTGCAATGGCTACAAGG
ACAAGAGAACAACTTATCAAAGAAGTTATCAAGAACGCAGCGTTTGCCAA
TCTACTCGAACTAGTTCCAGACATGCGCGAGATCATCCACGACTTCCATA
ACTCTCGTTTCACTCGGTGTCTGCAAACCATGGAAAAAATTCGACCTGAG
CTTATGCTGGACATGTACGTAGGATCTCAAAACCATGTAGATGTGCTTTT
CCGGATGATACGTCGCAAAGCGATTGTGCAGTATACAACACCTTTCACAT
CCGTATTGTTACGACGGATGGAGTCTGTGTTTAACACGACGGCCGAAGAA
CTTGAAGAAGAACTTCTTGCATTGATTGAGTCTGGTGCAATCGAAGCCCG
AATTGACTCGGAAAAGCATGAGTTGCTTGCCAAGAAGGCCCGGCCACGGG
CAGAGGCCATAAAGAGCGCGCTCCGCAAAGGTCGCGATGTGTTCGACGAG
GCTGAGGCCATGCTGTTGCGGATGACACTTTTAAAGAACAATCTGCAAAT
CGAACAGCCCGGGAACCCTATTGGATCTATGGGACCGCGAGGTGGAAGCA
TTAACTCTGTCGTCGACAACGTGGAGGATAGGGGGCGACCTCTTCGTCAT
GGGTAG
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protein sequence of Gchil4033.t1

>Gchil4033.t1 ID=Gchil4033.t1|Name=Gchil4033.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=452bp
MQDEALTFDIDVYAARYRGRGKIHRMQFIAKKCPPLRSEALRIAIIEAKK
GRDTLQYKDLIKEADGLIGDEFELDSIWVEENNRWAAREIEKLHRALDDN
NQPQNKEVLRNIHSDLGDFFHMRGKLQHARGDHIKTRDYCTRAEHSIYMC
YKVIQVSIEDSDFGHVENHFLMAENTPDSDKTSPEMCNMRACAGLANMVR
GQYEQAVKRFVETNTDPSEASISELSKKFGDMIALEDVAVYGGLCAMATR
TREQLIKEVIKNAAFANLLELVPDMREIIHDFHNSRFTRCLQTMEKIRPE
LMLDMYVGSQNHVDVLFRMIRRKAIVQYTTPFTSVLLRRMESVFNTTAEE
LEEELLALIESGAIEARIDSEKHELLAKKARPRAEAIKSALRKGRDVFDE
AEAMLLRMTLLKNNLQIEQPGNPIGSMGPRGGSINSVVDNVEDRGRPLRH
G*
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mRNA from alignment at tig00004373_pilon:138935..140290-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4033.t1 ID=Gchil4033.t1|Name=Gchil4033.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1356bp|location=Sequence derived from alignment at tig00004373_pilon:138935..140290- (Gracilaria chilensis NLEC103_M9 male)
ATGCAAGACGAGGCCCTCACATTCGATATAGATGTGTACGCCGCACGATA
CAGAGGCCGCGGCAAGATCCATCGCATGCAATTCATTGCGAAAAAATGCC
CTCCACTGCGCTCTGAGGCGCTGCGCATCGCCATCATCGAAGCTAAAAAA
GGTCGCGATACTCTTCAGTACAAAGACCTCATTAAGGAAGCAGACGGTCT
CATCGGCGATGAATTCGAACTTGATTCAATTTGGGTGGAAGAGAATAATC
GATGGGCAGCTCGTGAAATAGAGAAGTTACATCGCGCACTGGACGATAAT
AATCAGCCGCAAAACAAAGAGGTCCTGAGGAATATACACAGCGACTTGGG
AGACTTTTTTCACATGCGGGGTAAACTTCAACACGCCAGAGGTGACCACA
TCAAGACTCGTGATTATTGTACTCGTGCGGAACATAGCATTTATATGTGC
TACAAGGTCATTCAGGTCAGTATTGAGGACTCCGACTTCGGCCATGTGGA
GAACCATTTCCTCATGGCTGAGAACACTCCCGACTCCGACAAAACTTCGC
CAGAAATGTGCAACATGCGCGCCTGTGCTGGCTTGGCTAATATGGTCAGA
GGTCAGTACGAACAGGCTGTTAAGCGATTCGTTGAGACAAACACCGATCC
AAGTGAGGCAAGTATAAGCGAACTGTCAAAAAAGTTTGGCGATATGATTG
CTCTAGAAGACGTTGCGGTCTATGGTGGACTTTGTGCAATGGCTACAAGG
ACAAGAGAACAACTTATCAAAGAAGTTATCAAGAACGCAGCGTTTGCCAA
TCTACTCGAACTAGTTCCAGACATGCGCGAGATCATCCACGACTTCCATA
ACTCTCGTTTCACTCGGTGTCTGCAAACCATGGAAAAAATTCGACCTGAG
CTTATGCTGGACATGTACGTAGGATCTCAAAACCATGTAGATGTGCTTTT
CCGGATGATACGTCGCAAAGCGATTGTGCAGTATACAACACCTTTCACAT
CCGTATTGTTACGACGGATGGAGTCTGTGTTTAACACGACGGCCGAAGAA
CTTGAAGAAGAACTTCTTGCATTGATTGAGTCTGGTGCAATCGAAGCCCG
AATTGACTCGGAAAAGCATGAGTTGCTTGCCAAGAAGGCCCGGCCACGGG
CAGAGGCCATAAAGAGCGCGCTCCGCAAAGGTCGCGATGTGTTCGACGAG
GCTGAGGCCATGCTGTTGCGGATGACACTTTTAAAGAACAATCTGCAAAT
CGAACAGCCCGGGAACCCTATTGGATCTATGGGACCGCGAGGTGGAAGCA
TTAACTCTGTCGTCGACAACGTGGAGGATAGGGGGCGACCTCTTCGTCAT
GGGTAG
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Coding sequence (CDS) from alignment at tig00004373_pilon:138935..140290-

>Gchil4033.t1 ID=Gchil4033.t1|Name=Gchil4033.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1356bp|location=Sequence derived from alignment at tig00004373_pilon:138935..140290- (Gracilaria chilensis NLEC103_M9 male)
ATGCAAGACGAGGCCCTCACATTCGATATAGATGTGTACGCCGCACGATA
CAGAGGCCGCGGCAAGATCCATCGCATGCAATTCATTGCGAAAAAATGCC
CTCCACTGCGCTCTGAGGCGCTGCGCATCGCCATCATCGAAGCTAAAAAA
GGTCGCGATACTCTTCAGTACAAAGACCTCATTAAGGAAGCAGACGGTCT
CATCGGCGATGAATTCGAACTTGATTCAATTTGGGTGGAAGAGAATAATC
GATGGGCAGCTCGTGAAATAGAGAAGTTACATCGCGCACTGGACGATAAT
AATCAGCCGCAAAACAAAGAGGTCCTGAGGAATATACACAGCGACTTGGG
AGACTTTTTTCACATGCGGGGTAAACTTCAACACGCCAGAGGTGACCACA
TCAAGACTCGTGATTATTGTACTCGTGCGGAACATAGCATTTATATGTGC
TACAAGGTCATTCAGGTCAGTATTGAGGACTCCGACTTCGGCCATGTGGA
GAACCATTTCCTCATGGCTGAGAACACTCCCGACTCCGACAAAACTTCGC
CAGAAATGTGCAACATGCGCGCCTGTGCTGGCTTGGCTAATATGGTCAGA
GGTCAGTACGAACAGGCTGTTAAGCGATTCGTTGAGACAAACACCGATCC
AAGTGAGGCAAGTATAAGCGAACTGTCAAAAAAGTTTGGCGATATGATTG
CTCTAGAAGACGTTGCGGTCTATGGTGGACTTTGTGCAATGGCTACAAGG
ACAAGAGAACAACTTATCAAAGAAGTTATCAAGAACGCAGCGTTTGCCAA
TCTACTCGAACTAGTTCCAGACATGCGCGAGATCATCCACGACTTCCATA
ACTCTCGTTTCACTCGGTGTCTGCAAACCATGGAAAAAATTCGACCTGAG
CTTATGCTGGACATGTACGTAGGATCTCAAAACCATGTAGATGTGCTTTT
CCGGATGATACGTCGCAAAGCGATTGTGCAGTATACAACACCTTTCACAT
CCGTATTGTTACGACGGATGGAGTCTGTGTTTAACACGACGGCCGAAGAA
CTTGAAGAAGAACTTCTTGCATTGATTGAGTCTGGTGCAATCGAAGCCCG
AATTGACTCGGAAAAGCATGAGTTGCTTGCCAAGAAGGCCCGGCCACGGG
CAGAGGCCATAAAGAGCGCGCTCCGCAAAGGTCGCGATGTGTTCGACGAG
GCTGAGGCCATGCTGTTGCGGATGACACTTTTAAAGAACAATCTGCAAAT
CGAACAGCCCGGGAACCCTATTGGATCTATGGGACCGCGAGGTGGAAGCA
TTAACTCTGTCGTCGACAACGTGGAGGATAGGGGGCGACCTCTTCGTCAT
GGGTAG
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