Gchil4029.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4029.t1
Unique Name	Gchil4029.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	662

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:132684..134669 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005702788.1
Preferred name	RPA70B
PFAMs	REPA_OB_2,Rep-A_N,Rep_fac-A_C,tRNA_anti-codon
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K07466,ko:K14777
KEGG Pathway	ko03030,ko03420,ko03430,ko03440,ko03460,map03030,map03420,map03430,map03440,map03460
KEGG Module	M00288
GOs	GO:0000003,GO:0000228,GO:0000278,GO:0000723,GO:0000724,GO:0000725,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005662,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006278,GO:0006279,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007004,GO:0007049,GO:0007063,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010224,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010638,GO:0010639,GO:0010833,GO:0010948,GO:0016043,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022402,GO:0022414,GO:0030894,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032200,GO:0032204,GO:0032206,GO:0032210,GO:0032212,GO:0032392,GO:0032508,GO:0032879,GO:0032880,GO:0032991,GO:0032993,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035861,GO:0042162,GO:0042592,GO:0043047,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043596,GO:0043601,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0045786,GO:0045839,GO:0045875,GO:0045930,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051098,GO:0051101,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051173,GO:0051276,GO:0051321,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060249,GO:0060255,GO:0060341,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070034,GO:0071103,GO:0071704,GO:0071840,GO:0071897,GO:0071922,GO:0071923,GO:0080090,GO:0090304,GO:0090734,GO:0097159,GO:0098687,GO:0098847,GO:0106111,GO:0106112,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902969,GO:1903046,GO:1903047,GO:1903827,GO:1903828,GO:1904356,GO:1904358,GO:1905405,GO:1905412,GO:1905634,GO:2000112,GO:2000278,GO:2000573,GO:2001251,GO:2001252
Evalue	4.01e-112
EggNOG OGs	COG1599@1\|root,KOG0851@2759\|Eukaryota
EC	3.6.4.13
Description	DNA recombination
COG category	L
BRITE	ko00000,ko00001,ko00002,ko01000,ko03000,ko03009,ko03032,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4029	Gchil4029	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 132684..134669 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4029.t1.start1	Gchil4029.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 132684..132686 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4029.t1.CDS1	Gchil4029.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 132684..134669 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4029.t1.exon1	Gchil4029.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 132684..134669 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4029.t1.stop1	Gchil4029.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 134667..134669 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4029.t1	Gchil4029.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 132684..134669 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:132684..134669+
coding sequence from alignment at tig00004373_pilon:132684..134669+

mRNA sequence

>Gchil4029.t1 ID=Gchil4029.t1|Name=Gchil4029.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=662bp
MAQQMQLTRGAIAEIHRTGKATGEPLLQVIDLKPIAPANAANGNAPRYRF
GLSDGVHFMQAITASQLTSLITDGHLKSLSLVRLKDFISNNINNKCILIV
LNLTVISQVLSKIGNPLNAYAALGQHQNQPSNVVMQPLPAFPAANGNGRP
AVAQHQGVPPPYSGNGLGVNNTSAQPPQNAFSPVGFGGNGNQWNAPNSYS
NNGPVMKMNTTPASIFRPIQTINPYQNGWTIRGRCTYKSDLRKFQNSRGE
GQVISFELTDESGSIRVTGFTQRAPEIQEKVHMNRLYKVSRGLLKQANER
FNRSTSNFEMTLENSSLLEQMDDDGSFMQIKYNFTKIAELDSVDVKGNCD
VVGIVTAVGPLSEITIRSTGEPCTRRSITLTDDSNASVELTLWRKQAESF
LTEDDLARHPVLLLRNAQRGDFGRVSLNVSRMTTIEKDPVNVPEANKLRV
WFDKGGLANVNVQSVTAGPGSGGKITGSRKTLMEAKVEDVDPVFSSGGGS
GASATFVTRAVIGFIATKSDLYYPGDPETKKKVIQQAGGIWLSESSGRQL
TDAEVVWRYILSMKIMDSSISEWVSAFDEVGQVLFGRSADELRQLKEKDS
AMFESILDDASFRPLLMKIQVKERMWQNVQKIRYTVSRVELIDFASEGHQ
LLKEIAAYGAI*

spliced messenger RNA

>Gchil4029.t1 ID=Gchil4029.t1|Name=Gchil4029.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1986bp|location=Sequence derived from alignment at tig00004373_pilon:132684..134669+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCAGCAGATGCAGCTCACTCGCGGCGCTATCGCCGAGATTCACCG
CACCGGAAAGGCAACGGGCGAGCCGCTACTTCAGGTCATTGACCTCAAGC
CCATCGCGCCAGCCAATGCCGCCAATGGCAACGCACCGCGCTACCGCTTC
GGTCTAAGCGACGGCGTTCATTTCATGCAAGCCATCACTGCCTCACAGCT
TACCTCTCTCATCACAGACGGTCATCTCAAGTCGCTCTCGCTTGTCCGCC
TCAAGGATTTCATCAGCAACAATATCAACAACAAATGTATTCTCATTGTG
CTCAATCTCACCGTCATTTCCCAGGTGCTTAGCAAAATTGGAAATCCGCT
CAATGCGTATGCTGCGCTGGGTCAGCACCAGAATCAACCGTCAAACGTAG
TCATGCAACCTCTCCCTGCCTTTCCCGCCGCGAACGGGAACGGCAGACCT
GCAGTTGCGCAACACCAGGGCGTACCTCCCCCTTACAGTGGAAATGGGCT
TGGTGTGAACAATACTTCAGCACAGCCCCCTCAGAATGCGTTTTCGCCAG
TAGGTTTTGGCGGAAATGGGAATCAATGGAATGCTCCCAATTCATACTCG
AACAATGGACCTGTTATGAAGATGAACACCACCCCCGCAAGCATATTTCG
CCCAATCCAGACCATCAACCCGTATCAGAATGGGTGGACCATTCGCGGCC
GTTGCACATACAAGAGCGACCTGCGTAAGTTCCAGAACTCCAGAGGAGAA
GGTCAGGTCATCAGTTTCGAACTCACCGACGAATCGGGCTCTATTCGCGT
TACAGGCTTCACACAACGTGCCCCAGAAATTCAAGAGAAGGTTCACATGA
ATCGTTTGTACAAGGTGTCTCGTGGCCTGCTCAAACAGGCGAACGAGCGT
TTTAATCGCTCCACTTCCAACTTCGAGATGACGCTGGAAAACAGTTCACT
ATTAGAACAAATGGATGATGATGGCTCATTCATGCAAATCAAGTACAATT
TCACCAAGATTGCAGAGCTTGATTCGGTCGATGTGAAGGGTAATTGCGAC
GTTGTCGGCATCGTGACTGCGGTTGGTCCGCTTTCGGAAATAACAATCCG
AAGTACTGGCGAGCCCTGCACTCGTAGGAGCATTACTCTCACAGATGATT
CCAATGCGTCCGTGGAGCTCACCTTGTGGCGAAAGCAGGCTGAGTCTTTT
CTAACCGAAGATGACCTTGCTCGTCATCCTGTCCTTCTGTTGCGCAATGC
CCAACGCGGAGACTTTGGGCGCGTCAGCTTGAACGTTTCTCGTATGACCA
CTATTGAAAAGGATCCTGTCAACGTTCCAGAGGCGAACAAGCTCAGGGTT
TGGTTTGACAAGGGAGGTTTGGCAAATGTAAATGTACAGTCTGTGACAGC
GGGTCCCGGCAGCGGAGGGAAGATCACAGGGAGCAGAAAGACATTGATGG
AAGCAAAGGTTGAGGATGTGGACCCAGTGTTTTCTAGTGGTGGCGGTAGT
GGGGCTAGTGCGACTTTTGTCACTCGGGCTGTGATTGGGTTTATTGCGAC
AAAAAGTGATTTGTACTATCCTGGGGACCCGGAGACGAAGAAAAAGGTTA
TTCAGCAAGCAGGTGGTATTTGGTTGAGCGAGAGTTCAGGGCGGCAATTA
ACCGACGCTGAAGTTGTATGGCGCTATATCTTGAGCATGAAAATCATGGA
TAGTTCGATATCAGAATGGGTGAGCGCATTTGACGAAGTGGGTCAAGTGT
TATTTGGTCGTTCTGCCGACGAGCTTCGCCAACTGAAAGAAAAAGACTCA
GCAATGTTTGAGAGTATTTTGGACGATGCATCATTCCGACCGCTGCTAAT
GAAGATTCAGGTAAAGGAGCGCATGTGGCAAAATGTCCAGAAGATTCGGT
ACACTGTTTCGCGGGTCGAGCTTATTGATTTTGCCTCAGAAGGTCACCAA
CTGTTGAAAGAAATTGCTGCGTATGGTGCCATTTAA

protein sequence of Gchil4029.t1

>Gchil4029.t1 ID=Gchil4029.t1|Name=Gchil4029.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=662bp
MAQQMQLTRGAIAEIHRTGKATGEPLLQVIDLKPIAPANAANGNAPRYRF
GLSDGVHFMQAITASQLTSLITDGHLKSLSLVRLKDFISNNINNKCILIV
LNLTVISQVLSKIGNPLNAYAALGQHQNQPSNVVMQPLPAFPAANGNGRP
AVAQHQGVPPPYSGNGLGVNNTSAQPPQNAFSPVGFGGNGNQWNAPNSYS
NNGPVMKMNTTPASIFRPIQTINPYQNGWTIRGRCTYKSDLRKFQNSRGE
GQVISFELTDESGSIRVTGFTQRAPEIQEKVHMNRLYKVSRGLLKQANER
FNRSTSNFEMTLENSSLLEQMDDDGSFMQIKYNFTKIAELDSVDVKGNCD
VVGIVTAVGPLSEITIRSTGEPCTRRSITLTDDSNASVELTLWRKQAESF
LTEDDLARHPVLLLRNAQRGDFGRVSLNVSRMTTIEKDPVNVPEANKLRV
WFDKGGLANVNVQSVTAGPGSGGKITGSRKTLMEAKVEDVDPVFSSGGGS
GASATFVTRAVIGFIATKSDLYYPGDPETKKKVIQQAGGIWLSESSGRQL
TDAEVVWRYILSMKIMDSSISEWVSAFDEVGQVLFGRSADELRQLKEKDS
AMFESILDDASFRPLLMKIQVKERMWQNVQKIRYTVSRVELIDFASEGHQ
LLKEIAAYGAI*

mRNA from alignment at tig00004373_pilon:132684..134669+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4029.t1 ID=Gchil4029.t1|Name=Gchil4029.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1986bp|location=Sequence derived from alignment at tig00004373_pilon:132684..134669+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCAGCAGATGCAGCTCACTCGCGGCGCTATCGCCGAGATTCACCG
CACCGGAAAGGCAACGGGCGAGCCGCTACTTCAGGTCATTGACCTCAAGC
CCATCGCGCCAGCCAATGCCGCCAATGGCAACGCACCGCGCTACCGCTTC
GGTCTAAGCGACGGCGTTCATTTCATGCAAGCCATCACTGCCTCACAGCT
TACCTCTCTCATCACAGACGGTCATCTCAAGTCGCTCTCGCTTGTCCGCC
TCAAGGATTTCATCAGCAACAATATCAACAACAAATGTATTCTCATTGTG
CTCAATCTCACCGTCATTTCCCAGGTGCTTAGCAAAATTGGAAATCCGCT
CAATGCGTATGCTGCGCTGGGTCAGCACCAGAATCAACCGTCAAACGTAG
TCATGCAACCTCTCCCTGCCTTTCCCGCCGCGAACGGGAACGGCAGACCT
GCAGTTGCGCAACACCAGGGCGTACCTCCCCCTTACAGTGGAAATGGGCT
TGGTGTGAACAATACTTCAGCACAGCCCCCTCAGAATGCGTTTTCGCCAG
TAGGTTTTGGCGGAAATGGGAATCAATGGAATGCTCCCAATTCATACTCG
AACAATGGACCTGTTATGAAGATGAACACCACCCCCGCAAGCATATTTCG
CCCAATCCAGACCATCAACCCGTATCAGAATGGGTGGACCATTCGCGGCC
GTTGCACATACAAGAGCGACCTGCGTAAGTTCCAGAACTCCAGAGGAGAA
GGTCAGGTCATCAGTTTCGAACTCACCGACGAATCGGGCTCTATTCGCGT
TACAGGCTTCACACAACGTGCCCCAGAAATTCAAGAGAAGGTTCACATGA
ATCGTTTGTACAAGGTGTCTCGTGGCCTGCTCAAACAGGCGAACGAGCGT
TTTAATCGCTCCACTTCCAACTTCGAGATGACGCTGGAAAACAGTTCACT
ATTAGAACAAATGGATGATGATGGCTCATTCATGCAAATCAAGTACAATT
TCACCAAGATTGCAGAGCTTGATTCGGTCGATGTGAAGGGTAATTGCGAC
GTTGTCGGCATCGTGACTGCGGTTGGTCCGCTTTCGGAAATAACAATCCG
AAGTACTGGCGAGCCCTGCACTCGTAGGAGCATTACTCTCACAGATGATT
CCAATGCGTCCGTGGAGCTCACCTTGTGGCGAAAGCAGGCTGAGTCTTTT
CTAACCGAAGATGACCTTGCTCGTCATCCTGTCCTTCTGTTGCGCAATGC
CCAACGCGGAGACTTTGGGCGCGTCAGCTTGAACGTTTCTCGTATGACCA
CTATTGAAAAGGATCCTGTCAACGTTCCAGAGGCGAACAAGCTCAGGGTT
TGGTTTGACAAGGGAGGTTTGGCAAATGTAAATGTACAGTCTGTGACAGC
GGGTCCCGGCAGCGGAGGGAAGATCACAGGGAGCAGAAAGACATTGATGG
AAGCAAAGGTTGAGGATGTGGACCCAGTGTTTTCTAGTGGTGGCGGTAGT
GGGGCTAGTGCGACTTTTGTCACTCGGGCTGTGATTGGGTTTATTGCGAC
AAAAAGTGATTTGTACTATCCTGGGGACCCGGAGACGAAGAAAAAGGTTA
TTCAGCAAGCAGGTGGTATTTGGTTGAGCGAGAGTTCAGGGCGGCAATTA
ACCGACGCTGAAGTTGTATGGCGCTATATCTTGAGCATGAAAATCATGGA
TAGTTCGATATCAGAATGGGTGAGCGCATTTGACGAAGTGGGTCAAGTGT
TATTTGGTCGTTCTGCCGACGAGCTTCGCCAACTGAAAGAAAAAGACTCA
GCAATGTTTGAGAGTATTTTGGACGATGCATCATTCCGACCGCTGCTAAT
GAAGATTCAGGTAAAGGAGCGCATGTGGCAAAATGTCCAGAAGATTCGGT
ACACTGTTTCGCGGGTCGAGCTTATTGATTTTGCCTCAGAAGGTCACCAA
CTGTTGAAAGAAATTGCTGCGTATGGTGCCATTTAA

Coding sequence (CDS) from alignment at tig00004373_pilon:132684..134669+

>Gchil4029.t1 ID=Gchil4029.t1|Name=Gchil4029.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1986bp|location=Sequence derived from alignment at tig00004373_pilon:132684..134669+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCAGCAGATGCAGCTCACTCGCGGCGCTATCGCCGAGATTCACCG
CACCGGAAAGGCAACGGGCGAGCCGCTACTTCAGGTCATTGACCTCAAGC
CCATCGCGCCAGCCAATGCCGCCAATGGCAACGCACCGCGCTACCGCTTC
GGTCTAAGCGACGGCGTTCATTTCATGCAAGCCATCACTGCCTCACAGCT
TACCTCTCTCATCACAGACGGTCATCTCAAGTCGCTCTCGCTTGTCCGCC
TCAAGGATTTCATCAGCAACAATATCAACAACAAATGTATTCTCATTGTG
CTCAATCTCACCGTCATTTCCCAGGTGCTTAGCAAAATTGGAAATCCGCT
CAATGCGTATGCTGCGCTGGGTCAGCACCAGAATCAACCGTCAAACGTAG
TCATGCAACCTCTCCCTGCCTTTCCCGCCGCGAACGGGAACGGCAGACCT
GCAGTTGCGCAACACCAGGGCGTACCTCCCCCTTACAGTGGAAATGGGCT
TGGTGTGAACAATACTTCAGCACAGCCCCCTCAGAATGCGTTTTCGCCAG
TAGGTTTTGGCGGAAATGGGAATCAATGGAATGCTCCCAATTCATACTCG
AACAATGGACCTGTTATGAAGATGAACACCACCCCCGCAAGCATATTTCG
CCCAATCCAGACCATCAACCCGTATCAGAATGGGTGGACCATTCGCGGCC
GTTGCACATACAAGAGCGACCTGCGTAAGTTCCAGAACTCCAGAGGAGAA
GGTCAGGTCATCAGTTTCGAACTCACCGACGAATCGGGCTCTATTCGCGT
TACAGGCTTCACACAACGTGCCCCAGAAATTCAAGAGAAGGTTCACATGA
ATCGTTTGTACAAGGTGTCTCGTGGCCTGCTCAAACAGGCGAACGAGCGT
TTTAATCGCTCCACTTCCAACTTCGAGATGACGCTGGAAAACAGTTCACT
ATTAGAACAAATGGATGATGATGGCTCATTCATGCAAATCAAGTACAATT
TCACCAAGATTGCAGAGCTTGATTCGGTCGATGTGAAGGGTAATTGCGAC
GTTGTCGGCATCGTGACTGCGGTTGGTCCGCTTTCGGAAATAACAATCCG
AAGTACTGGCGAGCCCTGCACTCGTAGGAGCATTACTCTCACAGATGATT
CCAATGCGTCCGTGGAGCTCACCTTGTGGCGAAAGCAGGCTGAGTCTTTT
CTAACCGAAGATGACCTTGCTCGTCATCCTGTCCTTCTGTTGCGCAATGC
CCAACGCGGAGACTTTGGGCGCGTCAGCTTGAACGTTTCTCGTATGACCA
CTATTGAAAAGGATCCTGTCAACGTTCCAGAGGCGAACAAGCTCAGGGTT
TGGTTTGACAAGGGAGGTTTGGCAAATGTAAATGTACAGTCTGTGACAGC
GGGTCCCGGCAGCGGAGGGAAGATCACAGGGAGCAGAAAGACATTGATGG
AAGCAAAGGTTGAGGATGTGGACCCAGTGTTTTCTAGTGGTGGCGGTAGT
GGGGCTAGTGCGACTTTTGTCACTCGGGCTGTGATTGGGTTTATTGCGAC
AAAAAGTGATTTGTACTATCCTGGGGACCCGGAGACGAAGAAAAAGGTTA
TTCAGCAAGCAGGTGGTATTTGGTTGAGCGAGAGTTCAGGGCGGCAATTA
ACCGACGCTGAAGTTGTATGGCGCTATATCTTGAGCATGAAAATCATGGA
TAGTTCGATATCAGAATGGGTGAGCGCATTTGACGAAGTGGGTCAAGTGT
TATTTGGTCGTTCTGCCGACGAGCTTCGCCAACTGAAAGAAAAAGACTCA
GCAATGTTTGAGAGTATTTTGGACGATGCATCATTCCGACCGCTGCTAAT
GAAGATTCAGGTAAAGGAGCGCATGTGGCAAAATGTCCAGAAGATTCGGT
ACACTGTTTCGCGGGTCGAGCTTATTGATTTTGCCTCAGAAGGTCACCAA
CTGTTGAAAGAAATTGCTGCGTATGGTGCCATTTAA