Gchil4028.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4028.t1
Unique NameGchil4028.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length523
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:130515..132288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_09220T0
Preferred nameUTP15
PFAMsUTP15_C,WD40
Max annot lvl33154|Opisthokonta
KEGG koko:K14549
KEGG Pathwayko03008,map03008
GOsGO:0000462,GO:0000785,GO:0000792,GO:0001650,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005783,GO:0006139,GO:0006355,GO:0006356,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0012505,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022603,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0033553,GO:0034455,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045765,GO:0045766,GO:0045893,GO:0045935,GO:0045943,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051171,GO:0051173,GO:0051239,GO:0051240,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090069,GO:0090070,GO:0090304,GO:0097159,GO:1901342,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1904018,GO:1990904,GO:2000026,GO:2000112,GO:2000232,GO:2000234,GO:2001141
Evalue1.51e-64
EggNOG OGsKOG0310@1|root,KOG0310@2759|Eukaryota,3926I@33154|Opisthokonta
Descriptionpositive regulation of rRNA processing
COG categoryJ
BRITEko00000,ko00001,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4028Gchil4028Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 130515..132288 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4028.t1Gchil4028.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 130515..132288 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4028.t1.stop1Gchil4028.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 130515..130517 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4028.t1.CDS1Gchil4028.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 130515..131709 -
Gchil4028.t1.CDS2Gchil4028.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 131915..132288 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4028.t1.exon1Gchil4028.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 130515..131709 -
Gchil4028.t1.exon2Gchil4028.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 131915..132288 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4028.t1.intron1Gchil4028.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 131710..131914 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4028.t1.start1Gchil4028.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 132286..132288 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4028.t1 ID=Gchil4028.t1|Name=Gchil4028.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=523bp
MAEQFLPLPIQRKRPRIQVAHPSQLTQWKHIQKVAAYRYDQAVTRVQFSP
LKPYELAVAHDFSVSLVNPSDGYTRKSLTKFRDVAYSPHYNKDGRLLVAG
CADGSAKVFDVAHRTMLRSFKAHEGSVRTAKFSADGRHVLTGSDDQTVRV
WDLATSTSLFSLREATDYVQAQAPSPASMHVWMTGSADRKARLYDLRSKD
CIFELVHSSSISDVHILPGGARAITIGGNEMRVWDFFVGGQVVYNLQPHS
KGVTCGVSNVLGNNFVTGGLDGNIKIHDLSNFQSKGLMPFRSPILSVDVC
SEGQRYAAGMANGKLEIRAHVRLKRKQQAPFRSDPFKDREFEGYGRGFER
IGVDRSRPRPGTQRYFNRGPDTKPSTEDVLIKHLSKPNLSKYDKSLKKFK
FGQALDLAIGTKKPEIVVCVVEELIIRGCLKGALFGRTLAELEPLLVMVR
KYIRIPQFSEYLSFVLHTILDLYGSEVGGGDRADDILRDIFSLLRSEMQA
CHDLSLVKGSVDSILSTMKYFA*
back to top

spliced messenger RNA

>Gchil4028.t1 ID=Gchil4028.t1|Name=Gchil4028.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1569bp|location=Sequence derived from alignment at tig00004373_pilon:130515..132288- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGAACAATTTCTCCCGCTCCCTATACAAAGGAAAAGGCCGCGCAT
CCAGGTAGCGCACCCCAGCCAGCTCACGCAATGGAAGCACATACAAAAAG
TGGCAGCCTATCGCTACGATCAGGCCGTCACGCGCGTGCAGTTTTCTCCG
TTGAAGCCATATGAACTTGCAGTTGCCCACGACTTTTCCGTATCATTGGT
CAATCCATCGGATGGGTATACAAGAAAAAGCCTCACTAAGTTTCGCGATG
TGGCCTACAGTCCGCACTACAATAAGGACGGACGCCTGTTGGTGGCTGGC
TGTGCTGATGGTTCTGCAAAAGTGTTTGATGTAGCACACCGTACTATGCT
TCGAAGTTTCAAAGCACATGAAGGGTCCGTTCGTACGGCCAAGTTCAGTG
CTGATGGCCGTCATGTTCTTACAGGTTCCGATGATCAAACCGTGCGAGTG
TGGGATCTGGCTACATCCACCAGTCTGTTTTCCCTTAGAGAAGCCACGGA
CTACGTCCAAGCGCAAGCCCCTTCTCCCGCTTCCATGCACGTGTGGATGA
CGGGTTCCGCAGATCGCAAAGCTCGTCTCTACGATTTACGCTCGAAGGAT
TGTATCTTTGAGTTGGTACATTCATCGTCTATAAGTGATGTTCACATTCT
TCCCGGTGGTGCGCGTGCAATTACAATTGGAGGTAATGAGATGCGCGTGT
GGGATTTCTTTGTAGGCGGGCAGGTGGTTTACAATCTACAACCACATTCC
AAGGGAGTTACGTGCGGTGTTTCAAACGTCTTGGGCAACAATTTTGTGAC
GGGTGGTCTTGATGGGAACATTAAGATTCACGACCTTTCCAATTTTCAAT
CCAAGGGACTCATGCCCTTCAGGTCGCCGATCTTGTCTGTAGATGTTTGT
TCGGAAGGCCAGAGATATGCAGCTGGTATGGCAAACGGAAAGCTAGAGAT
TAGGGCTCATGTGAGGTTGAAACGAAAGCAGCAAGCACCATTCCGCTCAG
ATCCGTTTAAAGACCGAGAGTTTGAAGGTTATGGTCGAGGCTTTGAAAGA
ATAGGAGTGGATCGCAGTAGACCTCGCCCCGGTACGCAGCGTTACTTTAA
CCGTGGTCCTGACACGAAGCCTAGCACTGAGGATGTGCTTATCAAGCATC
TGTCGAAACCAAATTTATCCAAGTATGACAAAAGTCTTAAGAAATTTAAA
TTCGGGCAAGCCCTGGATCTTGCTATTGGAACAAAGAAACCTGAGATCGT
CGTATGCGTTGTCGAGGAACTTATCATTCGCGGATGTTTGAAAGGTGCAC
TTTTTGGGAGGACATTAGCTGAGTTAGAACCGTTGCTAGTCATGGTCAGA
AAGTACATTCGCATCCCCCAGTTTTCGGAATATCTCTCGTTCGTGTTGCA
CACCATACTGGATCTATACGGTTCCGAAGTTGGGGGGGGTGACCGTGCTG
ATGACATCCTGAGAGACATTTTCTCGCTGCTTCGATCTGAAATGCAAGCT
TGTCACGACTTGTCCTTAGTGAAGGGGAGTGTGGACTCTATTTTGAGCAC
CATGAAATACTTTGCGTGA
back to top

protein sequence of Gchil4028.t1

>Gchil4028.t1 ID=Gchil4028.t1|Name=Gchil4028.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=523bp
MAEQFLPLPIQRKRPRIQVAHPSQLTQWKHIQKVAAYRYDQAVTRVQFSP
LKPYELAVAHDFSVSLVNPSDGYTRKSLTKFRDVAYSPHYNKDGRLLVAG
CADGSAKVFDVAHRTMLRSFKAHEGSVRTAKFSADGRHVLTGSDDQTVRV
WDLATSTSLFSLREATDYVQAQAPSPASMHVWMTGSADRKARLYDLRSKD
CIFELVHSSSISDVHILPGGARAITIGGNEMRVWDFFVGGQVVYNLQPHS
KGVTCGVSNVLGNNFVTGGLDGNIKIHDLSNFQSKGLMPFRSPILSVDVC
SEGQRYAAGMANGKLEIRAHVRLKRKQQAPFRSDPFKDREFEGYGRGFER
IGVDRSRPRPGTQRYFNRGPDTKPSTEDVLIKHLSKPNLSKYDKSLKKFK
FGQALDLAIGTKKPEIVVCVVEELIIRGCLKGALFGRTLAELEPLLVMVR
KYIRIPQFSEYLSFVLHTILDLYGSEVGGGDRADDILRDIFSLLRSEMQA
CHDLSLVKGSVDSILSTMKYFA*
back to top

mRNA from alignment at tig00004373_pilon:130515..132288-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4028.t1 ID=Gchil4028.t1|Name=Gchil4028.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1774bp|location=Sequence derived from alignment at tig00004373_pilon:130515..132288- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGAACAATTTCTCCCGCTCCCTATACAAAGGAAAAGGCCGCGCAT
CCAGGTAGCGCACCCCAGCCAGCTCACGCAATGGAAGCACATACAAAAAG
TGGCAGCCTATCGCTACGATCAGGCCGTCACGCGCGTGCAGTTTTCTCCG
TTGAAGCCATATGAACTTGCAGTTGCCCACGACTTTTCCGTATCATTGGT
CAATCCATCGGATGGGTATACAAGAAAAAGCCTCACTAAGTTTCGCGATG
TGGCCTACAGTCCGCACTACAATAAGGACGGACGCCTGTTGGTGGCTGGC
TGTGCTGATGGTTCTGCAAAAGTGTTTGATGTAGCACACCGTACTATGCT
TCGAAGTTTCAAAGCACATGAAGGGTATGTATCCATTCTTTTCTATGATA
CCAATTGTTGAGGTGATGCGACTTTATAACATAGTTCACTCTGAGGACTA
CTAGTACTTTGACGAAAACTTATCATTTGTCTTTCGCTCCTATCTGATCA
ACGCATTCCACATTTTACGCCCGATGTCAAAGCTTTTACTAACAGCCCAA
TCTCGCATGCAACATCTTTTCTACAACAGGTCCGTTCGTACGGCCAAGTT
CAGTGCTGATGGCCGTCATGTTCTTACAGGTTCCGATGATCAAACCGTGC
GAGTGTGGGATCTGGCTACATCCACCAGTCTGTTTTCCCTTAGAGAAGCC
ACGGACTACGTCCAAGCGCAAGCCCCTTCTCCCGCTTCCATGCACGTGTG
GATGACGGGTTCCGCAGATCGCAAAGCTCGTCTCTACGATTTACGCTCGA
AGGATTGTATCTTTGAGTTGGTACATTCATCGTCTATAAGTGATGTTCAC
ATTCTTCCCGGTGGTGCGCGTGCAATTACAATTGGAGGTAATGAGATGCG
CGTGTGGGATTTCTTTGTAGGCGGGCAGGTGGTTTACAATCTACAACCAC
ATTCCAAGGGAGTTACGTGCGGTGTTTCAAACGTCTTGGGCAACAATTTT
GTGACGGGTGGTCTTGATGGGAACATTAAGATTCACGACCTTTCCAATTT
TCAATCCAAGGGACTCATGCCCTTCAGGTCGCCGATCTTGTCTGTAGATG
TTTGTTCGGAAGGCCAGAGATATGCAGCTGGTATGGCAAACGGAAAGCTA
GAGATTAGGGCTCATGTGAGGTTGAAACGAAAGCAGCAAGCACCATTCCG
CTCAGATCCGTTTAAAGACCGAGAGTTTGAAGGTTATGGTCGAGGCTTTG
AAAGAATAGGAGTGGATCGCAGTAGACCTCGCCCCGGTACGCAGCGTTAC
TTTAACCGTGGTCCTGACACGAAGCCTAGCACTGAGGATGTGCTTATCAA
GCATCTGTCGAAACCAAATTTATCCAAGTATGACAAAAGTCTTAAGAAAT
TTAAATTCGGGCAAGCCCTGGATCTTGCTATTGGAACAAAGAAACCTGAG
ATCGTCGTATGCGTTGTCGAGGAACTTATCATTCGCGGATGTTTGAAAGG
TGCACTTTTTGGGAGGACATTAGCTGAGTTAGAACCGTTGCTAGTCATGG
TCAGAAAGTACATTCGCATCCCCCAGTTTTCGGAATATCTCTCGTTCGTG
TTGCACACCATACTGGATCTATACGGTTCCGAAGTTGGGGGGGGTGACCG
TGCTGATGACATCCTGAGAGACATTTTCTCGCTGCTTCGATCTGAAATGC
AAGCTTGTCACGACTTGTCCTTAGTGAAGGGGAGTGTGGACTCTATTTTG
AGCACCATGAAATACTTTGCGTGA
back to top

Coding sequence (CDS) from alignment at tig00004373_pilon:130515..132288-

>Gchil4028.t1 ID=Gchil4028.t1|Name=Gchil4028.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1569bp|location=Sequence derived from alignment at tig00004373_pilon:130515..132288- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGAACAATTTCTCCCGCTCCCTATACAAAGGAAAAGGCCGCGCAT
CCAGGTAGCGCACCCCAGCCAGCTCACGCAATGGAAGCACATACAAAAAG
TGGCAGCCTATCGCTACGATCAGGCCGTCACGCGCGTGCAGTTTTCTCCG
TTGAAGCCATATGAACTTGCAGTTGCCCACGACTTTTCCGTATCATTGGT
CAATCCATCGGATGGGTATACAAGAAAAAGCCTCACTAAGTTTCGCGATG
TGGCCTACAGTCCGCACTACAATAAGGACGGACGCCTGTTGGTGGCTGGC
TGTGCTGATGGTTCTGCAAAAGTGTTTGATGTAGCACACCGTACTATGCT
TCGAAGTTTCAAAGCACATGAAGGGTCCGTTCGTACGGCCAAGTTCAGTG
CTGATGGCCGTCATGTTCTTACAGGTTCCGATGATCAAACCGTGCGAGTG
TGGGATCTGGCTACATCCACCAGTCTGTTTTCCCTTAGAGAAGCCACGGA
CTACGTCCAAGCGCAAGCCCCTTCTCCCGCTTCCATGCACGTGTGGATGA
CGGGTTCCGCAGATCGCAAAGCTCGTCTCTACGATTTACGCTCGAAGGAT
TGTATCTTTGAGTTGGTACATTCATCGTCTATAAGTGATGTTCACATTCT
TCCCGGTGGTGCGCGTGCAATTACAATTGGAGGTAATGAGATGCGCGTGT
GGGATTTCTTTGTAGGCGGGCAGGTGGTTTACAATCTACAACCACATTCC
AAGGGAGTTACGTGCGGTGTTTCAAACGTCTTGGGCAACAATTTTGTGAC
GGGTGGTCTTGATGGGAACATTAAGATTCACGACCTTTCCAATTTTCAAT
CCAAGGGACTCATGCCCTTCAGGTCGCCGATCTTGTCTGTAGATGTTTGT
TCGGAAGGCCAGAGATATGCAGCTGGTATGGCAAACGGAAAGCTAGAGAT
TAGGGCTCATGTGAGGTTGAAACGAAAGCAGCAAGCACCATTCCGCTCAG
ATCCGTTTAAAGACCGAGAGTTTGAAGGTTATGGTCGAGGCTTTGAAAGA
ATAGGAGTGGATCGCAGTAGACCTCGCCCCGGTACGCAGCGTTACTTTAA
CCGTGGTCCTGACACGAAGCCTAGCACTGAGGATGTGCTTATCAAGCATC
TGTCGAAACCAAATTTATCCAAGTATGACAAAAGTCTTAAGAAATTTAAA
TTCGGGCAAGCCCTGGATCTTGCTATTGGAACAAAGAAACCTGAGATCGT
CGTATGCGTTGTCGAGGAACTTATCATTCGCGGATGTTTGAAAGGTGCAC
TTTTTGGGAGGACATTAGCTGAGTTAGAACCGTTGCTAGTCATGGTCAGA
AAGTACATTCGCATCCCCCAGTTTTCGGAATATCTCTCGTTCGTGTTGCA
CACCATACTGGATCTATACGGTTCCGAAGTTGGGGGGGGTGACCGTGCTG
ATGACATCCTGAGAGACATTTTCTCGCTGCTTCGATCTGAAATGCAAGCT
TGTCACGACTTGTCCTTAGTGAAGGGGAGTGTGGACTCTATTTTGAGCAC
CATGAAATACTTTGCGTGA
back to top