Gchil4022.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4022.t1
Unique Name	Gchil4022.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	507

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:27933..29453 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706753.1
Preferred name	SUP35
PFAMs	GTP_EFTU,GTP_EFTU_D2,GTP_EFTU_D3
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03267
KEGG Pathway	ko03015,map03015
GOs	GO:0000166,GO:0000287,GO:0000288,GO:0000956,GO:0001882,GO:0001883,GO:0002181,GO:0002184,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003747,GO:0003824,GO:0003924,GO:0005085,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006415,GO:0006518,GO:0006725,GO:0006807,GO:0008022,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0018444,GO:0019001,GO:0019003,GO:0019222,GO:0019439,GO:0019538,GO:0019899,GO:0022411,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0034655,GO:0035639,GO:0035770,GO:0036094,GO:0036464,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0046872,GO:0048519,GO:0050789,GO:0051020,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:0098772,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Evalue	2.36e-164
EggNOG OGs	COG5256@1\|root,KOG0459@2759\|Eukaryota
Description	cytoplasmic translational termination
COG category	J
BRITE	ko00000,ko00001,ko03012,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4022	Gchil4022	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 27933..29453 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4022.t1.start1	Gchil4022.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 27933..27935 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4022.t1.CDS1	Gchil4022.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 27933..29453 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4022.t1.exon1	Gchil4022.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 27933..29453 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4022.t1.stop1	Gchil4022.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 29451..29453 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4022.t1	Gchil4022.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 27933..29453 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:27933..29453+
coding sequence from alignment at tig00004373_pilon:27933..29453+

mRNA sequence

>Gchil4022.t1 ID=Gchil4022.t1|Name=Gchil4022.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=507bp
MNPQASEFIPSWLSSPSPQQQLPSQARGSWEDEEPAPASTEPVVEQMGAA
KISDISASLAPENHSEISSENEKPTSSLRKDKADPSPEDDQGLKAIDAKA
DERADPKADSEPDENEFDSSNVALDEKKPLNVVLLGHVDAGKSTISGHLL
VLTGNVDERTMEKYEKEAKALNRESWKFAFALDTSEQEREKGKTEECGQA
SFTTDTRRFTILDAPGHKNYVPHMIGGASQADIGILVISARKGEFETGFE
RGGQTREHAMLAKTSGVRQMVVVVNKLDDPSVIKSDGSWSQERFEECKMK
LEPYLKNVGWNSKGLVWIPVSGLTGDNLKNKPSKGTCSWYNGESLLVTLE
HLRPPERLLNGPVKMPISEKHKEMGTMIMGKLESGVIQVNDTLVMMPNRV
EVLVDSVQLEGSTAQAAEPGDVVRLRLKGIDEEDVRVGFVLCSPRSLVSY
TSTFIAKLMILEHKSIICAGYSAVIHLHAAVGSVFAMVGMRFQTALSFMA
VYSLVL*

spliced messenger RNA

>Gchil4022.t1 ID=Gchil4022.t1|Name=Gchil4022.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1521bp|location=Sequence derived from alignment at tig00004373_pilon:27933..29453+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCCACAAGCAAGCGAATTCATCCCATCATGGCTTTCAAGCCCCTC
CCCCCAGCAACAGCTTCCCTCTCAGGCCAGGGGTTCGTGGGAAGACGAAG
AGCCCGCCCCCGCTTCCACCGAACCTGTTGTCGAGCAAATGGGCGCTGCT
AAGATCTCGGATATATCCGCCTCTCTAGCCCCGGAAAACCATTCCGAGAT
CAGTTCCGAGAACGAAAAGCCCACCAGCTCCCTCAGAAAGGATAAAGCAG
ATCCTTCACCCGAGGACGACCAAGGACTGAAAGCCATCGATGCCAAGGCG
GACGAGAGAGCTGACCCTAAAGCCGATTCAGAACCCGACGAAAACGAGTT
CGATTCATCTAATGTTGCTTTGGATGAGAAGAAGCCGTTAAATGTTGTAC
TTCTCGGTCATGTCGACGCGGGCAAGAGTACAATATCTGGCCATCTGCTT
GTGCTCACCGGTAATGTTGACGAGCGTACCATGGAAAAGTATGAAAAGGA
AGCAAAGGCTCTGAATCGCGAGAGCTGGAAGTTTGCGTTTGCGTTGGACA
CCTCCGAACAAGAGAGAGAGAAGGGGAAAACTGAAGAATGTGGTCAAGCA
AGCTTTACAACCGATACGCGGCGATTTACTATACTCGATGCTCCCGGTCA
TAAGAACTATGTCCCACATATGATAGGCGGCGCGTCGCAAGCAGATATTG
GGATTCTAGTCATTTCAGCCAGAAAAGGGGAGTTTGAAACCGGCTTCGAA
AGAGGGGGACAGACTAGGGAGCACGCTATGCTCGCGAAGACATCAGGTGT
TCGCCAGATGGTTGTGGTCGTCAACAAACTGGATGATCCAAGTGTTATCA
AGTCAGATGGATCTTGGAGTCAGGAGCGCTTCGAAGAATGCAAGATGAAG
CTCGAACCATATCTCAAGAATGTCGGTTGGAACTCGAAAGGCCTGGTTTG
GATTCCTGTTTCAGGTTTGACTGGGGACAACCTCAAGAACAAACCGTCTA
AAGGTACTTGTTCTTGGTACAATGGCGAGTCACTGCTTGTTACACTGGAG
CATTTGCGCCCGCCTGAGCGTCTTCTAAACGGACCAGTGAAGATGCCGAT
ATCAGAAAAGCACAAGGAAATGGGCACCATGATCATGGGCAAATTGGAAT
CTGGAGTTATTCAAGTAAATGATACTCTTGTTATGATGCCGAACCGTGTG
GAAGTTTTGGTTGATTCCGTTCAGCTAGAAGGATCCACGGCCCAAGCAGC
AGAGCCTGGCGATGTCGTTCGGCTTCGTTTGAAAGGAATCGATGAAGAGG
ATGTGAGAGTAGGCTTTGTGTTATGTTCACCCCGGAGTTTGGTTTCGTAT
ACAAGCACTTTCATTGCAAAGCTAATGATTCTAGAGCACAAGAGTATCAT
TTGTGCTGGCTATTCGGCTGTGATTCACCTCCATGCGGCTGTAGGAAGCG
TATTTGCCATGGTTGGAATGAGGTTTCAAACAGCTTTGAGTTTTATGGCG
GTGTACTCGCTGGTCTTATAA

protein sequence of Gchil4022.t1

>Gchil4022.t1 ID=Gchil4022.t1|Name=Gchil4022.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=507bp
MNPQASEFIPSWLSSPSPQQQLPSQARGSWEDEEPAPASTEPVVEQMGAA
KISDISASLAPENHSEISSENEKPTSSLRKDKADPSPEDDQGLKAIDAKA
DERADPKADSEPDENEFDSSNVALDEKKPLNVVLLGHVDAGKSTISGHLL
VLTGNVDERTMEKYEKEAKALNRESWKFAFALDTSEQEREKGKTEECGQA
SFTTDTRRFTILDAPGHKNYVPHMIGGASQADIGILVISARKGEFETGFE
RGGQTREHAMLAKTSGVRQMVVVVNKLDDPSVIKSDGSWSQERFEECKMK
LEPYLKNVGWNSKGLVWIPVSGLTGDNLKNKPSKGTCSWYNGESLLVTLE
HLRPPERLLNGPVKMPISEKHKEMGTMIMGKLESGVIQVNDTLVMMPNRV
EVLVDSVQLEGSTAQAAEPGDVVRLRLKGIDEEDVRVGFVLCSPRSLVSY
TSTFIAKLMILEHKSIICAGYSAVIHLHAAVGSVFAMVGMRFQTALSFMA
VYSLVL*

mRNA from alignment at tig00004373_pilon:27933..29453+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4022.t1 ID=Gchil4022.t1|Name=Gchil4022.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1521bp|location=Sequence derived from alignment at tig00004373_pilon:27933..29453+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATCCACAAGCAAGCGAATTCATCCCATCATGGCTTTCAAGCCCCTC
CCCCCAGCAACAGCTTCCCTCTCAGGCCAGGGGTTCGTGGGAAGACGAAG
AGCCCGCCCCCGCTTCCACCGAACCTGTTGTCGAGCAAATGGGCGCTGCT
AAGATCTCGGATATATCCGCCTCTCTAGCCCCGGAAAACCATTCCGAGAT
CAGTTCCGAGAACGAAAAGCCCACCAGCTCCCTCAGAAAGGATAAAGCAG
ATCCTTCACCCGAGGACGACCAAGGACTGAAAGCCATCGATGCCAAGGCG
GACGAGAGAGCTGACCCTAAAGCCGATTCAGAACCCGACGAAAACGAGTT
CGATTCATCTAATGTTGCTTTGGATGAGAAGAAGCCGTTAAATGTTGTAC
TTCTCGGTCATGTCGACGCGGGCAAGAGTACAATATCTGGCCATCTGCTT
GTGCTCACCGGTAATGTTGACGAGCGTACCATGGAAAAGTATGAAAAGGA
AGCAAAGGCTCTGAATCGCGAGAGCTGGAAGTTTGCGTTTGCGTTGGACA
CCTCCGAACAAGAGAGAGAGAAGGGGAAAACTGAAGAATGTGGTCAAGCA
AGCTTTACAACCGATACGCGGCGATTTACTATACTCGATGCTCCCGGTCA
TAAGAACTATGTCCCACATATGATAGGCGGCGCGTCGCAAGCAGATATTG
GGATTCTAGTCATTTCAGCCAGAAAAGGGGAGTTTGAAACCGGCTTCGAA
AGAGGGGGACAGACTAGGGAGCACGCTATGCTCGCGAAGACATCAGGTGT
TCGCCAGATGGTTGTGGTCGTCAACAAACTGGATGATCCAAGTGTTATCA
AGTCAGATGGATCTTGGAGTCAGGAGCGCTTCGAAGAATGCAAGATGAAG
CTCGAACCATATCTCAAGAATGTCGGTTGGAACTCGAAAGGCCTGGTTTG
GATTCCTGTTTCAGGTTTGACTGGGGACAACCTCAAGAACAAACCGTCTA
AAGGTACTTGTTCTTGGTACAATGGCGAGTCACTGCTTGTTACACTGGAG
CATTTGCGCCCGCCTGAGCGTCTTCTAAACGGACCAGTGAAGATGCCGAT
ATCAGAAAAGCACAAGGAAATGGGCACCATGATCATGGGCAAATTGGAAT
CTGGAGTTATTCAAGTAAATGATACTCTTGTTATGATGCCGAACCGTGTG
GAAGTTTTGGTTGATTCCGTTCAGCTAGAAGGATCCACGGCCCAAGCAGC
AGAGCCTGGCGATGTCGTTCGGCTTCGTTTGAAAGGAATCGATGAAGAGG
ATGTGAGAGTAGGCTTTGTGTTATGTTCACCCCGGAGTTTGGTTTCGTAT
ACAAGCACTTTCATTGCAAAGCTAATGATTCTAGAGCACAAGAGTATCAT
TTGTGCTGGCTATTCGGCTGTGATTCACCTCCATGCGGCTGTAGGAAGCG
TATTTGCCATGGTTGGAATGAGGTTTCAAACAGCTTTGAGTTTTATGGCG
GTGTACTCGCTGGTCTTATAA

Coding sequence (CDS) from alignment at tig00004373_pilon:27933..29453+

>Gchil4022.t1 ID=Gchil4022.t1|Name=Gchil4022.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1521bp|location=Sequence derived from alignment at tig00004373_pilon:27933..29453+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATCCACAAGCAAGCGAATTCATCCCATCATGGCTTTCAAGCCCCTC
CCCCCAGCAACAGCTTCCCTCTCAGGCCAGGGGTTCGTGGGAAGACGAAG
AGCCCGCCCCCGCTTCCACCGAACCTGTTGTCGAGCAAATGGGCGCTGCT
AAGATCTCGGATATATCCGCCTCTCTAGCCCCGGAAAACCATTCCGAGAT
CAGTTCCGAGAACGAAAAGCCCACCAGCTCCCTCAGAAAGGATAAAGCAG
ATCCTTCACCCGAGGACGACCAAGGACTGAAAGCCATCGATGCCAAGGCG
GACGAGAGAGCTGACCCTAAAGCCGATTCAGAACCCGACGAAAACGAGTT
CGATTCATCTAATGTTGCTTTGGATGAGAAGAAGCCGTTAAATGTTGTAC
TTCTCGGTCATGTCGACGCGGGCAAGAGTACAATATCTGGCCATCTGCTT
GTGCTCACCGGTAATGTTGACGAGCGTACCATGGAAAAGTATGAAAAGGA
AGCAAAGGCTCTGAATCGCGAGAGCTGGAAGTTTGCGTTTGCGTTGGACA
CCTCCGAACAAGAGAGAGAGAAGGGGAAAACTGAAGAATGTGGTCAAGCA
AGCTTTACAACCGATACGCGGCGATTTACTATACTCGATGCTCCCGGTCA
TAAGAACTATGTCCCACATATGATAGGCGGCGCGTCGCAAGCAGATATTG
GGATTCTAGTCATTTCAGCCAGAAAAGGGGAGTTTGAAACCGGCTTCGAA
AGAGGGGGACAGACTAGGGAGCACGCTATGCTCGCGAAGACATCAGGTGT
TCGCCAGATGGTTGTGGTCGTCAACAAACTGGATGATCCAAGTGTTATCA
AGTCAGATGGATCTTGGAGTCAGGAGCGCTTCGAAGAATGCAAGATGAAG
CTCGAACCATATCTCAAGAATGTCGGTTGGAACTCGAAAGGCCTGGTTTG
GATTCCTGTTTCAGGTTTGACTGGGGACAACCTCAAGAACAAACCGTCTA
AAGGTACTTGTTCTTGGTACAATGGCGAGTCACTGCTTGTTACACTGGAG
CATTTGCGCCCGCCTGAGCGTCTTCTAAACGGACCAGTGAAGATGCCGAT
ATCAGAAAAGCACAAGGAAATGGGCACCATGATCATGGGCAAATTGGAAT
CTGGAGTTATTCAAGTAAATGATACTCTTGTTATGATGCCGAACCGTGTG
GAAGTTTTGGTTGATTCCGTTCAGCTAGAAGGATCCACGGCCCAAGCAGC
AGAGCCTGGCGATGTCGTTCGGCTTCGTTTGAAAGGAATCGATGAAGAGG
ATGTGAGAGTAGGCTTTGTGTTATGTTCACCCCGGAGTTTGGTTTCGTAT
ACAAGCACTTTCATTGCAAAGCTAATGATTCTAGAGCACAAGAGTATCAT
TTGTGCTGGCTATTCGGCTGTGATTCACCTCCATGCGGCTGTAGGAAGCG
TATTTGCCATGGTTGGAATGAGGTTTCAAACAGCTTTGAGTTTTATGGCG
GTGTACTCGCTGGTCTTATAA