Gchil4016.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4016.t1
Unique NameGchil4016.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length231
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:511084..511776 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMF185CT
PFAMsAcyltransferase
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00037,RC00039
KEGG koko:K00655
KEGG ReactionR02241,R09381
KEGG Pathwayko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110
KEGG ModuleM00089
Evalue8.75e-64
EggNOG OGsCOG0204@1|root,KOG2848@2759|Eukaryota
EC2.3.1.51
Description1-acylglycerol-3-phosphate O-acyltransferase activity
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4016Gchil4016Gracilaria chilensis NLEC103_M9 malegenetig00000081_pilon 511084..511776 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4016.t1.stop1Gchil4016.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000081_pilon 511084..511086 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4016.t1.CDS1Gchil4016.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000081_pilon 511084..511776 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4016.t1.exon1Gchil4016.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000081_pilon 511084..511776 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4016.t1.start1Gchil4016.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000081_pilon 511774..511776 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4016.t1Gchil4016.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000081_pilon 511084..511776 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4016.t1 ID=Gchil4016.t1|Name=Gchil4016.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=231bp
MLLAHPLVLCFDAATRRFHDVIAMAWMKCSLASVRVSTRVVNAHLLPPPH
IPAVFVANHTSYLDIYVFAYLRRRIKYVSKAEIFRIPIVGWAMAMAGNIA
LRRMNRRGQMEAYRKMLHVLEYGLSLVIFPEGTRSRTGKLRRFKTGAFRA
AKANSVPVVPVTILGTRDAMPSWAWVPLRYPKQPFSLVVHPPLDSTALSV
EQLQQKAFEAIDSALPAQLQTFPDNRPPES*
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spliced messenger RNA

>Gchil4016.t1 ID=Gchil4016.t1|Name=Gchil4016.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=693bp|location=Sequence derived from alignment at tig00000081_pilon:511084..511776- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTACTGGCGCATCCGTTGGTGCTGTGCTTCGACGCCGCCACGCGCCG
TTTCCACGACGTCATCGCCATGGCCTGGATGAAGTGTTCGCTGGCGTCTG
TGCGCGTGTCCACGCGCGTCGTCAACGCCCATCTGCTGCCCCCGCCACAT
ATCCCGGCCGTCTTCGTTGCAAATCATACCTCGTACCTCGACATCTACGT
CTTTGCCTACCTGCGCCGCCGCATCAAGTACGTCTCCAAGGCCGAGATTT
TCCGCATTCCCATCGTCGGCTGGGCCATGGCCATGGCCGGTAACATCGCC
TTGCGTCGCATGAACCGCCGCGGCCAGATGGAAGCCTACCGCAAGATGCT
GCACGTCCTTGAATATGGCCTGTCGCTTGTTATCTTTCCGGAGGGAACGC
GCAGCCGCACCGGCAAGTTGCGCCGCTTCAAAACGGGCGCTTTTCGCGCC
GCAAAGGCCAATAGCGTCCCTGTCGTCCCCGTCACCATCCTCGGCACCAG
AGACGCCATGCCAAGCTGGGCCTGGGTCCCCTTGCGCTACCCGAAACAGC
CCTTTTCGCTTGTTGTCCACCCCCCGCTTGATAGCACCGCCCTCTCCGTT
GAGCAGTTGCAGCAGAAAGCCTTTGAGGCCATCGACTCGGCCCTGCCCGC
ACAGCTTCAAACTTTCCCCGACAACCGTCCACCGGAATCATAA
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protein sequence of Gchil4016.t1

>Gchil4016.t1 ID=Gchil4016.t1|Name=Gchil4016.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=231bp
MLLAHPLVLCFDAATRRFHDVIAMAWMKCSLASVRVSTRVVNAHLLPPPH
IPAVFVANHTSYLDIYVFAYLRRRIKYVSKAEIFRIPIVGWAMAMAGNIA
LRRMNRRGQMEAYRKMLHVLEYGLSLVIFPEGTRSRTGKLRRFKTGAFRA
AKANSVPVVPVTILGTRDAMPSWAWVPLRYPKQPFSLVVHPPLDSTALSV
EQLQQKAFEAIDSALPAQLQTFPDNRPPES*
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mRNA from alignment at tig00000081_pilon:511084..511776-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4016.t1 ID=Gchil4016.t1|Name=Gchil4016.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=693bp|location=Sequence derived from alignment at tig00000081_pilon:511084..511776- (Gracilaria chilensis NLEC103_M9 male)
ATGCTACTGGCGCATCCGTTGGTGCTGTGCTTCGACGCCGCCACGCGCCG
TTTCCACGACGTCATCGCCATGGCCTGGATGAAGTGTTCGCTGGCGTCTG
TGCGCGTGTCCACGCGCGTCGTCAACGCCCATCTGCTGCCCCCGCCACAT
ATCCCGGCCGTCTTCGTTGCAAATCATACCTCGTACCTCGACATCTACGT
CTTTGCCTACCTGCGCCGCCGCATCAAGTACGTCTCCAAGGCCGAGATTT
TCCGCATTCCCATCGTCGGCTGGGCCATGGCCATGGCCGGTAACATCGCC
TTGCGTCGCATGAACCGCCGCGGCCAGATGGAAGCCTACCGCAAGATGCT
GCACGTCCTTGAATATGGCCTGTCGCTTGTTATCTTTCCGGAGGGAACGC
GCAGCCGCACCGGCAAGTTGCGCCGCTTCAAAACGGGCGCTTTTCGCGCC
GCAAAGGCCAATAGCGTCCCTGTCGTCCCCGTCACCATCCTCGGCACCAG
AGACGCCATGCCAAGCTGGGCCTGGGTCCCCTTGCGCTACCCGAAACAGC
CCTTTTCGCTTGTTGTCCACCCCCCGCTTGATAGCACCGCCCTCTCCGTT
GAGCAGTTGCAGCAGAAAGCCTTTGAGGCCATCGACTCGGCCCTGCCCGC
ACAGCTTCAAACTTTCCCCGACAACCGTCCACCGGAATCATAA
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Coding sequence (CDS) from alignment at tig00000081_pilon:511084..511776-

>Gchil4016.t1 ID=Gchil4016.t1|Name=Gchil4016.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=693bp|location=Sequence derived from alignment at tig00000081_pilon:511084..511776- (Gracilaria chilensis NLEC103_M9 male)
ATGCTACTGGCGCATCCGTTGGTGCTGTGCTTCGACGCCGCCACGCGCCG
TTTCCACGACGTCATCGCCATGGCCTGGATGAAGTGTTCGCTGGCGTCTG
TGCGCGTGTCCACGCGCGTCGTCAACGCCCATCTGCTGCCCCCGCCACAT
ATCCCGGCCGTCTTCGTTGCAAATCATACCTCGTACCTCGACATCTACGT
CTTTGCCTACCTGCGCCGCCGCATCAAGTACGTCTCCAAGGCCGAGATTT
TCCGCATTCCCATCGTCGGCTGGGCCATGGCCATGGCCGGTAACATCGCC
TTGCGTCGCATGAACCGCCGCGGCCAGATGGAAGCCTACCGCAAGATGCT
GCACGTCCTTGAATATGGCCTGTCGCTTGTTATCTTTCCGGAGGGAACGC
GCAGCCGCACCGGCAAGTTGCGCCGCTTCAAAACGGGCGCTTTTCGCGCC
GCAAAGGCCAATAGCGTCCCTGTCGTCCCCGTCACCATCCTCGGCACCAG
AGACGCCATGCCAAGCTGGGCCTGGGTCCCCTTGCGCTACCCGAAACAGC
CCTTTTCGCTTGTTGTCCACCCCCCGCTTGATAGCACCGCCCTCTCCGTT
GAGCAGTTGCAGCAGAAAGCCTTTGAGGCCATCGACTCGGCCCTGCCCGC
ACAGCTTCAAACTTTCCCCGACAACCGTCCACCGGAATCATAA
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