Gchil4014.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4014.t1
Unique Name	Gchil4014.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	343

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000081_pilon	contig	tig00000081_pilon:507879..508907 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3218.PP1S27_307V6.1
PFAMs	Mito_carr
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K15111,ko:K15113
KEGG TC	2.A.29.18,2.A.29.5
Evalue	7.92e-44
EggNOG OGs	KOG0764@1\|root,KOG0768@1\|root,KOG0764@2759\|Eukaryota,KOG0768@2759\|Eukaryota,37QVN@33090\|Viridiplantae,3GFBE@35493\|Streptophyta
Description	Belongs to the mitochondrial carrier (TC 2.A.29) family
COG category	C
BRITE	ko00000,ko02000,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4014	Gchil4014	Gracilaria chilensis NLEC103_M9 male	gene	tig00000081_pilon 507879..508907 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4014.t1.start1	Gchil4014.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000081_pilon 507879..507881 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4014.t1.CDS1	Gchil4014.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000081_pilon 507879..508907 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4014.t1.exon1	Gchil4014.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000081_pilon 507879..508907 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4014.t1.stop1	Gchil4014.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000081_pilon 508905..508907 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4014.t1	Gchil4014.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000081_pilon 507879..508907 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000081_pilon:507879..508907+
coding sequence from alignment at tig00000081_pilon:507879..508907+

mRNA sequence

>Gchil4014.t1 ID=Gchil4014.t1|Name=Gchil4014.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=343bp
MHLPQRKRARGPSAFAPAVGVKGASPASASSEPQTPVKPSPKPPSSKSQS
LPFKSAALHLLSGGLSAGLVRASLQPLDTCKTRLQAAHLPQYTFRSVSNL
LFSDGVPGLYRGVIPGIVGIVPAAAIYMLTFQTLKKSLSRRFPARARDVV
VASSAALGDVAASLVRVPCEVLKQRLQVGIYPNVAHALRASFSAPLPKMY
SGLSAQLARDVPYAAVEFVVYENLKERFKSDGRMVKRARSHSLIVGGVSG
AIAAVISNPLDVVKTRLMTQTSTSAVRYRGVAHALTTVASQEGLSAFAKG
IAPRIAAKTLQSALFFAAYEQVKATLGQMLGVGPKVATDSGL*

spliced messenger RNA

>Gchil4014.t1 ID=Gchil4014.t1|Name=Gchil4014.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1029bp|location=Sequence derived from alignment at tig00000081_pilon:507879..508907+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCTTCCTCAGCGAAAGCGAGCACGCGGACCGAGCGCCTTTGCTCC
TGCTGTCGGCGTCAAAGGCGCCTCACCTGCAAGCGCCTCCTCAGAGCCAC
AAACTCCAGTCAAACCGTCTCCCAAACCGCCCTCGTCAAAGTCCCAATCG
CTGCCGTTCAAGTCCGCGGCTCTCCACCTTCTAAGCGGCGGTCTGTCGGC
AGGACTTGTGCGGGCTTCTCTTCAACCCCTTGATACCTGTAAGACACGAC
TACAGGCTGCACATCTGCCACAATATACCTTCCGGTCTGTCTCCAACCTT
CTGTTTTCAGATGGTGTGCCCGGGTTGTATCGAGGCGTGATCCCTGGCAT
TGTAGGGATTGTGCCGGCTGCCGCCATTTACATGCTCACCTTTCAGACTT
TAAAGAAATCGCTTTCTAGACGCTTTCCGGCCCGCGCCAGAGATGTTGTC
GTCGCTTCTTCGGCTGCGCTGGGCGATGTGGCTGCCTCACTCGTGCGGGT
TCCTTGCGAGGTGTTGAAACAAAGACTACAGGTTGGTATCTATCCAAACG
TCGCCCATGCTTTGCGAGCTTCTTTTTCTGCCCCGCTGCCGAAAATGTAC
TCTGGATTATCGGCGCAACTGGCCAGGGACGTCCCTTATGCTGCCGTTGA
ATTTGTCGTGTACGAGAACTTGAAAGAGCGGTTCAAGTCGGATGGGCGAA
TGGTCAAACGTGCTCGATCCCACTCCCTCATCGTAGGCGGTGTTTCCGGT
GCAATCGCTGCTGTCATCTCCAACCCCCTGGATGTGGTTAAGACACGTCT
GATGACCCAAACATCAACGTCTGCCGTTCGGTACCGCGGCGTTGCACACG
CCTTAACCACCGTCGCGTCCCAGGAGGGTTTAAGCGCGTTTGCCAAGGGT
ATTGCGCCAAGAATTGCTGCCAAGACATTGCAAAGCGCCTTGTTTTTCGC
TGCGTATGAACAGGTCAAGGCTACCCTAGGACAGATGCTCGGTGTGGGCC
CCAAGGTTGCCACCGATAGCGGTTTGTAG

protein sequence of Gchil4014.t1

>Gchil4014.t1 ID=Gchil4014.t1|Name=Gchil4014.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=343bp
MHLPQRKRARGPSAFAPAVGVKGASPASASSEPQTPVKPSPKPPSSKSQS
LPFKSAALHLLSGGLSAGLVRASLQPLDTCKTRLQAAHLPQYTFRSVSNL
LFSDGVPGLYRGVIPGIVGIVPAAAIYMLTFQTLKKSLSRRFPARARDVV
VASSAALGDVAASLVRVPCEVLKQRLQVGIYPNVAHALRASFSAPLPKMY
SGLSAQLARDVPYAAVEFVVYENLKERFKSDGRMVKRARSHSLIVGGVSG
AIAAVISNPLDVVKTRLMTQTSTSAVRYRGVAHALTTVASQEGLSAFAKG
IAPRIAAKTLQSALFFAAYEQVKATLGQMLGVGPKVATDSGL*

mRNA from alignment at tig00000081_pilon:507879..508907+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4014.t1 ID=Gchil4014.t1|Name=Gchil4014.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1029bp|location=Sequence derived from alignment at tig00000081_pilon:507879..508907+ (Gracilaria chilensis NLEC103_M9 male)
ATGCATCTTCCTCAGCGAAAGCGAGCACGCGGACCGAGCGCCTTTGCTCC
TGCTGTCGGCGTCAAAGGCGCCTCACCTGCAAGCGCCTCCTCAGAGCCAC
AAACTCCAGTCAAACCGTCTCCCAAACCGCCCTCGTCAAAGTCCCAATCG
CTGCCGTTCAAGTCCGCGGCTCTCCACCTTCTAAGCGGCGGTCTGTCGGC
AGGACTTGTGCGGGCTTCTCTTCAACCCCTTGATACCTGTAAGACACGAC
TACAGGCTGCACATCTGCCACAATATACCTTCCGGTCTGTCTCCAACCTT
CTGTTTTCAGATGGTGTGCCCGGGTTGTATCGAGGCGTGATCCCTGGCAT
TGTAGGGATTGTGCCGGCTGCCGCCATTTACATGCTCACCTTTCAGACTT
TAAAGAAATCGCTTTCTAGACGCTTTCCGGCCCGCGCCAGAGATGTTGTC
GTCGCTTCTTCGGCTGCGCTGGGCGATGTGGCTGCCTCACTCGTGCGGGT
TCCTTGCGAGGTGTTGAAACAAAGACTACAGGTTGGTATCTATCCAAACG
TCGCCCATGCTTTGCGAGCTTCTTTTTCTGCCCCGCTGCCGAAAATGTAC
TCTGGATTATCGGCGCAACTGGCCAGGGACGTCCCTTATGCTGCCGTTGA
ATTTGTCGTGTACGAGAACTTGAAAGAGCGGTTCAAGTCGGATGGGCGAA
TGGTCAAACGTGCTCGATCCCACTCCCTCATCGTAGGCGGTGTTTCCGGT
GCAATCGCTGCTGTCATCTCCAACCCCCTGGATGTGGTTAAGACACGTCT
GATGACCCAAACATCAACGTCTGCCGTTCGGTACCGCGGCGTTGCACACG
CCTTAACCACCGTCGCGTCCCAGGAGGGTTTAAGCGCGTTTGCCAAGGGT
ATTGCGCCAAGAATTGCTGCCAAGACATTGCAAAGCGCCTTGTTTTTCGC
TGCGTATGAACAGGTCAAGGCTACCCTAGGACAGATGCTCGGTGTGGGCC
CCAAGGTTGCCACCGATAGCGGTTTGTAG

Coding sequence (CDS) from alignment at tig00000081_pilon:507879..508907+

>Gchil4014.t1 ID=Gchil4014.t1|Name=Gchil4014.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1029bp|location=Sequence derived from alignment at tig00000081_pilon:507879..508907+ (Gracilaria chilensis NLEC103_M9 male)
ATGCATCTTCCTCAGCGAAAGCGAGCACGCGGACCGAGCGCCTTTGCTCC
TGCTGTCGGCGTCAAAGGCGCCTCACCTGCAAGCGCCTCCTCAGAGCCAC
AAACTCCAGTCAAACCGTCTCCCAAACCGCCCTCGTCAAAGTCCCAATCG
CTGCCGTTCAAGTCCGCGGCTCTCCACCTTCTAAGCGGCGGTCTGTCGGC
AGGACTTGTGCGGGCTTCTCTTCAACCCCTTGATACCTGTAAGACACGAC
TACAGGCTGCACATCTGCCACAATATACCTTCCGGTCTGTCTCCAACCTT
CTGTTTTCAGATGGTGTGCCCGGGTTGTATCGAGGCGTGATCCCTGGCAT
TGTAGGGATTGTGCCGGCTGCCGCCATTTACATGCTCACCTTTCAGACTT
TAAAGAAATCGCTTTCTAGACGCTTTCCGGCCCGCGCCAGAGATGTTGTC
GTCGCTTCTTCGGCTGCGCTGGGCGATGTGGCTGCCTCACTCGTGCGGGT
TCCTTGCGAGGTGTTGAAACAAAGACTACAGGTTGGTATCTATCCAAACG
TCGCCCATGCTTTGCGAGCTTCTTTTTCTGCCCCGCTGCCGAAAATGTAC
TCTGGATTATCGGCGCAACTGGCCAGGGACGTCCCTTATGCTGCCGTTGA
ATTTGTCGTGTACGAGAACTTGAAAGAGCGGTTCAAGTCGGATGGGCGAA
TGGTCAAACGTGCTCGATCCCACTCCCTCATCGTAGGCGGTGTTTCCGGT
GCAATCGCTGCTGTCATCTCCAACCCCCTGGATGTGGTTAAGACACGTCT
GATGACCCAAACATCAACGTCTGCCGTTCGGTACCGCGGCGTTGCACACG
CCTTAACCACCGTCGCGTCCCAGGAGGGTTTAAGCGCGTTTGCCAAGGGT
ATTGCGCCAAGAATTGCTGCCAAGACATTGCAAAGCGCCTTGTTTTTCGC
TGCGTATGAACAGGTCAAGGCTACCCTAGGACAGATGCTCGGTGTGGGCC
CCAAGGTTGCCACCGATAGCGGTTTGTAG