Gchil4012.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4012.t1
Unique Name	Gchil4012.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	164

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000081_pilon	contig	tig00000081_pilon:461044..461535 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4432.XP_010245540.1
Preferred name	MCM5
PFAMs	MCM,MCM_N,MCM_OB,Mg_chelatase
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K02209,ko:K11592
KEGG Pathway	ko03030,ko04110,ko04111,ko04113,ko05206,map03030,map04110,map04111,map04113,map05206
KEGG Module	M00285
GOs	GO:0000347,GO:0000785,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006275,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010556,GO:0016043,GO:0019219,GO:0019222,GO:0030174,GO:0031323,GO:0031326,GO:0032392,GO:0032508,GO:0032991,GO:0034641,GO:0034645,GO:0042555,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051052,GO:0051171,GO:0051276,GO:0060255,GO:0065007,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:1901360,GO:1901576,GO:2000112
Evalue	6.78e-08
EggNOG OGs	COG1241@1\|root,KOG0481@2759\|Eukaryota,37PI3@33090\|Viridiplantae,3GBU6@35493\|Streptophyta
EC	3.6.4.12
Description	Belongs to the MCM family
COG category	L
BRITE	ko00000,ko00001,ko00002,ko01000,ko03032,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4012	Gchil4012	Gracilaria chilensis NLEC103_M9 male	gene	tig00000081_pilon 461044..461535 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4012.t1.start1	Gchil4012.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000081_pilon 461044..461046 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4012.t1.CDS1	Gchil4012.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000081_pilon 461044..461535 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4012.t1.exon1	Gchil4012.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000081_pilon 461044..461535 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4012.t1.stop1	Gchil4012.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000081_pilon 461533..461535 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4012.t1	Gchil4012.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000081_pilon 461044..461535 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000081_pilon:461044..461535+
coding sequence from alignment at tig00000081_pilon:461044..461535+

mRNA sequence

>Gchil4012.t1 ID=Gchil4012.t1|Name=Gchil4012.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=164bp
MAHRHRSKSLLDAACFRQPLIGCLSFLFTSALFPPPMCPRYWPRQVLSSP
PQKYAAKVLRWSCAVAIAMRKITVPVNPELGGFAVPRACRRTVENDETPC
PLDPYVVLPDESKFMGSQTQATRVARIRAHRRNAKEHRFELRSLCHGCGQ
VILGVKNDGATSV*

spliced messenger RNA

>Gchil4012.t1 ID=Gchil4012.t1|Name=Gchil4012.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=492bp|location=Sequence derived from alignment at tig00000081_pilon:461044..461535+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCATCGCCATCGATCAAAGTCGCTCCTGGACGCTGCATGCTTTCG
ACAGCCGCTTATTGGCTGTCTCTCATTTCTGTTCACGTCCGCGCTCTTTC
CTCCTCCGATGTGTCCAAGGTATTGGCCACGTCAGGTATTGTCATCGCCG
CCTCAAAAGTACGCTGCAAAAGTACTGCGGTGGTCATGCGCTGTCGCAAT
TGCAATGAGGAAGATCACTGTGCCAGTGAATCCCGAACTCGGAGGGTTTG
CAGTGCCAAGAGCCTGTCGCCGCACAGTCGAGAATGATGAAACTCCATGT
CCACTCGACCCGTACGTGGTCCTGCCAGATGAGAGCAAATTCATGGGCAG
TCAAACTCAAGCTACACGAGTTGCCCGAATCCGTGCCCACCGGAGAAATG
CCAAGGAGCATCGCTTTGAGCTGCGATCGCTATGTCACGGATGCGGTCAG
GTCATTCTTGGTGTGAAGAACGACGGGGCAACAAGCGTATGA

protein sequence of Gchil4012.t1

>Gchil4012.t1 ID=Gchil4012.t1|Name=Gchil4012.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=164bp
MAHRHRSKSLLDAACFRQPLIGCLSFLFTSALFPPPMCPRYWPRQVLSSP
PQKYAAKVLRWSCAVAIAMRKITVPVNPELGGFAVPRACRRTVENDETPC
PLDPYVVLPDESKFMGSQTQATRVARIRAHRRNAKEHRFELRSLCHGCGQ
VILGVKNDGATSV*

mRNA from alignment at tig00000081_pilon:461044..461535+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4012.t1 ID=Gchil4012.t1|Name=Gchil4012.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=492bp|location=Sequence derived from alignment at tig00000081_pilon:461044..461535+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCCATCGCCATCGATCAAAGTCGCTCCTGGACGCTGCATGCTTTCG
ACAGCCGCTTATTGGCTGTCTCTCATTTCTGTTCACGTCCGCGCTCTTTC
CTCCTCCGATGTGTCCAAGGTATTGGCCACGTCAGGTATTGTCATCGCCG
CCTCAAAAGTACGCTGCAAAAGTACTGCGGTGGTCATGCGCTGTCGCAAT
TGCAATGAGGAAGATCACTGTGCCAGTGAATCCCGAACTCGGAGGGTTTG
CAGTGCCAAGAGCCTGTCGCCGCACAGTCGAGAATGATGAAACTCCATGT
CCACTCGACCCGTACGTGGTCCTGCCAGATGAGAGCAAATTCATGGGCAG
TCAAACTCAAGCTACACGAGTTGCCCGAATCCGTGCCCACCGGAGAAATG
CCAAGGAGCATCGCTTTGAGCTGCGATCGCTATGTCACGGATGCGGTCAG
GTCATTCTTGGTGTGAAGAACGACGGGGCAACAAGCGTATGA

Coding sequence (CDS) from alignment at tig00000081_pilon:461044..461535+

>Gchil4012.t1 ID=Gchil4012.t1|Name=Gchil4012.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=492bp|location=Sequence derived from alignment at tig00000081_pilon:461044..461535+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCCATCGCCATCGATCAAAGTCGCTCCTGGACGCTGCATGCTTTCG
ACAGCCGCTTATTGGCTGTCTCTCATTTCTGTTCACGTCCGCGCTCTTTC
CTCCTCCGATGTGTCCAAGGTATTGGCCACGTCAGGTATTGTCATCGCCG
CCTCAAAAGTACGCTGCAAAAGTACTGCGGTGGTCATGCGCTGTCGCAAT
TGCAATGAGGAAGATCACTGTGCCAGTGAATCCCGAACTCGGAGGGTTTG
CAGTGCCAAGAGCCTGTCGCCGCACAGTCGAGAATGATGAAACTCCATGT
CCACTCGACCCGTACGTGGTCCTGCCAGATGAGAGCAAATTCATGGGCAG
TCAAACTCAAGCTACACGAGTTGCCCGAATCCGTGCCCACCGGAGAAATG
CCAAGGAGCATCGCTTTGAGCTGCGATCGCTATGTCACGGATGCGGTCAG
GTCATTCTTGGTGTGAAGAACGACGGGGCAACAAGCGTATGA