Gchil3985.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3985.t1
Unique NameGchil3985.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length246
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:46827..47678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3985Gchil3985Gracilaria chilensis NLEC103_M9 malegenetig00000081_pilon 46827..47678 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3985.t1Gchil3985.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000081_pilon 46827..47678 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3985.t1.stop1Gchil3985.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000081_pilon 46827..46829 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3985.t1.CDS1Gchil3985.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000081_pilon 46827..47261 -
Gchil3985.t1.CDS2Gchil3985.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000081_pilon 47376..47678 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3985.t1.exon1Gchil3985.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000081_pilon 46827..47261 -
Gchil3985.t1.exon2Gchil3985.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000081_pilon 47376..47678 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3985.t1.intron1Gchil3985.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000081_pilon 47262..47375 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3985.t1.start1Gchil3985.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000081_pilon 47676..47678 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3985.t1 ID=Gchil3985.t1|Name=Gchil3985.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=246bp
MAMVGTNYRLAPSDFAFLWEQCERCFYFKVHGVLPRPRAPFPSIFSSIDL
GMKRHMSGLRTNELFQAMRPGTILCEDDDPWIESLPLTPPGESHNVYIRG
KIDALVRFDDGTYGVIDFKTSSVSSKSATYARQLHAYATALENPSDNSQL
EKASVSELGLVVYTPSEFHTPLDKDGTIQAAMTGCIQYIRIDRDDSGFLK
FLAQVVKVLDMPEAPPPKLATGRNYSSCSYCNYLHNAHKKGLLPV*
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spliced messenger RNA

>Gchil3985.t1 ID=Gchil3985.t1|Name=Gchil3985.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=738bp|location=Sequence derived from alignment at tig00000081_pilon:46827..47678- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCATGGTCGGAACGAATTATCGTCTTGCGCCGTCGGACTTCGCATT
CCTGTGGGAACAATGCGAGCGATGTTTCTACTTCAAAGTCCACGGGGTTT
TACCCCGCCCGCGAGCTCCGTTTCCGTCAATATTTTCCTCAATTGACCTT
GGTATGAAGCGGCACATGAGTGGTTTGCGAACAAACGAACTCTTTCAGGC
AATGCGTCCTGGTACTATCTTATGCGAAGATGATGACCCCTGGATTGAAA
GTCTACCTTTAACACCACCAGGTGAGAGCCATAACGTGTATATTCGCGGA
AAGATTGATGCTTTAGTGCGCTTCGATGACGGCACATATGGAGTAATTGA
CTTCAAGACGTCGTCTGTCTCAAGCAAGTCCGCTACCTATGCTCGGCAAC
TCCATGCATATGCCACGGCTTTAGAGAATCCTTCCGATAATTCTCAGCTG
GAGAAAGCTTCCGTTTCGGAGCTTGGGTTGGTAGTGTATACACCGTCCGA
GTTTCATACACCATTGGACAAAGACGGAACGATACAAGCAGCAATGACGG
GGTGTATCCAATATATAAGAATTGACCGTGATGACTCCGGATTTCTTAAA
TTTCTTGCACAGGTTGTGAAGGTACTTGACATGCCTGAAGCGCCTCCCCC
GAAGCTGGCTACGGGACGGAATTACTCGAGTTGTTCATATTGCAACTATT
TGCACAATGCACACAAAAAAGGGCTGTTGCCTGTATAG
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protein sequence of Gchil3985.t1

>Gchil3985.t1 ID=Gchil3985.t1|Name=Gchil3985.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=246bp
MAMVGTNYRLAPSDFAFLWEQCERCFYFKVHGVLPRPRAPFPSIFSSIDL
GMKRHMSGLRTNELFQAMRPGTILCEDDDPWIESLPLTPPGESHNVYIRG
KIDALVRFDDGTYGVIDFKTSSVSSKSATYARQLHAYATALENPSDNSQL
EKASVSELGLVVYTPSEFHTPLDKDGTIQAAMTGCIQYIRIDRDDSGFLK
FLAQVVKVLDMPEAPPPKLATGRNYSSCSYCNYLHNAHKKGLLPV*
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mRNA from alignment at tig00000081_pilon:46827..47678-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3985.t1 ID=Gchil3985.t1|Name=Gchil3985.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=852bp|location=Sequence derived from alignment at tig00000081_pilon:46827..47678- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCATGGTCGGAACGAATTATCGTCTTGCGCCGTCGGACTTCGCATT
CCTGTGGGAACAATGCGAGCGATGTTTCTACTTCAAAGTCCACGGGGTTT
TACCCCGCCCGCGAGCTCCGTTTCCGTCAATATTTTCCTCAATTGACCTT
GGTATGAAGCGGCACATGAGTGGTTTGCGAACAAACGAACTCTTTCAGGC
AATGCGTCCTGGTACTATCTTATGCGAAGATGATGACCCCTGGATTGAAA
GTCTACCTTTAACACCACCAGGTGAGAGCCATAACGTGTATATTCGCGGA
AAGGTATGTTTACTTTGCTACACACTCCAGATGCTTAACCCACAAGTGTG
TTGGTCGGCAACACAGTTGCTTTGCTCCATATTCGGGATTTCTGACCATG
ATCATGTTGCTCAACAGATTGATGCTTTAGTGCGCTTCGATGACGGCACA
TATGGAGTAATTGACTTCAAGACGTCGTCTGTCTCAAGCAAGTCCGCTAC
CTATGCTCGGCAACTCCATGCATATGCCACGGCTTTAGAGAATCCTTCCG
ATAATTCTCAGCTGGAGAAAGCTTCCGTTTCGGAGCTTGGGTTGGTAGTG
TATACACCGTCCGAGTTTCATACACCATTGGACAAAGACGGAACGATACA
AGCAGCAATGACGGGGTGTATCCAATATATAAGAATTGACCGTGATGACT
CCGGATTTCTTAAATTTCTTGCACAGGTTGTGAAGGTACTTGACATGCCT
GAAGCGCCTCCCCCGAAGCTGGCTACGGGACGGAATTACTCGAGTTGTTC
ATATTGCAACTATTTGCACAATGCACACAAAAAAGGGCTGTTGCCTGTAT
AG
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Coding sequence (CDS) from alignment at tig00000081_pilon:46827..47678-

>Gchil3985.t1 ID=Gchil3985.t1|Name=Gchil3985.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=738bp|location=Sequence derived from alignment at tig00000081_pilon:46827..47678- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCATGGTCGGAACGAATTATCGTCTTGCGCCGTCGGACTTCGCATT
CCTGTGGGAACAATGCGAGCGATGTTTCTACTTCAAAGTCCACGGGGTTT
TACCCCGCCCGCGAGCTCCGTTTCCGTCAATATTTTCCTCAATTGACCTT
GGTATGAAGCGGCACATGAGTGGTTTGCGAACAAACGAACTCTTTCAGGC
AATGCGTCCTGGTACTATCTTATGCGAAGATGATGACCCCTGGATTGAAA
GTCTACCTTTAACACCACCAGGTGAGAGCCATAACGTGTATATTCGCGGA
AAGATTGATGCTTTAGTGCGCTTCGATGACGGCACATATGGAGTAATTGA
CTTCAAGACGTCGTCTGTCTCAAGCAAGTCCGCTACCTATGCTCGGCAAC
TCCATGCATATGCCACGGCTTTAGAGAATCCTTCCGATAATTCTCAGCTG
GAGAAAGCTTCCGTTTCGGAGCTTGGGTTGGTAGTGTATACACCGTCCGA
GTTTCATACACCATTGGACAAAGACGGAACGATACAAGCAGCAATGACGG
GGTGTATCCAATATATAAGAATTGACCGTGATGACTCCGGATTTCTTAAA
TTTCTTGCACAGGTTGTGAAGGTACTTGACATGCCTGAAGCGCCTCCCCC
GAAGCTGGCTACGGGACGGAATTACTCGAGTTGTTCATATTGCAACTATT
TGCACAATGCACACAAAAAAGGGCTGTTGCCTGTATAG
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