Gchil3953.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3953.t1
Unique Name	Gchil3953.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	692

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000010_pilon	contig	tig00000010_pilon:1709624..1711699 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3953	Gchil3953	Gracilaria chilensis NLEC103_M9 male	gene	tig00000010_pilon 1709624..1711699 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3953.t1.start1	Gchil3953.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000010_pilon 1709624..1709626 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3953.t1.CDS1	Gchil3953.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000010_pilon 1709624..1711699 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3953.t1.exon1	Gchil3953.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000010_pilon 1709624..1711699 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3953.t1.stop1	Gchil3953.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000010_pilon 1711697..1711699 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3953.t1	Gchil3953.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000010_pilon 1709624..1711699 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000010_pilon:1709624..1711699+
coding sequence from alignment at tig00000010_pilon:1709624..1711699+

mRNA sequence

>Gchil3953.t1 ID=Gchil3953.t1|Name=Gchil3953.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=692bp
MAAATRTASWPPSNSSSSHISFHKRELADAHDDANLPNDTPHTDPTISRA
SQLMSQALNVQARLSSHPAPNHHLPTLHSQFPQHHGEQQQQQQHDDDDDD
DDDDDDDDDDYDEDDDGGDEQQLQLHHRPIQAPDPHLSPSRLPSEQQHPP
PANHHSKSKLNSLKSNGQYQTQSPQQTQQTQQTHQSKTDSDTHDQLAEFH
QTMPTHNLARTLPSRSTATIASNLNRCTASQAASRASQSSHASFVFSEAW
YDQMCIEAIPLRHRIPPDVTHPSFFRVMCGRHNALFPPEPAANTVNTHTA
EANVLYQVLAFLHENLNQLFDMFGDLLELDGVEPSDPALVQLRSSWKHLR
GITEMLECRYDLLCGYRHRDYRQTALVEAHMTPALGHSALSQAVNDDMRG
VPSDTPQAPAETREKMLYNEFSCKAGDEQQGSNEEKAPGQSVETIKSKSL
LPRKKKNLTVSWADRQAPSIEFVFVLRRYDMINASVVRGAWHEFGGYLWR
LIIYPRKEKGLEGFMWLYLQCGGSCFDGEDDDGDENGGNEDAEEEEEEGR
TEANEVDEQEEDECEDECEDEREDGDRVSWCRPTQFVMRIVHSTAPLARA
AVRSGRVMFDSVETLEQSKWYNESDEASLYPDIKRQEYHVFRSTADDWGY
GIVRFCALQPGLYADNDMNVVFTVRIMLLSFEQPLPRRDSV*

spliced messenger RNA

>Gchil3953.t1 ID=Gchil3953.t1|Name=Gchil3953.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2076bp|location=Sequence derived from alignment at tig00000010_pilon:1709624..1711699+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCCGCTACGCGAACCGCCTCATGGCCACCTTCTAATTCTTCCTC
CTCCCATATTTCGTTTCATAAGCGTGAGTTGGCTGACGCCCATGATGACG
CCAACTTGCCCAATGACACCCCGCACACCGACCCCACAATCAGCCGTGCT
TCGCAGCTCATGTCCCAAGCCCTCAACGTCCAAGCGCGCCTTTCTTCTCA
TCCCGCCCCCAACCACCATCTGCCCACTCTTCATTCTCAGTTCCCCCAAC
ACCACGGCGaacaacaacaacaacaacaacacgacgacgacgacgacgac
gacgacgacgacgacgacgacgacgacgactacgacgaagacgacgacgg
cggcgacgaACAGCAGCTTCAGCTCCACCACCGCCCCATCCAAGCCCCTG
ATCCCCATTTGTCACCATCGCGTTTACCCAGCGAACAGCAACACCCGCCC
CCCGCCAATCACCACTCCAAATCGAAACTAAACTCACTCAAATCGAACGG
ACAATATCAAACGCAATCACCACAACAAACCCAACAAACCCAACAAACCC
ACCAAAGCAAAACCGACAGTGACACTCACGACCAGCTCGCCGAATTCCAC
CAAACAATGCCTACCCATAATTTGGCCCGCACCCTTCCAAGTCGCTCCAC
CGCCACCATCGCTTCCAATCTGAACCGATGCACTGCTTCACAAGCGGCCT
CGCGCGCATCGCAATCATCGCACGCCTCTTTTGTCTTCTCCGAAGCATGG
TACGATCAAATGTGTATAGAGGCCATCCCGCTTCGCCACCGCATCCCCCC
AGATGTCACCCATCCATCGTTCTTTCGTGTCATGTGTGGCCGACACAACG
CTCTATTTCCGCCGGAGCCCGCCGCTAATACCGTCAACACGCACACCGCT
GAAGCCAACGTGCTGTACCAGGTGCTTGCCTTTCTTCATGAAAACCTCAA
CCAACTCTTCGATATGTTTGGCGATTTATTGGAGCTTGACGGTGTGGAAC
CCTCTGATCCCGCTCTGGTGCAACTGCGCTCCAGTTGGAAACATTTGCGC
GGCATCACCGAAATGTTGGAATGTCGCTACGATTTGCTATGCGGCTACAG
ACATCGCGACTACCGACAAACTGCTCTTGTGGAGGCACACATGACTCCAG
CGCTGGGGCACAGCGCACTCTCACAGGCTGTTAATGACGACATGCGCGGC
GTCCCTTCTGACACACCACAAGCGCCGGCTGAAACTCGTGAGAAAATGTT
GTACAACGAATTCAGCTGCAAGGCTGGCGACGAGCAACAAGGCAGTAATG
AAGAAAAGGCGCCTGGTCAATCAGTTGAAACCATCAAAAGCAAATCACTT
TTGCCTAGAAAGAAAAAAAATCTCACCGTGTCTTGGGCTGATCGACAAGC
GCCGAGCATTGAGTTTGTGTTTGTTCTAAGAAGATATGACATGATTAACG
CCTCCGTCGTTCGCGGTGCGTGGCACGAGTTTGGCGGCTACTTGTGGAGA
CTGATTATTTACCCGCGCAAAGAGAAAGGACTAGAAGGATTCATGTGGCT
CTATTTACAATGCGGGGGTTCTTGTTTCGATGGTGAAGACGACGATGGGG
ATGAGAATGGGGGGAATGAAGATGCAGAGGAAGAGGAGGAGGAAGGCAGG
ACTGAGGCGAATGAAGTGGATGAGCAGGAGGAAGATGAGTGCGAAGATGA
GTGCGAAGATGAGCGCGAAGATGGGGACCGCGTTTCGTGGTGCAGACCAA
CACAGTTTGTGATGCGCATCGTACACTCCACGGCGCCGCTCGCTCGAGCG
GCTGTGCGGTCAGGTCGCGTGATGTTTGATAGCGTAGAGACTTTGGAGCA
GTCCAAATGGTACAATGAGTCGGATGAGGCGTCGCTGTACCCGGACATCA
AACGGCAAGAGTACCACGTGTTTCGTAGCACAGCTGACGATTGGGGCTAC
GGTATTGTTCGGTTTTGTGCGCTGCAACCTGGCTTGTACGCGGACAACGA
TATGAATGTGGTGTTCACGGTTCGAATCATGCTGTTGTCGTTCGAGCAGC
CGCTACCTCGTCGCGACAGCGTGTGA

protein sequence of Gchil3953.t1

>Gchil3953.t1 ID=Gchil3953.t1|Name=Gchil3953.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=692bp
MAAATRTASWPPSNSSSSHISFHKRELADAHDDANLPNDTPHTDPTISRA
SQLMSQALNVQARLSSHPAPNHHLPTLHSQFPQHHGEQQQQQQHDDDDDD
DDDDDDDDDDYDEDDDGGDEQQLQLHHRPIQAPDPHLSPSRLPSEQQHPP
PANHHSKSKLNSLKSNGQYQTQSPQQTQQTQQTHQSKTDSDTHDQLAEFH
QTMPTHNLARTLPSRSTATIASNLNRCTASQAASRASQSSHASFVFSEAW
YDQMCIEAIPLRHRIPPDVTHPSFFRVMCGRHNALFPPEPAANTVNTHTA
EANVLYQVLAFLHENLNQLFDMFGDLLELDGVEPSDPALVQLRSSWKHLR
GITEMLECRYDLLCGYRHRDYRQTALVEAHMTPALGHSALSQAVNDDMRG
VPSDTPQAPAETREKMLYNEFSCKAGDEQQGSNEEKAPGQSVETIKSKSL
LPRKKKNLTVSWADRQAPSIEFVFVLRRYDMINASVVRGAWHEFGGYLWR
LIIYPRKEKGLEGFMWLYLQCGGSCFDGEDDDGDENGGNEDAEEEEEEGR
TEANEVDEQEEDECEDECEDEREDGDRVSWCRPTQFVMRIVHSTAPLARA
AVRSGRVMFDSVETLEQSKWYNESDEASLYPDIKRQEYHVFRSTADDWGY
GIVRFCALQPGLYADNDMNVVFTVRIMLLSFEQPLPRRDSV*

mRNA from alignment at tig00000010_pilon:1709624..1711699+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3953.t1 ID=Gchil3953.t1|Name=Gchil3953.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2076bp|location=Sequence derived from alignment at tig00000010_pilon:1709624..1711699+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGCCGCTACGCGAACCGCCTCATGGCCACCTTCTAATTCTTCCTC
CTCCCATATTTCGTTTCATAAGCGTGAGTTGGCTGACGCCCATGATGACG
CCAACTTGCCCAATGACACCCCGCACACCGACCCCACAATCAGCCGTGCT
TCGCAGCTCATGTCCCAAGCCCTCAACGTCCAAGCGCGCCTTTCTTCTCA
TCCCGCCCCCAACCACCATCTGCCCACTCTTCATTCTCAGTTCCCCCAAC
ACCACGGCGaacaacaacaacaacaacaacacgacgacgacgacgacgac
gacgacgacgacgacgacgacgacgacgactacgacgaagacgacgacgg
cggcgacgaACAGCAGCTTCAGCTCCACCACCGCCCCATCCAAGCCCCTG
ATCCCCATTTGTCACCATCGCGTTTACCCAGCGAACAGCAACACCCGCCC
CCCGCCAATCACCACTCCAAATCGAAACTAAACTCACTCAAATCGAACGG
ACAATATCAAACGCAATCACCACAACAAACCCAACAAACCCAACAAACCC
ACCAAAGCAAAACCGACAGTGACACTCACGACCAGCTCGCCGAATTCCAC
CAAACAATGCCTACCCATAATTTGGCCCGCACCCTTCCAAGTCGCTCCAC
CGCCACCATCGCTTCCAATCTGAACCGATGCACTGCTTCACAAGCGGCCT
CGCGCGCATCGCAATCATCGCACGCCTCTTTTGTCTTCTCCGAAGCATGG
TACGATCAAATGTGTATAGAGGCCATCCCGCTTCGCCACCGCATCCCCCC
AGATGTCACCCATCCATCGTTCTTTCGTGTCATGTGTGGCCGACACAACG
CTCTATTTCCGCCGGAGCCCGCCGCTAATACCGTCAACACGCACACCGCT
GAAGCCAACGTGCTGTACCAGGTGCTTGCCTTTCTTCATGAAAACCTCAA
CCAACTCTTCGATATGTTTGGCGATTTATTGGAGCTTGACGGTGTGGAAC
CCTCTGATCCCGCTCTGGTGCAACTGCGCTCCAGTTGGAAACATTTGCGC
GGCATCACCGAAATGTTGGAATGTCGCTACGATTTGCTATGCGGCTACAG
ACATCGCGACTACCGACAAACTGCTCTTGTGGAGGCACACATGACTCCAG
CGCTGGGGCACAGCGCACTCTCACAGGCTGTTAATGACGACATGCGCGGC
GTCCCTTCTGACACACCACAAGCGCCGGCTGAAACTCGTGAGAAAATGTT
GTACAACGAATTCAGCTGCAAGGCTGGCGACGAGCAACAAGGCAGTAATG
AAGAAAAGGCGCCTGGTCAATCAGTTGAAACCATCAAAAGCAAATCACTT
TTGCCTAGAAAGAAAAAAAATCTCACCGTGTCTTGGGCTGATCGACAAGC
GCCGAGCATTGAGTTTGTGTTTGTTCTAAGAAGATATGACATGATTAACG
CCTCCGTCGTTCGCGGTGCGTGGCACGAGTTTGGCGGCTACTTGTGGAGA
CTGATTATTTACCCGCGCAAAGAGAAAGGACTAGAAGGATTCATGTGGCT
CTATTTACAATGCGGGGGTTCTTGTTTCGATGGTGAAGACGACGATGGGG
ATGAGAATGGGGGGAATGAAGATGCAGAGGAAGAGGAGGAGGAAGGCAGG
ACTGAGGCGAATGAAGTGGATGAGCAGGAGGAAGATGAGTGCGAAGATGA
GTGCGAAGATGAGCGCGAAGATGGGGACCGCGTTTCGTGGTGCAGACCAA
CACAGTTTGTGATGCGCATCGTACACTCCACGGCGCCGCTCGCTCGAGCG
GCTGTGCGGTCAGGTCGCGTGATGTTTGATAGCGTAGAGACTTTGGAGCA
GTCCAAATGGTACAATGAGTCGGATGAGGCGTCGCTGTACCCGGACATCA
AACGGCAAGAGTACCACGTGTTTCGTAGCACAGCTGACGATTGGGGCTAC
GGTATTGTTCGGTTTTGTGCGCTGCAACCTGGCTTGTACGCGGACAACGA
TATGAATGTGGTGTTCACGGTTCGAATCATGCTGTTGTCGTTCGAGCAGC
CGCTACCTCGTCGCGACAGCGTGTGA

Coding sequence (CDS) from alignment at tig00000010_pilon:1709624..1711699+

>Gchil3953.t1 ID=Gchil3953.t1|Name=Gchil3953.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2076bp|location=Sequence derived from alignment at tig00000010_pilon:1709624..1711699+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGCCGCTACGCGAACCGCCTCATGGCCACCTTCTAATTCTTCCTC
CTCCCATATTTCGTTTCATAAGCGTGAGTTGGCTGACGCCCATGATGACG
CCAACTTGCCCAATGACACCCCGCACACCGACCCCACAATCAGCCGTGCT
TCGCAGCTCATGTCCCAAGCCCTCAACGTCCAAGCGCGCCTTTCTTCTCA
TCCCGCCCCCAACCACCATCTGCCCACTCTTCATTCTCAGTTCCCCCAAC
ACCACGGCGaacaacaacaacaacaacaacacgacgacgacgacgacgac
gacgacgacgacgacgacgacgacgacgactacgacgaagacgacgacgg
cggcgacgaACAGCAGCTTCAGCTCCACCACCGCCCCATCCAAGCCCCTG
ATCCCCATTTGTCACCATCGCGTTTACCCAGCGAACAGCAACACCCGCCC
CCCGCCAATCACCACTCCAAATCGAAACTAAACTCACTCAAATCGAACGG
ACAATATCAAACGCAATCACCACAACAAACCCAACAAACCCAACAAACCC
ACCAAAGCAAAACCGACAGTGACACTCACGACCAGCTCGCCGAATTCCAC
CAAACAATGCCTACCCATAATTTGGCCCGCACCCTTCCAAGTCGCTCCAC
CGCCACCATCGCTTCCAATCTGAACCGATGCACTGCTTCACAAGCGGCCT
CGCGCGCATCGCAATCATCGCACGCCTCTTTTGTCTTCTCCGAAGCATGG
TACGATCAAATGTGTATAGAGGCCATCCCGCTTCGCCACCGCATCCCCCC
AGATGTCACCCATCCATCGTTCTTTCGTGTCATGTGTGGCCGACACAACG
CTCTATTTCCGCCGGAGCCCGCCGCTAATACCGTCAACACGCACACCGCT
GAAGCCAACGTGCTGTACCAGGTGCTTGCCTTTCTTCATGAAAACCTCAA
CCAACTCTTCGATATGTTTGGCGATTTATTGGAGCTTGACGGTGTGGAAC
CCTCTGATCCCGCTCTGGTGCAACTGCGCTCCAGTTGGAAACATTTGCGC
GGCATCACCGAAATGTTGGAATGTCGCTACGATTTGCTATGCGGCTACAG
ACATCGCGACTACCGACAAACTGCTCTTGTGGAGGCACACATGACTCCAG
CGCTGGGGCACAGCGCACTCTCACAGGCTGTTAATGACGACATGCGCGGC
GTCCCTTCTGACACACCACAAGCGCCGGCTGAAACTCGTGAGAAAATGTT
GTACAACGAATTCAGCTGCAAGGCTGGCGACGAGCAACAAGGCAGTAATG
AAGAAAAGGCGCCTGGTCAATCAGTTGAAACCATCAAAAGCAAATCACTT
TTGCCTAGAAAGAAAAAAAATCTCACCGTGTCTTGGGCTGATCGACAAGC
GCCGAGCATTGAGTTTGTGTTTGTTCTAAGAAGATATGACATGATTAACG
CCTCCGTCGTTCGCGGTGCGTGGCACGAGTTTGGCGGCTACTTGTGGAGA
CTGATTATTTACCCGCGCAAAGAGAAAGGACTAGAAGGATTCATGTGGCT
CTATTTACAATGCGGGGGTTCTTGTTTCGATGGTGAAGACGACGATGGGG
ATGAGAATGGGGGGAATGAAGATGCAGAGGAAGAGGAGGAGGAAGGCAGG
ACTGAGGCGAATGAAGTGGATGAGCAGGAGGAAGATGAGTGCGAAGATGA
GTGCGAAGATGAGCGCGAAGATGGGGACCGCGTTTCGTGGTGCAGACCAA
CACAGTTTGTGATGCGCATCGTACACTCCACGGCGCCGCTCGCTCGAGCG
GCTGTGCGGTCAGGTCGCGTGATGTTTGATAGCGTAGAGACTTTGGAGCA
GTCCAAATGGTACAATGAGTCGGATGAGGCGTCGCTGTACCCGGACATCA
AACGGCAAGAGTACCACGTGTTTCGTAGCACAGCTGACGATTGGGGCTAC
GGTATTGTTCGGTTTTGTGCGCTGCAACCTGGCTTGTACGCGGACAACGA
TATGAATGTGGTGTTCACGGTTCGAATCATGCTGTTGTCGTTCGAGCAGC
CGCTACCTCGTCGCGACAGCGTGTGA