Gchil3951.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3951.t1
Unique NameGchil3951.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length490
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:1666017..1667486 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog218851.Aquca_031_00019.1
PFAMsPPR,PPR_2
Max annot lvl35493|Streptophyta
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:1901360,GO:1901363
Evalue9.53e-10
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota,37R24@33090|Viridiplantae,3GH72@35493|Streptophyta
DescriptionPentatricopeptide repeat-containing protein
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3951Gchil3951Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 1666017..1667486 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3951.t1.stop1Gchil3951.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 1666017..1666019 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3951.t1.CDS1Gchil3951.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1666017..1667486 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3951.t1.exon1Gchil3951.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1666017..1667486 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3951.t1.start1Gchil3951.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 1667484..1667486 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3951.t1Gchil3951.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 1666017..1667486 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3951.t1 ID=Gchil3951.t1|Name=Gchil3951.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=490bp
MIAFAPASVATPRTPSHPSPSRTSPASPGHLHRSPRRRRVSFRPASPSAR
PHVDHASTTSVPSISAFLATPPAPPPPAVIRPPQASHPPEPLPQPFTLRA
VNMRLRALVRNKNAFDRCLWLHGQLRQHSIKPDKYTYSLLLTACATVRNS
KHAMQLYHELRQNRVAMDDHLRANLLTVVARSKQPDIGFAMWVFASSPKP
SLLLCNILIDLFARAHNATGAESVHRYMNAVGIQADAYTVSALIRVHVAS
AGPAAALLALREMWRAGLSVHVAAFGQVIAAFGQLGMIDEAVALFDEMTV
FGVQPQQTTFNILIEACKGRNLQKAFEIYDEMKASTSFRGDRYTFHALIN
CCLAAREAERVPGLYAAIKRAGFQPNQISYRLALVAAGIMMDIDFMEQVA
GDMKNNLCEPRMDTMATLVAAAVRCSDLQAALSHFSNFVSCRDSLRNARF
FDEIRGALRRFDEQGLQDLQDSMHTQLVVDELERSCMRE*
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spliced messenger RNA

>Gchil3951.t1 ID=Gchil3951.t1|Name=Gchil3951.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1470bp|location=Sequence derived from alignment at tig00000010_pilon:1666017..1667486- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGCATTCGCTCCAGCCTCCGTGGCGACTCCTCGTACTCCATCGCA
TCCGTCTCCATCGCGGACATCACCCGCTTCGCCCGGACATTTGCATCGTT
CTCCGAGGAGACGCCGTGTCTCGTTCCGCCCAGCATCGCCATCAGCTCGC
CCGCATGTTGATCATGCTTCTACCACGTCTGTGCCATCAATTTCAGCCTT
CCTGGCTACTCCTCCCGCGCCACCACCGCCGGCCGTCATTCGCCCGCCGC
AGGCATCGCACCCGCCAGAGCCGTTACCACAACCTTTTACTCTCCGTGCG
GTCAACATGCGTTTAAGAGCGCTTGTGCGGAACAAGAATGCTTTCGATCG
CTGTCTGTGGCTTCATGGTCAACTAAGGCAGCACAGTATCAAACCCGACA
AGTATACATATAGTTTGTTGCTGACGGCATGCGCAACTGTCAGAAACTCG
AAACATGCAATGCAATTGTACCATGAGCTCCGCCAAAATCGTGTCGCTAT
GGATGATCATCTACGCGCAAACTTGCTTACCGTGGTGGCTCGATCCAAGC
AGCCGGACATAGGATTTGCGATGTGGGTGTTCGCCTCGTCTCCAAAGCCC
TCCTTATTGCTCTGCAACATTTTGATCGACCTCTTTGCTCGCGCACATAA
TGCCACCGGTGCAGAGTCTGTTCACCGTTACATGAATGCTGTTGGAATTC
AGGCCGATGCGTACACAGTTTCTGCATTAATCCGGGTGCACGTGGCCTCA
GCAGGCCCTGCTGCTGCCCTACTAGCGCTTCGTGAAATGTGGCGCGCTGG
GCTTAGTGTTCATGTCGCAGCCTTCGGACAGGTGATAGCGGCGTTTGGAC
AATTGGGCATGATAGATGAGGCGGTTGCTCTTTTCGATGAGATGACCGTA
TTTGGGGTTCAACCGCAACAGACCACGTTCAACATTTTGATAGAGGCCTG
TAAAGGTCGCAACTTGCAAAAAGCCTTCGAAATCTACGATGAAATGAAGG
CCAGCACGTCGTTCAGGGGCGATCGTTATACGTTTCACGCGTTGATTAAT
TGTTGTCTGGCAGCACGCGAGGCAGAACGCGTCCCGGGGTTGTACGCAGC
CATTAAGCGAGCTGGGTTTCAACCGAATCAAATAAGTTATCGCTTGGCGC
TTGTGGCGGCCGGGATAATGATGGACATAGACTTCATGGAGCAAGTGGCT
GGGGACATGAAAAACAATTTGTGTGAGCCGCGGATGGATACTATGGCCAC
CCTTGTCGCCGCAGCAGTTCGGTGCTCGGATTTGCAGGCGGCTCTCAGCC
ACTTTTCCAATTTTGTTAGTTGCCGGGACAGCCTTCGAAACGCTCGTTTC
TTTGATGAAATTCGCGGGGCCCTACGTCGTTTCGACGAGCAGGGCTTGCA
GGACTTGCAGGACTCGATGCACACGCAGTTGGTTGTTGACGAGTTAGAAC
GCAGTTGCATGAGGGAGTAA
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protein sequence of Gchil3951.t1

>Gchil3951.t1 ID=Gchil3951.t1|Name=Gchil3951.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=490bp
MIAFAPASVATPRTPSHPSPSRTSPASPGHLHRSPRRRRVSFRPASPSAR
PHVDHASTTSVPSISAFLATPPAPPPPAVIRPPQASHPPEPLPQPFTLRA
VNMRLRALVRNKNAFDRCLWLHGQLRQHSIKPDKYTYSLLLTACATVRNS
KHAMQLYHELRQNRVAMDDHLRANLLTVVARSKQPDIGFAMWVFASSPKP
SLLLCNILIDLFARAHNATGAESVHRYMNAVGIQADAYTVSALIRVHVAS
AGPAAALLALREMWRAGLSVHVAAFGQVIAAFGQLGMIDEAVALFDEMTV
FGVQPQQTTFNILIEACKGRNLQKAFEIYDEMKASTSFRGDRYTFHALIN
CCLAAREAERVPGLYAAIKRAGFQPNQISYRLALVAAGIMMDIDFMEQVA
GDMKNNLCEPRMDTMATLVAAAVRCSDLQAALSHFSNFVSCRDSLRNARF
FDEIRGALRRFDEQGLQDLQDSMHTQLVVDELERSCMRE*
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mRNA from alignment at tig00000010_pilon:1666017..1667486-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3951.t1 ID=Gchil3951.t1|Name=Gchil3951.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1470bp|location=Sequence derived from alignment at tig00000010_pilon:1666017..1667486- (Gracilaria chilensis NLEC103_M9 male)
ATGATTGCATTCGCTCCAGCCTCCGTGGCGACTCCTCGTACTCCATCGCA
TCCGTCTCCATCGCGGACATCACCCGCTTCGCCCGGACATTTGCATCGTT
CTCCGAGGAGACGCCGTGTCTCGTTCCGCCCAGCATCGCCATCAGCTCGC
CCGCATGTTGATCATGCTTCTACCACGTCTGTGCCATCAATTTCAGCCTT
CCTGGCTACTCCTCCCGCGCCACCACCGCCGGCCGTCATTCGCCCGCCGC
AGGCATCGCACCCGCCAGAGCCGTTACCACAACCTTTTACTCTCCGTGCG
GTCAACATGCGTTTAAGAGCGCTTGTGCGGAACAAGAATGCTTTCGATCG
CTGTCTGTGGCTTCATGGTCAACTAAGGCAGCACAGTATCAAACCCGACA
AGTATACATATAGTTTGTTGCTGACGGCATGCGCAACTGTCAGAAACTCG
AAACATGCAATGCAATTGTACCATGAGCTCCGCCAAAATCGTGTCGCTAT
GGATGATCATCTACGCGCAAACTTGCTTACCGTGGTGGCTCGATCCAAGC
AGCCGGACATAGGATTTGCGATGTGGGTGTTCGCCTCGTCTCCAAAGCCC
TCCTTATTGCTCTGCAACATTTTGATCGACCTCTTTGCTCGCGCACATAA
TGCCACCGGTGCAGAGTCTGTTCACCGTTACATGAATGCTGTTGGAATTC
AGGCCGATGCGTACACAGTTTCTGCATTAATCCGGGTGCACGTGGCCTCA
GCAGGCCCTGCTGCTGCCCTACTAGCGCTTCGTGAAATGTGGCGCGCTGG
GCTTAGTGTTCATGTCGCAGCCTTCGGACAGGTGATAGCGGCGTTTGGAC
AATTGGGCATGATAGATGAGGCGGTTGCTCTTTTCGATGAGATGACCGTA
TTTGGGGTTCAACCGCAACAGACCACGTTCAACATTTTGATAGAGGCCTG
TAAAGGTCGCAACTTGCAAAAAGCCTTCGAAATCTACGATGAAATGAAGG
CCAGCACGTCGTTCAGGGGCGATCGTTATACGTTTCACGCGTTGATTAAT
TGTTGTCTGGCAGCACGCGAGGCAGAACGCGTCCCGGGGTTGTACGCAGC
CATTAAGCGAGCTGGGTTTCAACCGAATCAAATAAGTTATCGCTTGGCGC
TTGTGGCGGCCGGGATAATGATGGACATAGACTTCATGGAGCAAGTGGCT
GGGGACATGAAAAACAATTTGTGTGAGCCGCGGATGGATACTATGGCCAC
CCTTGTCGCCGCAGCAGTTCGGTGCTCGGATTTGCAGGCGGCTCTCAGCC
ACTTTTCCAATTTTGTTAGTTGCCGGGACAGCCTTCGAAACGCTCGTTTC
TTTGATGAAATTCGCGGGGCCCTACGTCGTTTCGACGAGCAGGGCTTGCA
GGACTTGCAGGACTCGATGCACACGCAGTTGGTTGTTGACGAGTTAGAAC
GCAGTTGCATGAGGGAGTAA
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Coding sequence (CDS) from alignment at tig00000010_pilon:1666017..1667486-

>Gchil3951.t1 ID=Gchil3951.t1|Name=Gchil3951.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1470bp|location=Sequence derived from alignment at tig00000010_pilon:1666017..1667486- (Gracilaria chilensis NLEC103_M9 male)
ATGATTGCATTCGCTCCAGCCTCCGTGGCGACTCCTCGTACTCCATCGCA
TCCGTCTCCATCGCGGACATCACCCGCTTCGCCCGGACATTTGCATCGTT
CTCCGAGGAGACGCCGTGTCTCGTTCCGCCCAGCATCGCCATCAGCTCGC
CCGCATGTTGATCATGCTTCTACCACGTCTGTGCCATCAATTTCAGCCTT
CCTGGCTACTCCTCCCGCGCCACCACCGCCGGCCGTCATTCGCCCGCCGC
AGGCATCGCACCCGCCAGAGCCGTTACCACAACCTTTTACTCTCCGTGCG
GTCAACATGCGTTTAAGAGCGCTTGTGCGGAACAAGAATGCTTTCGATCG
CTGTCTGTGGCTTCATGGTCAACTAAGGCAGCACAGTATCAAACCCGACA
AGTATACATATAGTTTGTTGCTGACGGCATGCGCAACTGTCAGAAACTCG
AAACATGCAATGCAATTGTACCATGAGCTCCGCCAAAATCGTGTCGCTAT
GGATGATCATCTACGCGCAAACTTGCTTACCGTGGTGGCTCGATCCAAGC
AGCCGGACATAGGATTTGCGATGTGGGTGTTCGCCTCGTCTCCAAAGCCC
TCCTTATTGCTCTGCAACATTTTGATCGACCTCTTTGCTCGCGCACATAA
TGCCACCGGTGCAGAGTCTGTTCACCGTTACATGAATGCTGTTGGAATTC
AGGCCGATGCGTACACAGTTTCTGCATTAATCCGGGTGCACGTGGCCTCA
GCAGGCCCTGCTGCTGCCCTACTAGCGCTTCGTGAAATGTGGCGCGCTGG
GCTTAGTGTTCATGTCGCAGCCTTCGGACAGGTGATAGCGGCGTTTGGAC
AATTGGGCATGATAGATGAGGCGGTTGCTCTTTTCGATGAGATGACCGTA
TTTGGGGTTCAACCGCAACAGACCACGTTCAACATTTTGATAGAGGCCTG
TAAAGGTCGCAACTTGCAAAAAGCCTTCGAAATCTACGATGAAATGAAGG
CCAGCACGTCGTTCAGGGGCGATCGTTATACGTTTCACGCGTTGATTAAT
TGTTGTCTGGCAGCACGCGAGGCAGAACGCGTCCCGGGGTTGTACGCAGC
CATTAAGCGAGCTGGGTTTCAACCGAATCAAATAAGTTATCGCTTGGCGC
TTGTGGCGGCCGGGATAATGATGGACATAGACTTCATGGAGCAAGTGGCT
GGGGACATGAAAAACAATTTGTGTGAGCCGCGGATGGATACTATGGCCAC
CCTTGTCGCCGCAGCAGTTCGGTGCTCGGATTTGCAGGCGGCTCTCAGCC
ACTTTTCCAATTTTGTTAGTTGCCGGGACAGCCTTCGAAACGCTCGTTTC
TTTGATGAAATTCGCGGGGCCCTACGTCGTTTCGACGAGCAGGGCTTGCA
GGACTTGCAGGACTCGATGCACACGCAGTTGGTTGTTGACGAGTTAGAAC
GCAGTTGCATGAGGGAGTAA
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