Gchil3950.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3950.t1
Unique NameGchil3950.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length266
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:1664340..1665342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707378.1
Preferred nameRPS3a
PFAMsRibosomal_S3Ae
Max annot lvl2759|Eukaryota
KEGG rclassRC00434
KEGG koko:K01807,ko:K02984
KEGG ReactionR01056
KEGG Pathwayko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03010,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map03010
KEGG ModuleM00004,M00007,M00165,M00167,M00177,M00179,M00580
GOsGO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0022626,GO:0022627,GO:0030054,GO:0030312,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0034645,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0055044,GO:0070013,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue1.55e-124
EggNOG OGsCOG1890@1|root,KOG1628@2759|Eukaryota
EC5.3.1.6
Descriptionstructural constituent of ribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3950Gchil3950Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 1664340..1665342 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3950.t1Gchil3950.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 1664340..1665342 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3950.t1.stop1Gchil3950.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 1664340..1664342 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3950.t1.CDS1Gchil3950.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1664340..1665134 -
Gchil3950.t1.CDS2Gchil3950.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1665340..1665342 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3950.t1.exon1Gchil3950.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1664340..1665134 -
Gchil3950.t1.exon2Gchil3950.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1665340..1665342 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3950.t1.intron1Gchil3950.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000010_pilon 1665135..1665339 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3950.t1.start1Gchil3950.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 1665340..1665342 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3950.t1 ID=Gchil3950.t1|Name=Gchil3950.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=266bp
MAVGKNKRLSKKGKGSRKKVMDPFLRKEWYDIKAPSIFNVRQVGKTLVSR
TQGTKIASEALKGRIYEVILADLQKSEDMAYRKIRLKCEEVQGRSCLTNF
HGMDLTRDKLCSLVRKWQTIIEAHVDVKTTDGYLLRMFAIGFTKRRDGQV
KKTTYAQSSQIREIRAKMVEIMARDASECDLKELVRKFIPEVIGKEIMKA
TSGIYPLRDVHIRKVKILKAPKFDITKLMELHEAGGVTEDVGAPIEAAPE
EPMAPQEPIPGDIPA*
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spliced messenger RNA

>Gchil3950.t1 ID=Gchil3950.t1|Name=Gchil3950.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=798bp|location=Sequence derived from alignment at tig00000010_pilon:1664340..1665342- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGTCGGTAAAAATAAGCGTTTGTCAAAGAAGGGAAAGGGATCCCG
TAAGAAGGTAATGGATCCGTTTCTGCGCAAGGAATGGTACGACATCAAGG
CTCCATCTATCTTCAATGTGCGTCAGGTTGGAAAGACTCTAGTTTCGCGC
ACCCAAGGTACGAAGATCGCATCTGAAGCCCTTAAAGGCCGTATCTATGA
AGTCATATTGGCTGATCTTCAGAAGTCTGAGGACATGGCTTACCGTAAGA
TTCGTCTAAAGTGTGAGGAGGTTCAAGGACGTTCTTGCCTCACAAATTTC
CATGGTATGGATCTCACTCGTGATAAATTGTGTTCGCTTGTCCGCAAATG
GCAAACTATTATCGAAGCTCATGTCGATGTCAAGACTACCGATGGCTATT
TACTGCGGATGTTCGCAATTGGATTTACGAAGCGCAGAGATGGCCAAGTG
AAGAAGACGACTTACGCCCAGAGCAGCCAAATCCGTGAAATCCGTGCGAA
GATGGTTGAAATTATGGCCCGTGATGCGTCGGAGTGTGATCTCAAAGAAC
TTGTTCGAAAGTTCATCCCCGAAGTCATTGGAAAGGAGATAATGAAAGCC
ACTTCCGGTATTTACCCGCTCAGGGATGTACACATTAGAAAAGTGAAGAT
TCTGAAAGCTCCGAAGTTTGATATTACCAAGCTTATGGAACTCCATGAAG
CAGGTGGAGTGACTGAGGACGTAGGTGCTCCTATTGAGGCGGCTCCCGAA
GAGCCTATGGCGCCACAGGAGCCTATTCCTGGTGATATTCCGGCGTAA
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protein sequence of Gchil3950.t1

>Gchil3950.t1 ID=Gchil3950.t1|Name=Gchil3950.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=266bp
MAVGKNKRLSKKGKGSRKKVMDPFLRKEWYDIKAPSIFNVRQVGKTLVSR
TQGTKIASEALKGRIYEVILADLQKSEDMAYRKIRLKCEEVQGRSCLTNF
HGMDLTRDKLCSLVRKWQTIIEAHVDVKTTDGYLLRMFAIGFTKRRDGQV
KKTTYAQSSQIREIRAKMVEIMARDASECDLKELVRKFIPEVIGKEIMKA
TSGIYPLRDVHIRKVKILKAPKFDITKLMELHEAGGVTEDVGAPIEAAPE
EPMAPQEPIPGDIPA*
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mRNA from alignment at tig00000010_pilon:1664340..1665342-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3950.t1 ID=Gchil3950.t1|Name=Gchil3950.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1003bp|location=Sequence derived from alignment at tig00000010_pilon:1664340..1665342- (Gracilaria chilensis NLEC103_M9 male)
ATGGTAAGTAGCTTTTTCTACGAAAAACGTGGTCCGCTCTCAATGTTTTA
CATGGATTAAGGCCTTTGCCTTTGCTGAGCTGTTCCGTGCCCCTAACATC
GAACTCGCATTGGGCACCTAACTCGCATTGGGCACCTAATTCGCACCGGG
CGATCGTCCATATTTATTCATTTCACTAACTTTCAGAGGTTTGATTCCAT
TTATGTAGGCGGTCGGTAAAAATAAGCGTTTGTCAAAGAAGGGAAAGGGA
TCCCGTAAGAAGGTAATGGATCCGTTTCTGCGCAAGGAATGGTACGACAT
CAAGGCTCCATCTATCTTCAATGTGCGTCAGGTTGGAAAGACTCTAGTTT
CGCGCACCCAAGGTACGAAGATCGCATCTGAAGCCCTTAAAGGCCGTATC
TATGAAGTCATATTGGCTGATCTTCAGAAGTCTGAGGACATGGCTTACCG
TAAGATTCGTCTAAAGTGTGAGGAGGTTCAAGGACGTTCTTGCCTCACAA
ATTTCCATGGTATGGATCTCACTCGTGATAAATTGTGTTCGCTTGTCCGC
AAATGGCAAACTATTATCGAAGCTCATGTCGATGTCAAGACTACCGATGG
CTATTTACTGCGGATGTTCGCAATTGGATTTACGAAGCGCAGAGATGGCC
AAGTGAAGAAGACGACTTACGCCCAGAGCAGCCAAATCCGTGAAATCCGT
GCGAAGATGGTTGAAATTATGGCCCGTGATGCGTCGGAGTGTGATCTCAA
AGAACTTGTTCGAAAGTTCATCCCCGAAGTCATTGGAAAGGAGATAATGA
AAGCCACTTCCGGTATTTACCCGCTCAGGGATGTACACATTAGAAAAGTG
AAGATTCTGAAAGCTCCGAAGTTTGATATTACCAAGCTTATGGAACTCCA
TGAAGCAGGTGGAGTGACTGAGGACGTAGGTGCTCCTATTGAGGCGGCTC
CCGAAGAGCCTATGGCGCCACAGGAGCCTATTCCTGGTGATATTCCGGCG
TAA
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Coding sequence (CDS) from alignment at tig00000010_pilon:1664340..1665342-

>Gchil3950.t1 ID=Gchil3950.t1|Name=Gchil3950.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=798bp|location=Sequence derived from alignment at tig00000010_pilon:1664340..1665342- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGTCGGTAAAAATAAGCGTTTGTCAAAGAAGGGAAAGGGATCCCG
TAAGAAGGTAATGGATCCGTTTCTGCGCAAGGAATGGTACGACATCAAGG
CTCCATCTATCTTCAATGTGCGTCAGGTTGGAAAGACTCTAGTTTCGCGC
ACCCAAGGTACGAAGATCGCATCTGAAGCCCTTAAAGGCCGTATCTATGA
AGTCATATTGGCTGATCTTCAGAAGTCTGAGGACATGGCTTACCGTAAGA
TTCGTCTAAAGTGTGAGGAGGTTCAAGGACGTTCTTGCCTCACAAATTTC
CATGGTATGGATCTCACTCGTGATAAATTGTGTTCGCTTGTCCGCAAATG
GCAAACTATTATCGAAGCTCATGTCGATGTCAAGACTACCGATGGCTATT
TACTGCGGATGTTCGCAATTGGATTTACGAAGCGCAGAGATGGCCAAGTG
AAGAAGACGACTTACGCCCAGAGCAGCCAAATCCGTGAAATCCGTGCGAA
GATGGTTGAAATTATGGCCCGTGATGCGTCGGAGTGTGATCTCAAAGAAC
TTGTTCGAAAGTTCATCCCCGAAGTCATTGGAAAGGAGATAATGAAAGCC
ACTTCCGGTATTTACCCGCTCAGGGATGTACACATTAGAAAAGTGAAGAT
TCTGAAAGCTCCGAAGTTTGATATTACCAAGCTTATGGAACTCCATGAAG
CAGGTGGAGTGACTGAGGACGTAGGTGCTCCTATTGAGGCGGCTCCCGAA
GAGCCTATGGCGCCACAGGAGCCTATTCCTGGTGATATTCCGGCGTAA
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