Gchil3944.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3944.t1
Unique NameGchil3944.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length86
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:1573108..1573365 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMI216CT
Preferred nameTIMM8B
PFAMszf-Tim10_DDP
Max annot lvl2759|Eukaryota
KEGG koko:K01209,ko:K17780
KEGG TC3.A.8.1
KEGG ReactionR01762
KEGG Pathwayko00520,map00520
GOsGO:0003008,GO:0003674,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005758,GO:0006605,GO:0006626,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007600,GO:0007605,GO:0008104,GO:0008150,GO:0008270,GO:0008320,GO:0008324,GO:0008565,GO:0009987,GO:0015031,GO:0015075,GO:0015318,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019866,GO:0022804,GO:0022857,GO:0022884,GO:0022890,GO:0030001,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032501,GO:0032991,GO:0033036,GO:0033365,GO:0034220,GO:0034613,GO:0042719,GO:0042886,GO:0042887,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0046872,GO:0046873,GO:0046907,GO:0046914,GO:0050877,GO:0050954,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072321,GO:0072594,GO:0072655,GO:0072657,GO:0090150,GO:0090151,GO:0098655,GO:0098796,GO:0098798,GO:0098800,GO:1904680,GO:1990351,GO:1990542
Evalue1.52e-26
EggNOG OGsKOG3489@1|root,KOG3489@2759|Eukaryota
EC3.2.1.55
Descriptionprotein transport
COG categoryO
CAZyGH51
BRITEko00000,ko00001,ko01000,ko02000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3944Gchil3944Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 1573108..1573365 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3944.t1.stop1Gchil3944.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 1573108..1573110 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3944.t1.CDS1Gchil3944.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1573108..1573365 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3944.t1.exon1Gchil3944.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1573108..1573365 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3944.t1.start1Gchil3944.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 1573363..1573365 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3944.t1Gchil3944.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 1573108..1573365 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3944.t1 ID=Gchil3944.t1|Name=Gchil3944.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=86bp
MDDTADPRAAAAMQAFIQEENQKAAVQQIISKLTDTCWDKCMGKPGAKLS
SWETDCISNCAERFLDTSIFIVQRMEKQAQSRNGL*
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spliced messenger RNA

>Gchil3944.t1 ID=Gchil3944.t1|Name=Gchil3944.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=258bp|location=Sequence derived from alignment at tig00000010_pilon:1573108..1573365- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGACACCGCAGATCCACGCGCCGCTGCCGCTATGCAAGCGTTTAT
TCAGGAGGAAAATCAGAAGGCTGCCGTGCAACAGATCATCTCCAAACTTA
CGGACACCTGCTGGGACAAATGCATGGGTAAGCCGGGGGCCAAACTTTCC
TCATGGGAAACCGATTGCATCTCCAATTGTGCCGAGCGATTCTTGGACAC
GTCGATCTTCATCGTGCAGCGCATGGAGAAGCAAGCCCAGTCTCGAAACG
GTCTCTAA
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protein sequence of Gchil3944.t1

>Gchil3944.t1 ID=Gchil3944.t1|Name=Gchil3944.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=86bp
MDDTADPRAAAAMQAFIQEENQKAAVQQIISKLTDTCWDKCMGKPGAKLS
SWETDCISNCAERFLDTSIFIVQRMEKQAQSRNGL*
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mRNA from alignment at tig00000010_pilon:1573108..1573365-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3944.t1 ID=Gchil3944.t1|Name=Gchil3944.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=258bp|location=Sequence derived from alignment at tig00000010_pilon:1573108..1573365- (Gracilaria chilensis NLEC103_M9 male)
ATGGACGACACCGCAGATCCACGCGCCGCTGCCGCTATGCAAGCGTTTAT
TCAGGAGGAAAATCAGAAGGCTGCCGTGCAACAGATCATCTCCAAACTTA
CGGACACCTGCTGGGACAAATGCATGGGTAAGCCGGGGGCCAAACTTTCC
TCATGGGAAACCGATTGCATCTCCAATTGTGCCGAGCGATTCTTGGACAC
GTCGATCTTCATCGTGCAGCGCATGGAGAAGCAAGCCCAGTCTCGAAACG
GTCTCTAA
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Coding sequence (CDS) from alignment at tig00000010_pilon:1573108..1573365-

>Gchil3944.t1 ID=Gchil3944.t1|Name=Gchil3944.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=258bp|location=Sequence derived from alignment at tig00000010_pilon:1573108..1573365- (Gracilaria chilensis NLEC103_M9 male)
ATGGACGACACCGCAGATCCACGCGCCGCTGCCGCTATGCAAGCGTTTAT
TCAGGAGGAAAATCAGAAGGCTGCCGTGCAACAGATCATCTCCAAACTTA
CGGACACCTGCTGGGACAAATGCATGGGTAAGCCGGGGGCCAAACTTTCC
TCATGGGAAACCGATTGCATCTCCAATTGTGCCGAGCGATTCTTGGACAC
GTCGATCTTCATCGTGCAGCGCATGGAGAAGCAAGCCCAGTCTCGAAACG
GTCTCTAA
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