Gchil3938.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3938.t1
Unique NameGchil3938.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length388
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:1489587..1490839 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109760.SPPG_08777T0
Preferred nameNOP14
PFAMsNop14
Max annot lvl4751|Fungi
KEGG koko:K14766
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0030688,GO:0030689,GO:0030692,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Evalue1.17e-14
EggNOG OGsKOG2147@1|root,KOG2147@2759|Eukaryota,38BJG@33154|Opisthokonta,3NX37@4751|Fungi
Descriptionnucleolar complex protein
COG categoryJ
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3938Gchil3938Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 1489587..1490839 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3938.t1Gchil3938.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 1489587..1490839 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3938.t1.stop1Gchil3938.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 1489587..1489589 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3938.t1.CDS1Gchil3938.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1489587..1489606 -
Gchil3938.t1.CDS2Gchil3938.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1489696..1490839 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3938.t1.exon1Gchil3938.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1489587..1489606 -
Gchil3938.t1.exon2Gchil3938.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1489696..1490839 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3938.t1.intron1Gchil3938.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000010_pilon 1489607..1489695 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3938.t1.start1Gchil3938.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 1490837..1490839 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3938.t1 ID=Gchil3938.t1|Name=Gchil3938.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=388bp
MPSKRRRTLVGSVSKKPQPPNRFEEQWNKINRTTQRKKQQQIHSSSSNRV
IDGRIGEQNPGLDEQSRYLFRLQRERAKRSKKRNLFSLDEEDQIDKDGRE
FPSLEEMDEPVLSDAGEGSEISNPPEVSDQPFFSVKKSEARHDEQQQSEP
ELRSKREVMNEVIEKSKMFKTLRQHIKHQTDEETMKLDEKLPQIMHLLAQ
SNVQPLKTSKLTLKRIEKKISIFDDEDHQRWMFSSQYAGGKTKNYFSYED
VYRQLAQEKRAAPSERLFTEEETAQRQKEHLQKLEELRQARMKHLDDEEG
KTKVKASGDDLNDNFGDLQSDSEEDGEERDSESDAEGNEIEKQNQSVRDL
PAEFLLAVESDGLKDIPFMFKKAPLSEADLQKSPKVD*
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spliced messenger RNA

>Gchil3938.t1 ID=Gchil3938.t1|Name=Gchil3938.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1164bp|location=Sequence derived from alignment at tig00000010_pilon:1489587..1490839- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTCAAAGCGTAGGAGGACGTTGGTCGGCTCCGTGTCAAAGAAACC
CCAACCTCCAAATCGCTTTGAAGAGCAATGGAATAAAATTAATCGCACCA
CACAACGGAAGAAGCAGCAGCAAATCCATTCGTCTTCGTCAAATCGTGTA
ATTGACGGTCGAATTGGTGAACAGAATCCAGGTCTTGACGAGCAATCTCG
CTACTTATTTCGTCTGCAGCGCGAACGTGCAAAGCGATCCAAGAAAAGAA
ACCTCTTCTCACTAGACGAAGAGGATCAAATCGATAAAGATGGGAGAGAA
TTCCCCTCTCTTGAAGAAATGGATGAACCCGTACTTTCCGATGCTGGCGA
AGGGTCTGAGATAAGCAATCCTCCTGAAGTTAGTGATCAACCTTTCTTTT
CGGTCAAGAAAAGTGAAGCTAGGCATGATGAACAACAACAGTCAGAACCA
GAACTTCGTTCAAAAAGAGAAGTAATGAACGAAGTCATTGAGAAGAGCAA
AATGTTCAAAACTCTGCGACAGCACATCAAACACCAAACAGACGAGGAAA
CAATGAAATTAGATGAGAAGTTACCGCAGATAATGCACCTGTTGGCCCAG
TCCAACGTACAGCCTTTGAAAACGTCAAAACTCACTCTGAAGCGTATTGA
GAAGAAAATATCCATCTTTGATGATGAAGATCATCAAAGATGGATGTTTT
CTTCTCAATACGCTGGAGGGAAGACGAAAAATTATTTTAGTTATGAAGAC
GTCTACAGACAACTTGCACAGGAAAAGAGAGCGGCACCCTCCGAACGTCT
TTTCACCGAGGAGGAAACAGCACAACGCCAGAAGGAACATTTACAGAAGC
TGGAAGAGCTACGTCAAGCTCGCATGAAGCATCTTGACGATGAAGAAGGG
AAGACAAAAGTGAAAGCCAGTGGTGATGATCTTAATGATAATTTTGGAGA
TTTGCAGTCTGATAGTGAAGAAGACGGGGAAGAACGCGACTCTGAATCCG
ATGCTGAAGGCAATGAAATCGAGAAACAAAATCAAAGCGTCAGAGACCTG
CCTGCTGAATTTCTACTCGCTGTGGAAAGCGATGGTCTGAAGGATATACC
GTTTATGTTCAAAAAAGCACCCCTGAGCGAGGCTGATCTTCAGAAATCGC
CCAAAGTTGATTAG
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protein sequence of Gchil3938.t1

>Gchil3938.t1 ID=Gchil3938.t1|Name=Gchil3938.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=388bp
MPSKRRRTLVGSVSKKPQPPNRFEEQWNKINRTTQRKKQQQIHSSSSNRV
IDGRIGEQNPGLDEQSRYLFRLQRERAKRSKKRNLFSLDEEDQIDKDGRE
FPSLEEMDEPVLSDAGEGSEISNPPEVSDQPFFSVKKSEARHDEQQQSEP
ELRSKREVMNEVIEKSKMFKTLRQHIKHQTDEETMKLDEKLPQIMHLLAQ
SNVQPLKTSKLTLKRIEKKISIFDDEDHQRWMFSSQYAGGKTKNYFSYED
VYRQLAQEKRAAPSERLFTEEETAQRQKEHLQKLEELRQARMKHLDDEEG
KTKVKASGDDLNDNFGDLQSDSEEDGEERDSESDAEGNEIEKQNQSVRDL
PAEFLLAVESDGLKDIPFMFKKAPLSEADLQKSPKVD*
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mRNA from alignment at tig00000010_pilon:1489587..1490839-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3938.t1 ID=Gchil3938.t1|Name=Gchil3938.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1253bp|location=Sequence derived from alignment at tig00000010_pilon:1489587..1490839- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGTCAAAGCGTAGGAGGACGTTGGTCGGCTCCGTGTCAAAGAAACC
CCAACCTCCAAATCGCTTTGAAGAGCAATGGAATAAAATTAATCGCACCA
CACAACGGAAGAAGCAGCAGCAAATCCATTCGTCTTCGTCAAATCGTGTA
ATTGACGGTCGAATTGGTGAACAGAATCCAGGTCTTGACGAGCAATCTCG
CTACTTATTTCGTCTGCAGCGCGAACGTGCAAAGCGATCCAAGAAAAGAA
ACCTCTTCTCACTAGACGAAGAGGATCAAATCGATAAAGATGGGAGAGAA
TTCCCCTCTCTTGAAGAAATGGATGAACCCGTACTTTCCGATGCTGGCGA
AGGGTCTGAGATAAGCAATCCTCCTGAAGTTAGTGATCAACCTTTCTTTT
CGGTCAAGAAAAGTGAAGCTAGGCATGATGAACAACAACAGTCAGAACCA
GAACTTCGTTCAAAAAGAGAAGTAATGAACGAAGTCATTGAGAAGAGCAA
AATGTTCAAAACTCTGCGACAGCACATCAAACACCAAACAGACGAGGAAA
CAATGAAATTAGATGAGAAGTTACCGCAGATAATGCACCTGTTGGCCCAG
TCCAACGTACAGCCTTTGAAAACGTCAAAACTCACTCTGAAGCGTATTGA
GAAGAAAATATCCATCTTTGATGATGAAGATCATCAAAGATGGATGTTTT
CTTCTCAATACGCTGGAGGGAAGACGAAAAATTATTTTAGTTATGAAGAC
GTCTACAGACAACTTGCACAGGAAAAGAGAGCGGCACCCTCCGAACGTCT
TTTCACCGAGGAGGAAACAGCACAACGCCAGAAGGAACATTTACAGAAGC
TGGAAGAGCTACGTCAAGCTCGCATGAAGCATCTTGACGATGAAGAAGGG
AAGACAAAAGTGAAAGCCAGTGGTGATGATCTTAATGATAATTTTGGAGA
TTTGCAGTCTGATAGTGAAGAAGACGGGGAAGAACGCGACTCTGAATCCG
ATGCTGAAGGCAATGAAATCGAGAAACAAAATCAAAGCGTCAGAGACCTG
CCTGCTGAATTTCTACTCGCTGTGGAAAGCGATGGTCTGAAGGATATACC
GTTTATGTTCAAAAAAGCACCCCTGAGCGAGGCTGATCTTCAGAGTTTGT
TCGAGGGGAGGACGGTCCAACAACGCTCCTTGATAATGGACAGGCTTCTG
AAGTGTTTTGCCGCTTCTCTTAATCCTGGAAAGAATCGCCCAAAGTTGAT
TAG
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Coding sequence (CDS) from alignment at tig00000010_pilon:1489587..1490839-

>Gchil3938.t1 ID=Gchil3938.t1|Name=Gchil3938.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1164bp|location=Sequence derived from alignment at tig00000010_pilon:1489587..1490839- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGTCAAAGCGTAGGAGGACGTTGGTCGGCTCCGTGTCAAAGAAACC
CCAACCTCCAAATCGCTTTGAAGAGCAATGGAATAAAATTAATCGCACCA
CACAACGGAAGAAGCAGCAGCAAATCCATTCGTCTTCGTCAAATCGTGTA
ATTGACGGTCGAATTGGTGAACAGAATCCAGGTCTTGACGAGCAATCTCG
CTACTTATTTCGTCTGCAGCGCGAACGTGCAAAGCGATCCAAGAAAAGAA
ACCTCTTCTCACTAGACGAAGAGGATCAAATCGATAAAGATGGGAGAGAA
TTCCCCTCTCTTGAAGAAATGGATGAACCCGTACTTTCCGATGCTGGCGA
AGGGTCTGAGATAAGCAATCCTCCTGAAGTTAGTGATCAACCTTTCTTTT
CGGTCAAGAAAAGTGAAGCTAGGCATGATGAACAACAACAGTCAGAACCA
GAACTTCGTTCAAAAAGAGAAGTAATGAACGAAGTCATTGAGAAGAGCAA
AATGTTCAAAACTCTGCGACAGCACATCAAACACCAAACAGACGAGGAAA
CAATGAAATTAGATGAGAAGTTACCGCAGATAATGCACCTGTTGGCCCAG
TCCAACGTACAGCCTTTGAAAACGTCAAAACTCACTCTGAAGCGTATTGA
GAAGAAAATATCCATCTTTGATGATGAAGATCATCAAAGATGGATGTTTT
CTTCTCAATACGCTGGAGGGAAGACGAAAAATTATTTTAGTTATGAAGAC
GTCTACAGACAACTTGCACAGGAAAAGAGAGCGGCACCCTCCGAACGTCT
TTTCACCGAGGAGGAAACAGCACAACGCCAGAAGGAACATTTACAGAAGC
TGGAAGAGCTACGTCAAGCTCGCATGAAGCATCTTGACGATGAAGAAGGG
AAGACAAAAGTGAAAGCCAGTGGTGATGATCTTAATGATAATTTTGGAGA
TTTGCAGTCTGATAGTGAAGAAGACGGGGAAGAACGCGACTCTGAATCCG
ATGCTGAAGGCAATGAAATCGAGAAACAAAATCAAAGCGTCAGAGACCTG
CCTGCTGAATTTCTACTCGCTGTGGAAAGCGATGGTCTGAAGGATATACC
GTTTATGTTCAAAAAAGCACCCCTGAGCGAGGCTGATCTTCAGAAATCGC
CCAAAGTTGATTAG
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