Gchil3917.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3917.t1
Unique NameGchil3917.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length424
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:1387227..1389424 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1183438.GKIL_3047
PFAMsBig_2,CBM26,Cytochrome_CBB3,GSDH,Laminin_G_3,PA14,PSCyt3,PSD2,PSD3,PSD4,PSD5,Ricin_B_lectin,TadE
Max annot lvl2|Bacteria
Evalue4.65e-09
EggNOG OGsCOG2133@1|root,COG2133@2|Bacteria
Descriptionpyrroloquinoline quinone binding
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3917Gchil3917Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 1387227..1389424 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3917.t1Gchil3917.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 1387227..1389424 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3917.t1.start1Gchil3917.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 1387227..1387229 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3917.t1.CDS1Gchil3917.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1387227..1387872 +
Gchil3917.t1.CDS2Gchil3917.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1388637..1388791 +
Gchil3917.t1.CDS3Gchil3917.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1388893..1389341 +
Gchil3917.t1.CDS4Gchil3917.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1389403..1389424 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3917.t1.exon1Gchil3917.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1387227..1387872 +
Gchil3917.t1.exon2Gchil3917.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1388637..1388791 +
Gchil3917.t1.exon3Gchil3917.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1388893..1389341 +
Gchil3917.t1.exon4Gchil3917.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1389403..1389424 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3917.t1.intron1Gchil3917.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000010_pilon 1387873..1388636 +
Gchil3917.t1.intron2Gchil3917.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000010_pilon 1388792..1388892 +
Gchil3917.t1.intron3Gchil3917.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00000010_pilon 1389342..1389402 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3917.t1.stop1Gchil3917.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 1389422..1389424 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3917.t1 ID=Gchil3917.t1|Name=Gchil3917.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=424bp
MKGLLSVFLCCTLISFSFAQTENKKILLKVNLGGGPVNDFVGEDQLMDVE
DFAKNVVRAPIANTDQQEVFQSQRFARGDDFTMRIPVPDGIYSVTLLFAE
TYKKACAPGSRVFDISLGTPISGVTKVIENFDVFQVAGCSSAYGQKFDRV
PSKEGIVVHLTQKAQHPTLSGFIVEGFPVPKSDGSEYKAIARAQSGSHMG
EMGGAGEAGEGEDVAGVHREMLRDVENMLLPAAPSVRFDISSFTPFCNNF
SFPEDIPSISAECLRWEEHELDMLLMYIDLIMVGMDETLARKFYGEIRCL
SRANIQPITYLNAWQVCFTYDYSELIGKLLAKYILEDISLSNPVLPPSSS
RIYSTLPIASKFLYGYTSTASTTPFLFNAFHNYESFRMDDSSTLITSCCK
GCADTNYFVNLGVDNCRLELRRP*
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spliced messenger RNA

>Gchil3917.t1 ID=Gchil3917.t1|Name=Gchil3917.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1272bp|location=Sequence derived from alignment at tig00000010_pilon:1387227..1389424+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGGTTTACTTTCAGTTTTCTTATGCTGCACCTTGATTTCGTTCTC
TTTCGCACAAACAGAGAATAAGAAGATATTGCTTAAGGTGAACCTCGGTG
GAGGACCAGTGAACGATTTTGTTGGCGAGGACCAGCTGATGGATGTGGAA
GATTTCGCCAAGAATGTCGTACGCGCTCCAATTGCAAACACAGATCAACA
GGAGGTGTTTCAATCACAACGTTTTGCTCGTGGAGATGACTTCACAATGC
GAATTCCAGTACCGGACGGCATATACTCGGTCACATTACTTTTCGCCGAA
ACATATAAAAAGGCTTGTGCTCCAGGAAGTCGTGTCTTTGATATTTCTCT
CGGAACTCCAATCTCGGGGGTTACGAAGGTTATAGAAAATTTCGATGTTT
TTCAAGTAGCGGGCTGTTCCTCAGCCTACGGTCAGAAATTTGACAGAGTT
CCTTCAAAGGAGGGCATTGTCGTCCATTTGACCCAAAAGGCTCAGCATCC
AACACTGTCTGGGTTCATTGTTGAGGGCTTTCCTGTTCCTAAGTCTGACG
GCTCTGAATATAAAGCTATTGCTCGTGCCCAGTCAGGGTCTCATATGGGA
GAAATGGGTGGTGCAGGTGAGGCTGGCGAAGGTGAGGATGTAGCAGGGGT
TCACCGCGAAATGCTCAGAGACGTGGAAAACATGCTGCTTCCGGCTGCAC
CTTCCGTACGATTCGACATCAGTAGCTTCACGCCGTTTTGCAACAACTTC
AGTTTTCCGGAAGACATTCCTTCTATTAGTGCGGAGTGCTTGCGATGGGA
GGAACATGAGCTTGACATGTTGCTGATGTACATCGACCTGATCATGGTTG
GAATGGATGAAACCCTGGCAAGAAAATTTTACGGGGAGATAAGATGTCTG
TCTCGTGCAAATATTCAGCCCATAACGTATTTGAACGCTTGGCAAGTTTG
CTTCACGTACGACTATTCCGAGCTCATTGGTAAGCTTCTTGCTAAGTATA
TACTTGAGGACATTAGTTTGTCGAACCCAGTACTCCCTCCATCCTCATCG
CGAATATACAGCACGCTGCCAATAGCCTCAAAGTTCCTATATGGATACAC
AAGTACTGCAAGTACTACTCCCTTCCTGTTTAATGCGTTCCACAACTACG
AATCTTTTCGGATGGACGACTCTTCTACTCTGATAACTTCGTGTTGCAAG
GGATGCGCTGACACCAATTACTTCGTTAATCTTGGTGTCGATAACTGTCG
ATTGGAGCTTCGACGTCCATAG
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protein sequence of Gchil3917.t1

>Gchil3917.t1 ID=Gchil3917.t1|Name=Gchil3917.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=424bp
MKGLLSVFLCCTLISFSFAQTENKKILLKVNLGGGPVNDFVGEDQLMDVE
DFAKNVVRAPIANTDQQEVFQSQRFARGDDFTMRIPVPDGIYSVTLLFAE
TYKKACAPGSRVFDISLGTPISGVTKVIENFDVFQVAGCSSAYGQKFDRV
PSKEGIVVHLTQKAQHPTLSGFIVEGFPVPKSDGSEYKAIARAQSGSHMG
EMGGAGEAGEGEDVAGVHREMLRDVENMLLPAAPSVRFDISSFTPFCNNF
SFPEDIPSISAECLRWEEHELDMLLMYIDLIMVGMDETLARKFYGEIRCL
SRANIQPITYLNAWQVCFTYDYSELIGKLLAKYILEDISLSNPVLPPSSS
RIYSTLPIASKFLYGYTSTASTTPFLFNAFHNYESFRMDDSSTLITSCCK
GCADTNYFVNLGVDNCRLELRRP*
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mRNA from alignment at tig00000010_pilon:1387227..1389424+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3917.t1 ID=Gchil3917.t1|Name=Gchil3917.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2198bp|location=Sequence derived from alignment at tig00000010_pilon:1387227..1389424+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGGGTTTACTTTCAGTTTTCTTATGCTGCACCTTGATTTCGTTCTC
TTTCGCACAAACAGAGAATAAGAAGATATTGCTTAAGGTGAACCTCGGTG
GAGGACCAGTGAACGATTTTGTTGGCGAGGACCAGCTGATGGATGTGGAA
GATTTCGCCAAGAATGTCGTACGCGCTCCAATTGCAAACACAGATCAACA
GGAGGTGTTTCAATCACAACGTTTTGCTCGTGGAGATGACTTCACAATGC
GAATTCCAGTACCGGACGGCATATACTCGGTCACATTACTTTTCGCCGAA
ACATATAAAAAGGCTTGTGCTCCAGGAAGTCGTGTCTTTGATATTTCTCT
CGGAACTCCAATCTCGGGGGTTACGAAGGTTATAGAAAATTTCGATGTTT
TTCAAGTAGCGGGCTGTTCCTCAGCCTACGGTCAGAAATTTGACAGAGTT
CCTTCAAAGGAGGGCATTGTCGTCCATTTGACCCAAAAGGCTCAGCATCC
AACACTGTCTGGGTTCATTGTTGAGGGCTTTCCTGTTCCTAAGTCTGACG
GCTCTGAATATAAAGCTATTGCTCGTGCCCAGTCAGGGTCTCATATGGGA
GAAATGGGTGGTGCAGGTGAGGCTGGCGAAGGTGAGGATGTAGCAGGTAC
GAGTGGTGAAACATCGCAAAATCTTACAGGCTAGCCTTGCCTGCAACAAA
TCAAATTGGTTTCCAGTGATAAATGTATCCACAGAGGGCAATCCGGACGA
ACACGTGCAAAGTACGAATTCTTCGATAACACGGGGATCTCGTGAAAAAG
ACAGAGCTCCGACATACCTTCTCCCAAGCAAGCGTAAAACAGAAGGTTCT
AAAGGAGGCTATCGAGGGACGGAATAACTAAACAGGAAAGTAAGTGTGAA
ACTGTAAGAATTAAAACAATAAATGTCTTGTATCTTCAGGAAAGGGAGTA
GATGTAGGGCAGTCTTCCGAAATAGGTACATTCAAAAGACGCGGCATGCG
TTTCATCACCTTGTCCTTGCGCCCGTTCCCTTAAATTCAATAACTGAATT
ACCCGCTTAAGAACGGCGGTCAAGAAGATCACTTGCTGCATTAGTTGCAT
CACAAACACAAACCCCAGCAGCAGAACTTAACTGCCATCGTACTATGACC
TTATTAAATGCCGGCCGGAGCCAATGCCACAATTCCCGCCGTTGGTGTCG
AAGAACAGGCTACTGCAAGTCAGAGCGCAGTGGTTGAACAGCGAAAAAAG
TATCATCGCCAAACCCCCTGTGTTTACGTGAAACCGGCAAGTATGCGTCT
CTCGTGGACAAAGCCTCTCGGTTTCTTAGTAATTCTTCAGCTTTTCTTTG
CCTTCGCAAGAGGACTGGATTTCAATTCCAACCTGATTTCCGGTATGGAT
GCTCTCTCAGGGGTTCACCGCGAAATGCTCAGAGACGTGGAAAACATGCT
GCTTCCGGCTGCACCTTCCGTACGATTCGACATCAGTAGCTTCACGCCGT
TTTGCAACAACTTCAGTTTTCCGGAAGACATTCCTTCTATTAGTGCGGAG
TGCTTGCGATGGGAGGTAAGTACGCGTGTTCCCACAGCTTGTTCACTACA
TCCTTGAGAGCCAAAGTGAAGAAAATCTGACTGGTCCTGTTCTTCACAAT
TTTTTCCTACCGCAAGGAACATGAGCTTGACATGTTGCTGATGTACATCG
ACCTGATCATGGTTGGAATGGATGAAACCCTGGCAAGAAAATTTTACGGG
GAGATAAGATGTCTGTCTCGTGCAAATATTCAGCCCATAACGTATTTGAA
CGCTTGGCAAGTTTGCTTCACGTACGACTATTCCGAGCTCATTGGTAAGC
TTCTTGCTAAGTATATACTTGAGGACATTAGTTTGTCGAACCCAGTACTC
CCTCCATCCTCATCGCGAATATACAGCACGCTGCCAATAGCCTCAAAGTT
CCTATATGGATACACAAGTACTGCAAGTACTACTCCCTTCCTGTTTAATG
CGTTCCACAACTACGAATCTTTTCGGATGGACGACTCTTCTACTCTGATA
ACTTCGTGTTGCAAGGGATGCGCTGACACCAATTACTTCGTTAATCTTGG
TGTCGATAACTGTCGGTACGACCCATTTGGGAAGCATTGCTGTCATCTTG
CTTGCAAATCACTCTCACATCTTAAGATTGGAGCTTCGACGTCCATAG
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Coding sequence (CDS) from alignment at tig00000010_pilon:1387227..1389424+

>Gchil3917.t1 ID=Gchil3917.t1|Name=Gchil3917.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1272bp|location=Sequence derived from alignment at tig00000010_pilon:1387227..1389424+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGGGTTTACTTTCAGTTTTCTTATGCTGCACCTTGATTTCGTTCTC
TTTCGCACAAACAGAGAATAAGAAGATATTGCTTAAGGTGAACCTCGGTG
GAGGACCAGTGAACGATTTTGTTGGCGAGGACCAGCTGATGGATGTGGAA
GATTTCGCCAAGAATGTCGTACGCGCTCCAATTGCAAACACAGATCAACA
GGAGGTGTTTCAATCACAACGTTTTGCTCGTGGAGATGACTTCACAATGC
GAATTCCAGTACCGGACGGCATATACTCGGTCACATTACTTTTCGCCGAA
ACATATAAAAAGGCTTGTGCTCCAGGAAGTCGTGTCTTTGATATTTCTCT
CGGAACTCCAATCTCGGGGGTTACGAAGGTTATAGAAAATTTCGATGTTT
TTCAAGTAGCGGGCTGTTCCTCAGCCTACGGTCAGAAATTTGACAGAGTT
CCTTCAAAGGAGGGCATTGTCGTCCATTTGACCCAAAAGGCTCAGCATCC
AACACTGTCTGGGTTCATTGTTGAGGGCTTTCCTGTTCCTAAGTCTGACG
GCTCTGAATATAAAGCTATTGCTCGTGCCCAGTCAGGGTCTCATATGGGA
GAAATGGGTGGTGCAGGTGAGGCTGGCGAAGGTGAGGATGTAGCAGGGGT
TCACCGCGAAATGCTCAGAGACGTGGAAAACATGCTGCTTCCGGCTGCAC
CTTCCGTACGATTCGACATCAGTAGCTTCACGCCGTTTTGCAACAACTTC
AGTTTTCCGGAAGACATTCCTTCTATTAGTGCGGAGTGCTTGCGATGGGA
GGAACATGAGCTTGACATGTTGCTGATGTACATCGACCTGATCATGGTTG
GAATGGATGAAACCCTGGCAAGAAAATTTTACGGGGAGATAAGATGTCTG
TCTCGTGCAAATATTCAGCCCATAACGTATTTGAACGCTTGGCAAGTTTG
CTTCACGTACGACTATTCCGAGCTCATTGGTAAGCTTCTTGCTAAGTATA
TACTTGAGGACATTAGTTTGTCGAACCCAGTACTCCCTCCATCCTCATCG
CGAATATACAGCACGCTGCCAATAGCCTCAAAGTTCCTATATGGATACAC
AAGTACTGCAAGTACTACTCCCTTCCTGTTTAATGCGTTCCACAACTACG
AATCTTTTCGGATGGACGACTCTTCTACTCTGATAACTTCGTGTTGCAAG
GGATGCGCTGACACCAATTACTTCGTTAATCTTGGTGTCGATAACTGTCG
ATTGGAGCTTCGACGTCCATAG
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