Gchil3913.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3913.t1
Unique NameGchil3913.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length234
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:1379838..1380539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog159749.K0SEW5
PFAMsTRAM_LAG1_CLN8
Max annot lvl2836|Bacillariophyta
Evalue6.1e-30
EggNOG OGs2CKBG@1|root,2SABS@2759|Eukaryota,2XEX8@2836|Bacillariophyta
DescriptionTLC domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3913Gchil3913Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 1379838..1380539 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3913.t1.stop1Gchil3913.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 1379838..1379840 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3913.t1.CDS1Gchil3913.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1379838..1380539 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3913.t1.exon1Gchil3913.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1379838..1380539 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3913.t1.start1Gchil3913.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 1380537..1380539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3913.t1Gchil3913.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 1379838..1380539 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3913.t1 ID=Gchil3913.t1|Name=Gchil3913.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=234bp
MIHPLDSEIIPPSHAPFVLESARVTWTNLVLAGYLLTDLLHIIAQYPQLG
KMDIVMHHVAFLACAISAGYYSLHPFAFSWLIIGEASTPFLNARWFLIRA
GKGSTRYFRAIEAMFGLVFIITRLFIYSIGSCYHLFTIKYIPSRVPQMTV
MFSASCIVVGFILNMTWLRKMYMMLTGRGKHVTRSQLQESEIHREHQLTP
SNVVSTLGDRLPTEPSSSMRTASTKSPEHTKVE*
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spliced messenger RNA

>Gchil3913.t1 ID=Gchil3913.t1|Name=Gchil3913.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=702bp|location=Sequence derived from alignment at tig00000010_pilon:1379838..1380539- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCATCCGCTGGACAGTGAAATCATCCCGCCATCCCACGCGCCTTT
TGTGCTCGAAAGCGCGCGCGTCACTTGGACCAATTTGGTGCTTGCCGGAT
ACTTGTTAACCGATTTGCTGCATATCATCGCTCAGTACCCGCAACTTGGC
AAGATGGACATTGTAATGCATCACGTAGCATTTTTGGCGTGCGCCATTTC
AGCTGGCTATTACAGTCTTCATCCCTTCGCTTTTAGTTGGTTGATAATAG
GCGAAGCAAGCACGCCGTTTTTGAATGCGAGGTGGTTCTTAATTAGGGCC
GGAAAGGGTTCCACCAGATACTTTCGCGCTATAGAAGCCATGTTCGGACT
CGTTTTCATTATCACTCGTTTGTTTATATATTCTATCGGTTCGTGCTATC
ATTTGTTTACAATCAAGTACATACCAAGTCGAGTTCCGCAAATGACAGTT
ATGTTCTCTGCGTCGTGCATCGTCGTCGGTTTCATCCTTAATATGACATG
GCTCAGAAAAATGTATATGATGCTCACCGGAAGAGGAAAACATGTCACAC
GAAGTCAACTGCAGGAAAGCGAAATTCATCGTGAGCACCAATTAACACCA
TCAAACGTCGTTAGCACCCTCGGTGACAGACTTCCCACAGAGCCTTCGAG
TTCTATGCGCACAGCATCCACCAAATCTCCGGAACACACAAAAGTCGAGT
AG
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protein sequence of Gchil3913.t1

>Gchil3913.t1 ID=Gchil3913.t1|Name=Gchil3913.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=234bp
MIHPLDSEIIPPSHAPFVLESARVTWTNLVLAGYLLTDLLHIIAQYPQLG
KMDIVMHHVAFLACAISAGYYSLHPFAFSWLIIGEASTPFLNARWFLIRA
GKGSTRYFRAIEAMFGLVFIITRLFIYSIGSCYHLFTIKYIPSRVPQMTV
MFSASCIVVGFILNMTWLRKMYMMLTGRGKHVTRSQLQESEIHREHQLTP
SNVVSTLGDRLPTEPSSSMRTASTKSPEHTKVE*
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mRNA from alignment at tig00000010_pilon:1379838..1380539-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3913.t1 ID=Gchil3913.t1|Name=Gchil3913.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=702bp|location=Sequence derived from alignment at tig00000010_pilon:1379838..1380539- (Gracilaria chilensis NLEC103_M9 male)
ATGATTCATCCGCTGGACAGTGAAATCATCCCGCCATCCCACGCGCCTTT
TGTGCTCGAAAGCGCGCGCGTCACTTGGACCAATTTGGTGCTTGCCGGAT
ACTTGTTAACCGATTTGCTGCATATCATCGCTCAGTACCCGCAACTTGGC
AAGATGGACATTGTAATGCATCACGTAGCATTTTTGGCGTGCGCCATTTC
AGCTGGCTATTACAGTCTTCATCCCTTCGCTTTTAGTTGGTTGATAATAG
GCGAAGCAAGCACGCCGTTTTTGAATGCGAGGTGGTTCTTAATTAGGGCC
GGAAAGGGTTCCACCAGATACTTTCGCGCTATAGAAGCCATGTTCGGACT
CGTTTTCATTATCACTCGTTTGTTTATATATTCTATCGGTTCGTGCTATC
ATTTGTTTACAATCAAGTACATACCAAGTCGAGTTCCGCAAATGACAGTT
ATGTTCTCTGCGTCGTGCATCGTCGTCGGTTTCATCCTTAATATGACATG
GCTCAGAAAAATGTATATGATGCTCACCGGAAGAGGAAAACATGTCACAC
GAAGTCAACTGCAGGAAAGCGAAATTCATCGTGAGCACCAATTAACACCA
TCAAACGTCGTTAGCACCCTCGGTGACAGACTTCCCACAGAGCCTTCGAG
TTCTATGCGCACAGCATCCACCAAATCTCCGGAACACACAAAAGTCGAGT
AG
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Coding sequence (CDS) from alignment at tig00000010_pilon:1379838..1380539-

>Gchil3913.t1 ID=Gchil3913.t1|Name=Gchil3913.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=702bp|location=Sequence derived from alignment at tig00000010_pilon:1379838..1380539- (Gracilaria chilensis NLEC103_M9 male)
ATGATTCATCCGCTGGACAGTGAAATCATCCCGCCATCCCACGCGCCTTT
TGTGCTCGAAAGCGCGCGCGTCACTTGGACCAATTTGGTGCTTGCCGGAT
ACTTGTTAACCGATTTGCTGCATATCATCGCTCAGTACCCGCAACTTGGC
AAGATGGACATTGTAATGCATCACGTAGCATTTTTGGCGTGCGCCATTTC
AGCTGGCTATTACAGTCTTCATCCCTTCGCTTTTAGTTGGTTGATAATAG
GCGAAGCAAGCACGCCGTTTTTGAATGCGAGGTGGTTCTTAATTAGGGCC
GGAAAGGGTTCCACCAGATACTTTCGCGCTATAGAAGCCATGTTCGGACT
CGTTTTCATTATCACTCGTTTGTTTATATATTCTATCGGTTCGTGCTATC
ATTTGTTTACAATCAAGTACATACCAAGTCGAGTTCCGCAAATGACAGTT
ATGTTCTCTGCGTCGTGCATCGTCGTCGGTTTCATCCTTAATATGACATG
GCTCAGAAAAATGTATATGATGCTCACCGGAAGAGGAAAACATGTCACAC
GAAGTCAACTGCAGGAAAGCGAAATTCATCGTGAGCACCAATTAACACCA
TCAAACGTCGTTAGCACCCTCGGTGACAGACTTCCCACAGAGCCTTCGAG
TTCTATGCGCACAGCATCCACCAAATCTCCGGAACACACAAAAGTCGAGT
AG
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