Gchil3910.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3910.t1
Unique NameGchil3910.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length517
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:1372576..1374278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3910Gchil3910Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 1372576..1374278 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3910.t1Gchil3910.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 1372576..1374278 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3910.t1.start1Gchil3910.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 1372576..1372578 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3910.t1.CDS1Gchil3910.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1372576..1373677 +
Gchil3910.t1.CDS2Gchil3910.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1373755..1373925 +
Gchil3910.t1.CDS3Gchil3910.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1374001..1374278 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3910.t1.exon1Gchil3910.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1372576..1373677 +
Gchil3910.t1.exon2Gchil3910.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1373755..1373925 +
Gchil3910.t1.exon3Gchil3910.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1374001..1374278 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3910.t1.intron1Gchil3910.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000010_pilon 1373678..1373754 +
Gchil3910.t1.intron2Gchil3910.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000010_pilon 1373926..1374000 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3910.t1.stop1Gchil3910.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 1374276..1374278 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3910.t1 ID=Gchil3910.t1|Name=Gchil3910.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=517bp
MIAILLSCKVHGRKLSDTDVCGKFNIGINLMSPLPGRNCIATLSDPKYEK
RFDVCKSSVCFILKWETPMLQFNRSLTVESADVKYRLPFRCGESSKWHPS
LTGMAIEILLKTSAREEYCVWAGDPNECTWNGLVEYTDAMADRGYQFTIV
GPMLETPGRMCHHFTSTAFLDDPMVVVGRNIPHKKGVGEQILQITSPFTF
GSWIVLGTVVFLFVLVSVIIVYTFHGSRSHSLVTMYLVLVGDQKQALEYS
KPDSVVQEEENKTPLESSSSVGTSSFFDCESLRSRRLHDTQSVSYRQSYF
CTTSLCRFAFLGFLSLFFLFYEAAVVQSLFQQERVTITRSVTSLSDEELR
HFAVMKDSAFEDIWTSTVDPDYTEDWTNKSKVPWQRCPNTKECIEWLTSE
SRDVDYVVSSKSEANFLVHQVSDCEELTITDTKESLHKFNSGWLHNKRVD
KSKRRTFDRELVFLRIDGTVQSFSEELENGKCKPRTKVNIGPFILLAPIV
VLVFPPLILSVIVLYR*
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spliced messenger RNA

>Gchil3910.t1 ID=Gchil3910.t1|Name=Gchil3910.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1551bp|location=Sequence derived from alignment at tig00000010_pilon:1372576..1374278+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGCAATCCTCTTATCTTGCAAAGTTCATGGCCGAAAACTTTCAGA
TACTGATGTCTGCGGCAAGTTCAACATTGGTATAAATCTGATGAGTCCGC
TTCCTGGAAGAAACTGCATCGCCACTCTCTCCGATCCCAAGTATGAAAAA
CGTTTTGATGTTTGTAAATCAAGTGTTTGCTTCATTTTGAAATGGGAAAC
TCCTATGTTGCAGTTTAACAGGTCTTTAACCGTAGAAAGTGCAGATGTGA
AGTATCGATTGCCATTTAGGTGTGGGGAGTCGTCGAAATGGCACCCGTCC
CTCACTGGAATGGCTATCGAGATTCTTTTAAAGACAAGCGCCAGGGAAGA
ATATTGTGTATGGGCTGGCGACCCGAATGAATGTACTTGGAACGGTCTCG
TTGAATATACAGACGCAATGGCGGATCGTGGATACCAATTCACCATTGTT
GGTCCTATGCTGGAGACTCCCGGAAGAATGTGCCACCACTTTACAAGTAC
CGCTTTCCTGGATGACCCCATGGTCGTTGTAGGCCGGAATATACCCCACA
AAAAAGGTGTTGGAGAGCAAATTCTTCAGATTACCAGTCCGTTCACATTT
GGCTCCTGGATCGTACTCGGTACTGTTGTTTTTCTTTTCGTTCTTGTCTC
CGTTATCATTGTCTATACGTTCCATGGTTCTCGTTCTCACAGCTTGGTCA
CCATGTATTTAGTTCTTGTTGGTGATCAAAAGCAAGCTTTGGAATACTCA
AAACCCGACAGCGTGGTTCAGGAGGAAGAAAACAAGACGCCACTTGAAAG
TTCTTCATCAGTCGGTACATCTAGTTTTTTTGATTGTGAAAGCTTACGCT
CCCGGAGGCTTCATGATACGCAGTCGGTTTCTTATCGACAGAGTTATTTT
TGCACGACTTCACTTTGTCGATTCGCGTTCCTTGGATTCCTTTCCCTGTT
CTTTTTGTTCTACGAAGCTGCAGTTGTCCAATCCTTATTCCAACAGGAAC
GAGTAACGATCACTCGAAGCGTGACATCTTTATCCGATGAAGAACTCCGA
CATTTTGCGGTTATGAAAGATTCTGCTTTTGAAGATATATGGACTTCGAC
AGTTGATCCAGACTACACTGAAGATTGGACAAACAAGTCCAAAGTTCCCT
GGCAGCGATGTCCAAATACCAAAGAATGTATCGAATGGTTAACAAGCGAG
TCGCGAGATGTGGACTATGTTGTATCTTCCAAATCGGAAGCGAATTTCTT
AGTCCACCAAGTGTCAGATTGCGAGGAGCTCACGATAACGGATACAAAAG
AAAGCCTTCATAAGTTTAACAGCGGCTGGCTCCATAATAAGAGAGTCGAT
AAGAGCAAGCGCAGAACATTCGACCGTGAGCTTGTATTTTTGCGAATCGA
TGGAACTGTTCAAAGTTTCTCCGAAGAGCTTGAAAACGGAAAATGTAAGC
CACGTACAAAGGTTAACATAGGACCGTTCATATTGCTAGCTCCCATTGTT
GTCCTTGTTTTTCCGCCTCTCATTCTCTCTGTGATAGTACTTTACCGCTG
A
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protein sequence of Gchil3910.t1

>Gchil3910.t1 ID=Gchil3910.t1|Name=Gchil3910.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=517bp
MIAILLSCKVHGRKLSDTDVCGKFNIGINLMSPLPGRNCIATLSDPKYEK
RFDVCKSSVCFILKWETPMLQFNRSLTVESADVKYRLPFRCGESSKWHPS
LTGMAIEILLKTSAREEYCVWAGDPNECTWNGLVEYTDAMADRGYQFTIV
GPMLETPGRMCHHFTSTAFLDDPMVVVGRNIPHKKGVGEQILQITSPFTF
GSWIVLGTVVFLFVLVSVIIVYTFHGSRSHSLVTMYLVLVGDQKQALEYS
KPDSVVQEEENKTPLESSSSVGTSSFFDCESLRSRRLHDTQSVSYRQSYF
CTTSLCRFAFLGFLSLFFLFYEAAVVQSLFQQERVTITRSVTSLSDEELR
HFAVMKDSAFEDIWTSTVDPDYTEDWTNKSKVPWQRCPNTKECIEWLTSE
SRDVDYVVSSKSEANFLVHQVSDCEELTITDTKESLHKFNSGWLHNKRVD
KSKRRTFDRELVFLRIDGTVQSFSEELENGKCKPRTKVNIGPFILLAPIV
VLVFPPLILSVIVLYR*
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mRNA from alignment at tig00000010_pilon:1372576..1374278+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3910.t1 ID=Gchil3910.t1|Name=Gchil3910.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1703bp|location=Sequence derived from alignment at tig00000010_pilon:1372576..1374278+ (Gracilaria chilensis NLEC103_M9 male)
ATGATCGCAATCCTCTTATCTTGCAAAGTTCATGGCCGAAAACTTTCAGA
TACTGATGTCTGCGGCAAGTTCAACATTGGTATAAATCTGATGAGTCCGC
TTCCTGGAAGAAACTGCATCGCCACTCTCTCCGATCCCAAGTATGAAAAA
CGTTTTGATGTTTGTAAATCAAGTGTTTGCTTCATTTTGAAATGGGAAAC
TCCTATGTTGCAGTTTAACAGGTCTTTAACCGTAGAAAGTGCAGATGTGA
AGTATCGATTGCCATTTAGGTGTGGGGAGTCGTCGAAATGGCACCCGTCC
CTCACTGGAATGGCTATCGAGATTCTTTTAAAGACAAGCGCCAGGGAAGA
ATATTGTGTATGGGCTGGCGACCCGAATGAATGTACTTGGAACGGTCTCG
TTGAATATACAGACGCAATGGCGGATCGTGGATACCAATTCACCATTGTT
GGTCCTATGCTGGAGACTCCCGGAAGAATGTGCCACCACTTTACAAGTAC
CGCTTTCCTGGATGACCCCATGGTCGTTGTAGGCCGGAATATACCCCACA
AAAAAGGTGTTGGAGAGCAAATTCTTCAGATTACCAGTCCGTTCACATTT
GGCTCCTGGATCGTACTCGGTACTGTTGTTTTTCTTTTCGTTCTTGTCTC
CGTTATCATTGTCTATACGTTCCATGGTTCTCGTTCTCACAGCTTGGTCA
CCATGTATTTAGTTCTTGTTGGTGATCAAAAGCAAGCTTTGGAATACTCA
AAACCCGACAGCGTGGTTCAGGAGGAAGAAAACAAGACGCCACTTGAAAG
TTCTTCATCAGTCGGTACATCTAGTTTTTTTGATTGTGAAAGCTTACGCT
CCCGGAGGCTTCATGATACGCAGTCGGTTTCTTATCGACAGAGTTATTTT
TGCACGACTTCACTTTGTCGATTCGCGTTCCTTGGATTCCTTTCCCTGTT
CTTTTTGTTCTACGAAGCTGCAGTTGTCCAATCCTTATTCCAACAGGAAC
GAGTAACGATCACTCGAAGCGTGACATCTTTATCCGATGAAGAACTCCGA
CATTTTGCGGTTATGAAAGATTCTGCTTTTGAAGATATATGGACTTCGAC
AGGTAAGTTCATTGGATTTTACTTTGACTGTGTTGACAGTAATCTGACAA
TGCAAACGATGTGTTCTTGGGATCGAAAGTTGATCCAGACTACACTGAAG
ATTGGACAAACAAGTCCAAAGTTCCCTGGCAGCGATGTCCAAATACCAAA
GAATGTATCGAATGGTTAACAAGCGAGTCGCGAGATGTGGACTATGTTGT
ATCTTCCAAATCGGAAGCGAATTTCTTAGTCCACCAAGTGTCAGATTGCG
GTATGTAACAGATCATGCTTTTTCATTTTGTCATGGATTACTGACAAGTC
GTTCTAAACTTCCTTGAACGGACAGAGGAGCTCACGATAACGGATACAAA
AGAAAGCCTTCATAAGTTTAACAGCGGCTGGCTCCATAATAAGAGAGTCG
ATAAGAGCAAGCGCAGAACATTCGACCGTGAGCTTGTATTTTTGCGAATC
GATGGAACTGTTCAAAGTTTCTCCGAAGAGCTTGAAAACGGAAAATGTAA
GCCACGTACAAAGGTTAACATAGGACCGTTCATATTGCTAGCTCCCATTG
TTGTCCTTGTTTTTCCGCCTCTCATTCTCTCTGTGATAGTACTTTACCGC
TGA
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Coding sequence (CDS) from alignment at tig00000010_pilon:1372576..1374278+

>Gchil3910.t1 ID=Gchil3910.t1|Name=Gchil3910.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1551bp|location=Sequence derived from alignment at tig00000010_pilon:1372576..1374278+ (Gracilaria chilensis NLEC103_M9 male)
ATGATCGCAATCCTCTTATCTTGCAAAGTTCATGGCCGAAAACTTTCAGA
TACTGATGTCTGCGGCAAGTTCAACATTGGTATAAATCTGATGAGTCCGC
TTCCTGGAAGAAACTGCATCGCCACTCTCTCCGATCCCAAGTATGAAAAA
CGTTTTGATGTTTGTAAATCAAGTGTTTGCTTCATTTTGAAATGGGAAAC
TCCTATGTTGCAGTTTAACAGGTCTTTAACCGTAGAAAGTGCAGATGTGA
AGTATCGATTGCCATTTAGGTGTGGGGAGTCGTCGAAATGGCACCCGTCC
CTCACTGGAATGGCTATCGAGATTCTTTTAAAGACAAGCGCCAGGGAAGA
ATATTGTGTATGGGCTGGCGACCCGAATGAATGTACTTGGAACGGTCTCG
TTGAATATACAGACGCAATGGCGGATCGTGGATACCAATTCACCATTGTT
GGTCCTATGCTGGAGACTCCCGGAAGAATGTGCCACCACTTTACAAGTAC
CGCTTTCCTGGATGACCCCATGGTCGTTGTAGGCCGGAATATACCCCACA
AAAAAGGTGTTGGAGAGCAAATTCTTCAGATTACCAGTCCGTTCACATTT
GGCTCCTGGATCGTACTCGGTACTGTTGTTTTTCTTTTCGTTCTTGTCTC
CGTTATCATTGTCTATACGTTCCATGGTTCTCGTTCTCACAGCTTGGTCA
CCATGTATTTAGTTCTTGTTGGTGATCAAAAGCAAGCTTTGGAATACTCA
AAACCCGACAGCGTGGTTCAGGAGGAAGAAAACAAGACGCCACTTGAAAG
TTCTTCATCAGTCGGTACATCTAGTTTTTTTGATTGTGAAAGCTTACGCT
CCCGGAGGCTTCATGATACGCAGTCGGTTTCTTATCGACAGAGTTATTTT
TGCACGACTTCACTTTGTCGATTCGCGTTCCTTGGATTCCTTTCCCTGTT
CTTTTTGTTCTACGAAGCTGCAGTTGTCCAATCCTTATTCCAACAGGAAC
GAGTAACGATCACTCGAAGCGTGACATCTTTATCCGATGAAGAACTCCGA
CATTTTGCGGTTATGAAAGATTCTGCTTTTGAAGATATATGGACTTCGAC
AGTTGATCCAGACTACACTGAAGATTGGACAAACAAGTCCAAAGTTCCCT
GGCAGCGATGTCCAAATACCAAAGAATGTATCGAATGGTTAACAAGCGAG
TCGCGAGATGTGGACTATGTTGTATCTTCCAAATCGGAAGCGAATTTCTT
AGTCCACCAAGTGTCAGATTGCGAGGAGCTCACGATAACGGATACAAAAG
AAAGCCTTCATAAGTTTAACAGCGGCTGGCTCCATAATAAGAGAGTCGAT
AAGAGCAAGCGCAGAACATTCGACCGTGAGCTTGTATTTTTGCGAATCGA
TGGAACTGTTCAAAGTTTCTCCGAAGAGCTTGAAAACGGAAAATGTAAGC
CACGTACAAAGGTTAACATAGGACCGTTCATATTGCTAGCTCCCATTGTT
GTCCTTGTTTTTCCGCCTCTCATTCTCTCTGTGATAGTACTTTACCGCTG
A
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