Gchil3889.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3889.t1
Unique NameGchil3889.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length257
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:1266466..1267236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705202.1
Preferred namesap62
PFAMsSF3A2,zf-met
Max annot lvl2759|Eukaryota
KEGG koko:K12826
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0005686,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0071004,GO:0071010,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1990904
Evalue7.52e-98
EggNOG OGsCOG5246@1|root,KOG0227@2759|Eukaryota
Descriptionspliceosomal complex assembly
COG categoryA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3889Gchil3889Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 1266466..1267236 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3889.t1.start1Gchil3889.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 1266466..1266468 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3889.t1.CDS1Gchil3889.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1266466..1267236 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3889.t1.exon1Gchil3889.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1266466..1267236 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3889.t1.stop1Gchil3889.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 1267234..1267236 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3889.t1Gchil3889.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 1266466..1267236 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3889.t1 ID=Gchil3889.t1|Name=Gchil3889.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=257bp
MAYRDWGAKTGGGGVASKEHEALARKQRLRELAMDTVDLKNDPYFMRNHL
GTYECKLCLTLHANEGNYLAHTQGRRHQSNLKRRAARESQKEAAKPRAPI
AYATQTKFDDRLKIGTPGYQITKQKDPDTAQLSLLFQLSYPQIADALQPR
HRFMSAFEQRKEPPDRRYQYLLFAAEPYETVAFKIPNIPIDKTEGRFYTN
WDPEGKTFTLQLFFENSEAHAKTNGSVQEPAVAQKVYNENEASKPKDPFA
GIDHPM*
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spliced messenger RNA

>Gchil3889.t1 ID=Gchil3889.t1|Name=Gchil3889.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=771bp|location=Sequence derived from alignment at tig00000010_pilon:1266466..1267236+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTACCGTGACTGGGGAGCAAAGACCGGAGGTGGTGGAGTCGCCTC
AAAAGAACATGAAGCCCTTGCGAGGAAGCAGCGCCTTCGGGAGCTCGCTA
TGGACACAGTCGACTTGAAGAACGATCCGTACTTTATGAGAAATCATCTT
GGAACATATGAATGCAAGTTATGTCTCACTTTACATGCAAACGAGGGAAA
CTACCTCGCACACACACAAGGCCGACGACATCAAAGCAATTTAAAGCGAA
GAGCAGCAAGAGAGTCTCAGAAAGAAGCAGCCAAACCGCGTGCCCCCATT
GCATACGCCACGCAAACAAAGTTTGACGACCGTCTTAAAATTGGCACACC
TGGCTACCAGATTACCAAACAAAAGGACCCTGATACAGCCCAGCTCAGCT
TACTTTTCCAGCTCTCATATCCCCAAATAGCTGACGCTCTACAGCCGCGT
CACCGATTCATGAGCGCTTTTGAGCAGAGAAAGGAGCCACCAGATCGACG
CTACCAATATCTTCTTTTTGCTGCAGAGCCGTACGAAACTGTAGCATTTA
AGATTCCCAACATCCCTATTGACAAAACAGAGGGAAGGTTCTATACGAAC
TGGGATCCAGAGGGAAAGACTTTCACTCTTCAATTGTTTTTCGAGAACTC
AGAAGCTCATGCCAAAACCAACGGCTCGGTACAAGAACCTGCTGTGGCAC
AAAAAGTCTACAACGAGAATGAGGCGTCAAAGCCAAAGGATCCATTTGCG
GGCATCGACCACCCGATGTAG
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protein sequence of Gchil3889.t1

>Gchil3889.t1 ID=Gchil3889.t1|Name=Gchil3889.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=257bp
MAYRDWGAKTGGGGVASKEHEALARKQRLRELAMDTVDLKNDPYFMRNHL
GTYECKLCLTLHANEGNYLAHTQGRRHQSNLKRRAARESQKEAAKPRAPI
AYATQTKFDDRLKIGTPGYQITKQKDPDTAQLSLLFQLSYPQIADALQPR
HRFMSAFEQRKEPPDRRYQYLLFAAEPYETVAFKIPNIPIDKTEGRFYTN
WDPEGKTFTLQLFFENSEAHAKTNGSVQEPAVAQKVYNENEASKPKDPFA
GIDHPM*
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mRNA from alignment at tig00000010_pilon:1266466..1267236+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3889.t1 ID=Gchil3889.t1|Name=Gchil3889.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=771bp|location=Sequence derived from alignment at tig00000010_pilon:1266466..1267236+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGTACCGTGACTGGGGAGCAAAGACCGGAGGTGGTGGAGTCGCCTC
AAAAGAACATGAAGCCCTTGCGAGGAAGCAGCGCCTTCGGGAGCTCGCTA
TGGACACAGTCGACTTGAAGAACGATCCGTACTTTATGAGAAATCATCTT
GGAACATATGAATGCAAGTTATGTCTCACTTTACATGCAAACGAGGGAAA
CTACCTCGCACACACACAAGGCCGACGACATCAAAGCAATTTAAAGCGAA
GAGCAGCAAGAGAGTCTCAGAAAGAAGCAGCCAAACCGCGTGCCCCCATT
GCATACGCCACGCAAACAAAGTTTGACGACCGTCTTAAAATTGGCACACC
TGGCTACCAGATTACCAAACAAAAGGACCCTGATACAGCCCAGCTCAGCT
TACTTTTCCAGCTCTCATATCCCCAAATAGCTGACGCTCTACAGCCGCGT
CACCGATTCATGAGCGCTTTTGAGCAGAGAAAGGAGCCACCAGATCGACG
CTACCAATATCTTCTTTTTGCTGCAGAGCCGTACGAAACTGTAGCATTTA
AGATTCCCAACATCCCTATTGACAAAACAGAGGGAAGGTTCTATACGAAC
TGGGATCCAGAGGGAAAGACTTTCACTCTTCAATTGTTTTTCGAGAACTC
AGAAGCTCATGCCAAAACCAACGGCTCGGTACAAGAACCTGCTGTGGCAC
AAAAAGTCTACAACGAGAATGAGGCGTCAAAGCCAAAGGATCCATTTGCG
GGCATCGACCACCCGATGTAG
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Coding sequence (CDS) from alignment at tig00000010_pilon:1266466..1267236+

>Gchil3889.t1 ID=Gchil3889.t1|Name=Gchil3889.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=771bp|location=Sequence derived from alignment at tig00000010_pilon:1266466..1267236+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGTACCGTGACTGGGGAGCAAAGACCGGAGGTGGTGGAGTCGCCTC
AAAAGAACATGAAGCCCTTGCGAGGAAGCAGCGCCTTCGGGAGCTCGCTA
TGGACACAGTCGACTTGAAGAACGATCCGTACTTTATGAGAAATCATCTT
GGAACATATGAATGCAAGTTATGTCTCACTTTACATGCAAACGAGGGAAA
CTACCTCGCACACACACAAGGCCGACGACATCAAAGCAATTTAAAGCGAA
GAGCAGCAAGAGAGTCTCAGAAAGAAGCAGCCAAACCGCGTGCCCCCATT
GCATACGCCACGCAAACAAAGTTTGACGACCGTCTTAAAATTGGCACACC
TGGCTACCAGATTACCAAACAAAAGGACCCTGATACAGCCCAGCTCAGCT
TACTTTTCCAGCTCTCATATCCCCAAATAGCTGACGCTCTACAGCCGCGT
CACCGATTCATGAGCGCTTTTGAGCAGAGAAAGGAGCCACCAGATCGACG
CTACCAATATCTTCTTTTTGCTGCAGAGCCGTACGAAACTGTAGCATTTA
AGATTCCCAACATCCCTATTGACAAAACAGAGGGAAGGTTCTATACGAAC
TGGGATCCAGAGGGAAAGACTTTCACTCTTCAATTGTTTTTCGAGAACTC
AGAAGCTCATGCCAAAACCAACGGCTCGGTACAAGAACCTGCTGTGGCAC
AAAAAGTCTACAACGAGAATGAGGCGTCAAAGCCAAAGGATCCATTTGCG
GGCATCGACCACCCGATGTAG
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