Gchil3886.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3886.t1
Unique NameGchil3886.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length313
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:1211425..1213107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3886Gchil3886Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 1211425..1213107 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3886.t1Gchil3886.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 1211425..1213107 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3886.t1.stop1Gchil3886.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 1211425..1211427 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3886.t1.CDS1Gchil3886.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1211425..1211690 -
Gchil3886.t1.CDS2Gchil3886.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1212435..1213107 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3886.t1.exon1Gchil3886.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1211425..1211690 -
Gchil3886.t1.exon2Gchil3886.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1212435..1213107 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3886.t1.intron1Gchil3886.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000010_pilon 1211691..1212434 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3886.t1.start1Gchil3886.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 1213105..1213107 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3886.t1 ID=Gchil3886.t1|Name=Gchil3886.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=313bp
MIQSVPCELGGRAGTTCLMPSPHSGEAETVSSGADIPACLRISPKLLDDV
STTEDPEYKNGRHGYEFGSPIAKRACLEQNREIPGETTVGRTKEKEVERM
NVLPPTSATFMASSHFQDIISVSSGESDIIFVRSLSESLEQISMDESGDR
SADLESVFGILPSYHDSSEEEEGTSEESYSNCILGTSFNGTVTAYSPTSG
KILATFPLERDFPPSGAREQAPAIERFLKMERIDSIGGSKQLLVIQNNDR
DTVAISSFDYQRNAHRSLSLFNDKVSGIVKNCGAMPLILECVSCASASKG
IDEISMYEGDSP*
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spliced messenger RNA

>Gchil3886.t1 ID=Gchil3886.t1|Name=Gchil3886.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=939bp|location=Sequence derived from alignment at tig00000010_pilon:1211425..1213107- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCAAAGTGTTCCATGTGAACTTGGAGGTCGCGCTGGAACTACCTG
TTTAATGCCCTCGCCTCATTCTGGAGAAGCCGAAACGGTATCATCTGGTG
CTGATATTCCAGCATGTCTTAGGATTTCTCCAAAGCTCTTGGACGATGTA
TCTACTACAGAAGATCCAGAATACAAAAATGGAAGACATGGCTATGAGTT
TGGATCACCAATCGCCAAACGTGCATGTCTGGAACAGAATCGAGAGATTC
CTGGGGAAACTACTGTCGGTCGCACGAAGGAAAAAGAAGTGGAGAGGATG
AACGTTTTACCTCCTACGTCTGCTACGTTTATGGCTTCTTCTCATTTCCA
AGATATAATATCTGTGTCATCTGGCGAAAGTGATATAATATTTGTGCGCA
GCTTGTCGGAGAGTTTGGAACAAATATCGATGGACGAGTCTGGGGACAGA
AGTGCAGATCTTGAAAGTGTGTTTGGAATACTGCCATCATACCATGATTC
GTCAGAAGAGGAAGAAGGTACATCTGAAGAATCTTATTCCAATTGCATTC
TGGGTACATCATTCAATGGAACAGTGACCGCATACTCCCCTACGTCCGGG
AAAATACTAGCCACTTTCCCTCTTGAGAGAGATTTTCCTCCATCTGGAGC
TCGAGAACAAGCGCCTGCGATAGAAAGATTCTTGAAGATGGAGAGAATTG
ATTCTATTGGCGGTTCGAAGCAGCTGCTGGTAATTCAGAACAATGATCGC
GATACAGTTGCGATTTCAAGCTTTGATTACCAGCGTAACGCGCATCGATC
TTTATCTCTTTTTAATGATAAGGTATCGGGCATAGTGAAAAATTGCGGAG
CCATGCCGCTCATCCTGGAATGCGTTTCTTGTGCTTCTGCATCGAAAGGT
ATAGATGAGATTAGCATGTACGAGGGAGATTCGCCTTAA
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protein sequence of Gchil3886.t1

>Gchil3886.t1 ID=Gchil3886.t1|Name=Gchil3886.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=313bp
MIQSVPCELGGRAGTTCLMPSPHSGEAETVSSGADIPACLRISPKLLDDV
STTEDPEYKNGRHGYEFGSPIAKRACLEQNREIPGETTVGRTKEKEVERM
NVLPPTSATFMASSHFQDIISVSSGESDIIFVRSLSESLEQISMDESGDR
SADLESVFGILPSYHDSSEEEEGTSEESYSNCILGTSFNGTVTAYSPTSG
KILATFPLERDFPPSGAREQAPAIERFLKMERIDSIGGSKQLLVIQNNDR
DTVAISSFDYQRNAHRSLSLFNDKVSGIVKNCGAMPLILECVSCASASKG
IDEISMYEGDSP*
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mRNA from alignment at tig00000010_pilon:1211425..1213107-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3886.t1 ID=Gchil3886.t1|Name=Gchil3886.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1683bp|location=Sequence derived from alignment at tig00000010_pilon:1211425..1213107- (Gracilaria chilensis NLEC103_M9 male)
ATGATTCAAAGTGTTCCATGTGAACTTGGAGGTCGCGCTGGAACTACCTG
TTTAATGCCCTCGCCTCATTCTGGAGAAGCCGAAACGGTATCATCTGGTG
CTGATATTCCAGCATGTCTTAGGATTTCTCCAAAGCTCTTGGACGATGTA
TCTACTACAGAAGATCCAGAATACAAAAATGGAAGACATGGCTATGAGTT
TGGATCACCAATCGCCAAACGTGCATGTCTGGAACAGAATCGAGAGATTC
CTGGGGAAACTACTGTCGGTCGCACGAAGGAAAAAGAAGTGGAGAGGATG
AACGTTTTACCTCCTACGTCTGCTACGTTTATGGCTTCTTCTCATTTCCA
AGATATAATATCTGTGTCATCTGGCGAAAGTGATATAATATTTGTGCGCA
GCTTGTCGGAGAGTTTGGAACAAATATCGATGGACGAGTCTGGGGACAGA
AGTGCAGATCTTGAAAGTGTGTTTGGAATACTGCCATCATACCATGATTC
GTCAGAAGAGGAAGAAGGTACATCTGAAGAATCTTATTCCAATTGCATTC
TGGGTACATCATTCAATGGAACAGTGACCGCATACTCCCCTACGTCCGGG
AAAATACTAGCCACTTTCCCTCTTGAGAGAGATTTTCCTCCATCTGGAGC
TCGAGAACAAGCGCCTGCGATAGGTACATCAGATTTTTCGAAAGCCGTAC
CCACAACAATCGAGGAAGACAAAGAGGAGAAAGCTTTAAATGAATTTGGA
GCGCCATTTCAACACAGTCTGGTGCCGGGCAGGATCCAAAAAGAATGCAA
GGACATCAATACGGAATGCATTTCCCGTACATCATTGTATGGAACGTCAA
AACTCTCTCCGATGAGGTGGGAACAAATGCCATGGGAACAGGATCAGGAA
ACGATTTCTCTCTTTGGTTTATCACTACCATTGCCAAGAGTTCATTCGGC
TGTGTCTGCTGAGAACCAGGAATTCTTCTCTGCTGATGCTCTGAGCACAT
CATTGAACCGAAAATTAGATTTCTGCCCGAGGTCTATGGATTGTTTAACA
AAGAGAAGAACTCCGAGGAAAAGCACTATAGTTGCCTTGGCCTTATTTGG
GATGTTGATTTTGAGTCTCCTTCCCCCCGACAGAAACTGTCTCTTAGACT
GGAGAAGGAATGATATAGGAACACAGTTTTGTAACGATGCCAACTGTGTA
TTATAAAGTTTTTCTCTTTCCTGCTGCATGTTATTTCGCTACATAGTATC
TCTTCACATCCATCCCAGATAGAGATATGAGGACAAGTTGGTATTCATTT
CAGCATATTTTCTGCTACATCTGGGGTCGTCTACGTTCATGATGAAGTCT
GCTCATGACAGAAATGTTCATCTTCAAGACGTTTACTTGAGTTCAGCTCA
GAAAACTCTTGTAATAGAAAGATTCTTGAAGATGGAGAGAATTGATTCTA
TTGGCGGTTCGAAGCAGCTGCTGGTAATTCAGAACAATGATCGCGATACA
GTTGCGATTTCAAGCTTTGATTACCAGCGTAACGCGCATCGATCTTTATC
TCTTTTTAATGATAAGGTATCGGGCATAGTGAAAAATTGCGGAGCCATGC
CGCTCATCCTGGAATGCGTTTCTTGTGCTTCTGCATCGAAAGGTATAGAT
GAGATTAGCATGTACGAGGGAGATTCGCCTTAA
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Coding sequence (CDS) from alignment at tig00000010_pilon:1211425..1213107-

>Gchil3886.t1 ID=Gchil3886.t1|Name=Gchil3886.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=939bp|location=Sequence derived from alignment at tig00000010_pilon:1211425..1213107- (Gracilaria chilensis NLEC103_M9 male)
ATGATTCAAAGTGTTCCATGTGAACTTGGAGGTCGCGCTGGAACTACCTG
TTTAATGCCCTCGCCTCATTCTGGAGAAGCCGAAACGGTATCATCTGGTG
CTGATATTCCAGCATGTCTTAGGATTTCTCCAAAGCTCTTGGACGATGTA
TCTACTACAGAAGATCCAGAATACAAAAATGGAAGACATGGCTATGAGTT
TGGATCACCAATCGCCAAACGTGCATGTCTGGAACAGAATCGAGAGATTC
CTGGGGAAACTACTGTCGGTCGCACGAAGGAAAAAGAAGTGGAGAGGATG
AACGTTTTACCTCCTACGTCTGCTACGTTTATGGCTTCTTCTCATTTCCA
AGATATAATATCTGTGTCATCTGGCGAAAGTGATATAATATTTGTGCGCA
GCTTGTCGGAGAGTTTGGAACAAATATCGATGGACGAGTCTGGGGACAGA
AGTGCAGATCTTGAAAGTGTGTTTGGAATACTGCCATCATACCATGATTC
GTCAGAAGAGGAAGAAGGTACATCTGAAGAATCTTATTCCAATTGCATTC
TGGGTACATCATTCAATGGAACAGTGACCGCATACTCCCCTACGTCCGGG
AAAATACTAGCCACTTTCCCTCTTGAGAGAGATTTTCCTCCATCTGGAGC
TCGAGAACAAGCGCCTGCGATAGAAAGATTCTTGAAGATGGAGAGAATTG
ATTCTATTGGCGGTTCGAAGCAGCTGCTGGTAATTCAGAACAATGATCGC
GATACAGTTGCGATTTCAAGCTTTGATTACCAGCGTAACGCGCATCGATC
TTTATCTCTTTTTAATGATAAGGTATCGGGCATAGTGAAAAATTGCGGAG
CCATGCCGCTCATCCTGGAATGCGTTTCTTGTGCTTCTGCATCGAAAGGT
ATAGATGAGATTAGCATGTACGAGGGAGATTCGCCTTAA
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