Gchil3875.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3875.t1
Unique NameGchil3875.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length131
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:1138056..1138520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3875Gchil3875Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 1138056..1138520 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3875.t1Gchil3875.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 1138056..1138520 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3875.t1.stop1Gchil3875.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 1138056..1138058 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3875.t1.CDS1Gchil3875.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1138056..1138366 -
Gchil3875.t1.CDS2Gchil3875.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1138439..1138520 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3875.t1.exon1Gchil3875.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1138056..1138366 -
Gchil3875.t1.exon2Gchil3875.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1138439..1138520 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3875.t1.intron1Gchil3875.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000010_pilon 1138367..1138438 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3875.t1.start1Gchil3875.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 1138518..1138520 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3875.t1 ID=Gchil3875.t1|Name=Gchil3875.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=131bp
MVIQKSGRRVGRGRGRGRGRDRRSRRNDRRKDFYQRTRQEQLDYEMDLLR
AQREGREEEFKKEAQEQLRARRAAALDAEMDEYFSKRNEKGEENGEQDSV
PEKDDSKKGEEEEVPKPEEDTKPTEETKES*
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spliced messenger RNA

>Gchil3875.t1 ID=Gchil3875.t1|Name=Gchil3875.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=393bp|location=Sequence derived from alignment at tig00000010_pilon:1138056..1138520- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCATTCAAAAGTCTGGACGCCGCGTGGGTCGCGGTCGAGGCCGTGG
ACGTGGACGTGACCGTAGATCAAGGCGAAACGACCGCCGTAAGGACTTCT
ATCAGCGAACTCGCCAAGAGCAGCTGGACTATGAGATGGATCTTTTGCGA
GCGCAACGCGAGGGACGCGAGGAGGAATTTAAGAAGGAGGCTCAGGAGCA
GTTGCGTGCTAGACGCGCTGCTGCGTTGGACGCTGAGATGGATGAGTATT
TCAGTAAACGCAACGAAAAGGGAGAAGAGAACGGCGAACAGGATTCGGTT
CCGGAGAAGGATGATTCCAAAAAGGGTGAAGAGGAAGAAGTCCCAAAACC
AGAAGAGGATACCAAGCCTACAGAGGAGACGAAAGAGTCATGA
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protein sequence of Gchil3875.t1

>Gchil3875.t1 ID=Gchil3875.t1|Name=Gchil3875.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=131bp
MVIQKSGRRVGRGRGRGRGRDRRSRRNDRRKDFYQRTRQEQLDYEMDLLR
AQREGREEEFKKEAQEQLRARRAAALDAEMDEYFSKRNEKGEENGEQDSV
PEKDDSKKGEEEEVPKPEEDTKPTEETKES*
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mRNA from alignment at tig00000010_pilon:1138056..1138520-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3875.t1 ID=Gchil3875.t1|Name=Gchil3875.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=465bp|location=Sequence derived from alignment at tig00000010_pilon:1138056..1138520- (Gracilaria chilensis NLEC103_M9 male)
ATGGTCATTCAAAAGTCTGGACGCCGCGTGGGTCGCGGTCGAGGCCGTGG
ACGTGGACGTGACCGTAGATCAAGGCGAAACGGTACGCAGCACACTTTTC
AAGTTCCCCAGCTAAGCTCGATTCAGAATTTTTGTCCACTCTAACACACT
GCAGACCGCCGTAAGGACTTCTATCAGCGAACTCGCCAAGAGCAGCTGGA
CTATGAGATGGATCTTTTGCGAGCGCAACGCGAGGGACGCGAGGAGGAAT
TTAAGAAGGAGGCTCAGGAGCAGTTGCGTGCTAGACGCGCTGCTGCGTTG
GACGCTGAGATGGATGAGTATTTCAGTAAACGCAACGAAAAGGGAGAAGA
GAACGGCGAACAGGATTCGGTTCCGGAGAAGGATGATTCCAAAAAGGGTG
AAGAGGAAGAAGTCCCAAAACCAGAAGAGGATACCAAGCCTACAGAGGAG
ACGAAAGAGTCATGA
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Coding sequence (CDS) from alignment at tig00000010_pilon:1138056..1138520-

>Gchil3875.t1 ID=Gchil3875.t1|Name=Gchil3875.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=393bp|location=Sequence derived from alignment at tig00000010_pilon:1138056..1138520- (Gracilaria chilensis NLEC103_M9 male)
ATGGTCATTCAAAAGTCTGGACGCCGCGTGGGTCGCGGTCGAGGCCGTGG
ACGTGGACGTGACCGTAGATCAAGGCGAAACGACCGCCGTAAGGACTTCT
ATCAGCGAACTCGCCAAGAGCAGCTGGACTATGAGATGGATCTTTTGCGA
GCGCAACGCGAGGGACGCGAGGAGGAATTTAAGAAGGAGGCTCAGGAGCA
GTTGCGTGCTAGACGCGCTGCTGCGTTGGACGCTGAGATGGATGAGTATT
TCAGTAAACGCAACGAAAAGGGAGAAGAGAACGGCGAACAGGATTCGGTT
CCGGAGAAGGATGATTCCAAAAAGGGTGAAGAGGAAGAAGTCCCAAAACC
AGAAGAGGATACCAAGCCTACAGAGGAGACGAAAGAGTCATGA
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