Gchil3872.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3872.t1
Unique NameGchil3872.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length410
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:1129224..1130453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog9305.ENSSHAP00000010015
Preferred nameACCS
PFAMsAminotran_1_2,Myb_DNA-bind_4
Max annot lvl33208|Metazoa
GOsGO:0003674,GO:0005488,GO:0005515,GO:0008144,GO:0019842,GO:0030170,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0046983,GO:0048037,GO:0050662,GO:0070279,GO:0097159,GO:1901363
Evalue1.68e-62
EggNOG OGsCOG0436@1|root,KOG0256@2759|Eukaryota,38FSK@33154|Opisthokonta,3BJ3Z@33208|Metazoa,3CT5F@33213|Bilateria,48ANU@7711|Chordata,495SM@7742|Vertebrata,3JAC1@40674|Mammalia,4K7H4@9263|Metatheria
Description1-aminocyclopropane-1-carboxylate synthase homolog
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3872Gchil3872Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 1129224..1130453 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3872.t1.stop1Gchil3872.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 1129224..1129226 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3872.t1.CDS1Gchil3872.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1129224..1130453 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3872.t1.exon1Gchil3872.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1129224..1130453 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3872.t1.start1Gchil3872.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 1130451..1130453 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3872.t1Gchil3872.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 1129224..1130453 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3872.t1 ID=Gchil3872.t1|Name=Gchil3872.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=410bp
MALSLRASNINCPFLPHFKGFAVPPYDRQLRPHGAIWLFVAENTLSLPLV
CDALNELPVIPPNVLSPSPRTHHPIPELEEQLQDFFSTQISHSPVDRKGF
SIHNGASGAIDVLAFSLCDPDEAVILTAPGYSSLTRDVGALSFVQPVLAH
FPDHNPVLNVETLDAALKSSRKRIRFALILSPDNPSGLIWSPKLISQLAS
WAEQNQIHIVFDEAYALCVHDPTAVFTSVIDVFEGKLPSHVHVVWTTSKD
FGTGGIRFGVLYTQNKELQKCASVLSSAAPVSFISQWSFANLLSRKMWLN
GYVQENSRRLLCAFERVASVLNSLDIPYCKPQAGFFVWIDLRKWLKTPTY
ESEMQLWETLKDGGIILTPGNGCYGGSPGFFRFCFASVDNDTLTVGLQRF
VKVLGGHSA*
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spliced messenger RNA

>Gchil3872.t1 ID=Gchil3872.t1|Name=Gchil3872.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1230bp|location=Sequence derived from alignment at tig00000010_pilon:1129224..1130453- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCTTTCGTTGCGCGCATCAAACATAAACTGTCCTTTTCTACCACA
TTTTAAGGGCTTTGCCGTTCCGCCTTATGATCGACAACTACGTCCCCATG
GTGCCATATGGCTTTTTGTTGCTGAAAACACCCTCTCACTCCCACTCGTT
TGCGATGCTCTCAATGAGCTTCCGGTTATCCCGCCGAACGTGCTTTCTCC
ATCTCCCAGAACACACCATCCTATTCCAGAGCTTGAGGAACAACTCCAAG
ACTTCTTCTCTACGCAAATTTCTCACAGCCCCGTCGACCGAAAGGGCTTC
TCCATTCATAACGGTGCAAGTGGGGCCATAGACGTGTTGGCTTTCTCTTT
GTGCGACCCAGATGAAGCAGTCATTTTGACTGCACCAGGATATTCTTCCC
TTACCCGTGATGTGGGCGCTTTGTCTTTTGTTCAGCCAGTTCTAGCGCAC
TTCCCAGATCATAACCCGGTGCTCAACGTTGAGACGCTTGATGCTGCTCT
GAAGTCTAGCCGAAAACGCATTCGGTTCGCTCTAATCCTTTCACCGGATA
ACCCTAGTGGTCTCATTTGGTCACCCAAGCTGATTTCACAGCTCGCGTCC
TGGGCGGAGCAGAATCAGATTCATATTGTTTTTGACGAAGCTTACGCACT
TTGTGTTCATGATCCCACAGCAGTATTCACCAGCGTTATAGACGTGTTTG
AAGGCAAACTTCCATCTCATGTTCATGTCGTGTGGACAACCTCGAAAGAT
TTTGGGACAGGTGGGATACGTTTTGGGGTGCTCTATACTCAAAATAAAGA
GCTGCAGAAGTGCGCATCTGTACTTTCCTCCGCAGCACCTGTTTCATTCA
TCTCGCAATGGAGTTTTGCGAATCTGCTTTCAAGAAAAATGTGGCTGAAT
GGCTATGTTCAAGAAAACTCACGTCGATTACTTTGTGCCTTCGAAAGAGT
AGCTAGTGTGCTCAACAGTTTAGATATCCCATACTGTAAGCCACAGGCGG
GTTTCTTTGTTTGGATTGACCTGAGAAAGTGGTTAAAAACTCCAACTTAC
GAAAGTGAAATGCAACTTTGGGAAACTCTGAAAGACGGCGGTATCATTCT
TACCCCTGGAAATGGATGCTACGGAGGTAGTCCTGGGTTTTTCCGGTTTT
GTTTCGCATCGGTAGACAACGACACATTGACTGTTGGCCTGCAACGCTTT
GTAAAGGTTCTAGGAGGACATTCAGCTTGA
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protein sequence of Gchil3872.t1

>Gchil3872.t1 ID=Gchil3872.t1|Name=Gchil3872.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=410bp
MALSLRASNINCPFLPHFKGFAVPPYDRQLRPHGAIWLFVAENTLSLPLV
CDALNELPVIPPNVLSPSPRTHHPIPELEEQLQDFFSTQISHSPVDRKGF
SIHNGASGAIDVLAFSLCDPDEAVILTAPGYSSLTRDVGALSFVQPVLAH
FPDHNPVLNVETLDAALKSSRKRIRFALILSPDNPSGLIWSPKLISQLAS
WAEQNQIHIVFDEAYALCVHDPTAVFTSVIDVFEGKLPSHVHVVWTTSKD
FGTGGIRFGVLYTQNKELQKCASVLSSAAPVSFISQWSFANLLSRKMWLN
GYVQENSRRLLCAFERVASVLNSLDIPYCKPQAGFFVWIDLRKWLKTPTY
ESEMQLWETLKDGGIILTPGNGCYGGSPGFFRFCFASVDNDTLTVGLQRF
VKVLGGHSA*
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mRNA from alignment at tig00000010_pilon:1129224..1130453-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3872.t1 ID=Gchil3872.t1|Name=Gchil3872.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1230bp|location=Sequence derived from alignment at tig00000010_pilon:1129224..1130453- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCTTTCGTTGCGCGCATCAAACATAAACTGTCCTTTTCTACCACA
TTTTAAGGGCTTTGCCGTTCCGCCTTATGATCGACAACTACGTCCCCATG
GTGCCATATGGCTTTTTGTTGCTGAAAACACCCTCTCACTCCCACTCGTT
TGCGATGCTCTCAATGAGCTTCCGGTTATCCCGCCGAACGTGCTTTCTCC
ATCTCCCAGAACACACCATCCTATTCCAGAGCTTGAGGAACAACTCCAAG
ACTTCTTCTCTACGCAAATTTCTCACAGCCCCGTCGACCGAAAGGGCTTC
TCCATTCATAACGGTGCAAGTGGGGCCATAGACGTGTTGGCTTTCTCTTT
GTGCGACCCAGATGAAGCAGTCATTTTGACTGCACCAGGATATTCTTCCC
TTACCCGTGATGTGGGCGCTTTGTCTTTTGTTCAGCCAGTTCTAGCGCAC
TTCCCAGATCATAACCCGGTGCTCAACGTTGAGACGCTTGATGCTGCTCT
GAAGTCTAGCCGAAAACGCATTCGGTTCGCTCTAATCCTTTCACCGGATA
ACCCTAGTGGTCTCATTTGGTCACCCAAGCTGATTTCACAGCTCGCGTCC
TGGGCGGAGCAGAATCAGATTCATATTGTTTTTGACGAAGCTTACGCACT
TTGTGTTCATGATCCCACAGCAGTATTCACCAGCGTTATAGACGTGTTTG
AAGGCAAACTTCCATCTCATGTTCATGTCGTGTGGACAACCTCGAAAGAT
TTTGGGACAGGTGGGATACGTTTTGGGGTGCTCTATACTCAAAATAAAGA
GCTGCAGAAGTGCGCATCTGTACTTTCCTCCGCAGCACCTGTTTCATTCA
TCTCGCAATGGAGTTTTGCGAATCTGCTTTCAAGAAAAATGTGGCTGAAT
GGCTATGTTCAAGAAAACTCACGTCGATTACTTTGTGCCTTCGAAAGAGT
AGCTAGTGTGCTCAACAGTTTAGATATCCCATACTGTAAGCCACAGGCGG
GTTTCTTTGTTTGGATTGACCTGAGAAAGTGGTTAAAAACTCCAACTTAC
GAAAGTGAAATGCAACTTTGGGAAACTCTGAAAGACGGCGGTATCATTCT
TACCCCTGGAAATGGATGCTACGGAGGTAGTCCTGGGTTTTTCCGGTTTT
GTTTCGCATCGGTAGACAACGACACATTGACTGTTGGCCTGCAACGCTTT
GTAAAGGTTCTAGGAGGACATTCAGCTTGA
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Coding sequence (CDS) from alignment at tig00000010_pilon:1129224..1130453-

>Gchil3872.t1 ID=Gchil3872.t1|Name=Gchil3872.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1230bp|location=Sequence derived from alignment at tig00000010_pilon:1129224..1130453- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCTTTCGTTGCGCGCATCAAACATAAACTGTCCTTTTCTACCACA
TTTTAAGGGCTTTGCCGTTCCGCCTTATGATCGACAACTACGTCCCCATG
GTGCCATATGGCTTTTTGTTGCTGAAAACACCCTCTCACTCCCACTCGTT
TGCGATGCTCTCAATGAGCTTCCGGTTATCCCGCCGAACGTGCTTTCTCC
ATCTCCCAGAACACACCATCCTATTCCAGAGCTTGAGGAACAACTCCAAG
ACTTCTTCTCTACGCAAATTTCTCACAGCCCCGTCGACCGAAAGGGCTTC
TCCATTCATAACGGTGCAAGTGGGGCCATAGACGTGTTGGCTTTCTCTTT
GTGCGACCCAGATGAAGCAGTCATTTTGACTGCACCAGGATATTCTTCCC
TTACCCGTGATGTGGGCGCTTTGTCTTTTGTTCAGCCAGTTCTAGCGCAC
TTCCCAGATCATAACCCGGTGCTCAACGTTGAGACGCTTGATGCTGCTCT
GAAGTCTAGCCGAAAACGCATTCGGTTCGCTCTAATCCTTTCACCGGATA
ACCCTAGTGGTCTCATTTGGTCACCCAAGCTGATTTCACAGCTCGCGTCC
TGGGCGGAGCAGAATCAGATTCATATTGTTTTTGACGAAGCTTACGCACT
TTGTGTTCATGATCCCACAGCAGTATTCACCAGCGTTATAGACGTGTTTG
AAGGCAAACTTCCATCTCATGTTCATGTCGTGTGGACAACCTCGAAAGAT
TTTGGGACAGGTGGGATACGTTTTGGGGTGCTCTATACTCAAAATAAAGA
GCTGCAGAAGTGCGCATCTGTACTTTCCTCCGCAGCACCTGTTTCATTCA
TCTCGCAATGGAGTTTTGCGAATCTGCTTTCAAGAAAAATGTGGCTGAAT
GGCTATGTTCAAGAAAACTCACGTCGATTACTTTGTGCCTTCGAAAGAGT
AGCTAGTGTGCTCAACAGTTTAGATATCCCATACTGTAAGCCACAGGCGG
GTTTCTTTGTTTGGATTGACCTGAGAAAGTGGTTAAAAACTCCAACTTAC
GAAAGTGAAATGCAACTTTGGGAAACTCTGAAAGACGGCGGTATCATTCT
TACCCCTGGAAATGGATGCTACGGAGGTAGTCCTGGGTTTTTCCGGTTTT
GTTTCGCATCGGTAGACAACGACACATTGACTGTTGGCCTGCAACGCTTT
GTAAAGGTTCTAGGAGGACATTCAGCTTGA
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