Gchil3868.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3868.t1
Unique NameGchil3868.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length223
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:1123107..1123775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7G8Q7
PFAMsFKBP_C
Max annot lvl2759|Eukaryota
KEGG koko:K01802
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009532,GO:0009534,GO:0009536,GO:0009543,GO:0009570,GO:0009579,GO:0031976,GO:0031977,GO:0031978,GO:0031984,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464
Evalue5.16e-33
EggNOG OGsCOG0545@1|root,KOG0552@2759|Eukaryota
EC5.2.1.8
Descriptionhistone peptidyl-prolyl isomerization
COG categoryO
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3868Gchil3868Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 1123107..1123775 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3868.t1.stop1Gchil3868.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 1123107..1123109 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3868.t1.CDS1Gchil3868.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1123107..1123775 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3868.t1.exon1Gchil3868.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1123107..1123775 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3868.t1.start1Gchil3868.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 1123773..1123775 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3868.t1Gchil3868.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 1123107..1123775 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3868.t1 ID=Gchil3868.t1|Name=Gchil3868.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=223bp
MDKSHKQELNPPLLSRRAAIRLLFSLPVLPALAEVEKEKEDGDPTQITGF
QTGSGLKFFDIVVGEGPTPQWGDIVNIHFVLYTISLSGETLVKQESTYDR
GEQGYLIHHGNGEHVLGLEEALHTMRVGGKRRAIVPLKVGYSKTGFAPIP
LSFRKRKAFLDAVNSGDGTVVFDIELRTISKDPDDRGYYTDITPTAEEII
KIFEEQRGVGVEDVDPSKRFTV*
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spliced messenger RNA

>Gchil3868.t1 ID=Gchil3868.t1|Name=Gchil3868.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=669bp|location=Sequence derived from alignment at tig00000010_pilon:1123107..1123775- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAAAAGTCACAAACAAGAACTAAACCCTCCCCTTCTTTCTAGAAG
GGCGGCCATCCGTCTCTTGTTTTCGTTGCCAGTATTACCGGCTCTTGCGG
AAGTTGAAAAGGAAAAGGAAGATGGAGACCCAACGCAAATTACTGGGTTC
CAAACCGGTAGCGGCTTGAAATTCTTCGATATTGTTGTGGGTGAGGGCCC
AACTCCACAGTGGGGTGATATTGTCAACATTCACTTTGTTTTATATACAA
TCAGTCTTTCTGGGGAAACGCTTGTAAAACAGGAATCAACATATGACCGT
GGTGAGCAAGGATATCTTATTCATCATGGAAACGGAGAGCATGTCTTGGG
ACTTGAGGAAGCATTGCACACTATGAGAGTAGGAGGCAAGCGCAGAGCCA
TTGTTCCCCTGAAAGTTGGATATTCAAAGACTGGGTTCGCTCCGATACCT
TTATCTTTTAGAAAAAGGAAAGCATTCCTAGATGCAGTGAATAGCGGAGA
TGGAACAGTTGTATTTGATATTGAGCTGCGAACGATTTCGAAAGATCCCG
ATGATCGCGGCTATTACACAGACATCACGCCAACTGCCGAAGAAATTATA
AAAATATTTGAAGAACAGCGGGGGGTTGGAGTTGAAGATGTAGATCCATC
AAAACGTTTCACCGTTTAA
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protein sequence of Gchil3868.t1

>Gchil3868.t1 ID=Gchil3868.t1|Name=Gchil3868.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=223bp
MDKSHKQELNPPLLSRRAAIRLLFSLPVLPALAEVEKEKEDGDPTQITGF
QTGSGLKFFDIVVGEGPTPQWGDIVNIHFVLYTISLSGETLVKQESTYDR
GEQGYLIHHGNGEHVLGLEEALHTMRVGGKRRAIVPLKVGYSKTGFAPIP
LSFRKRKAFLDAVNSGDGTVVFDIELRTISKDPDDRGYYTDITPTAEEII
KIFEEQRGVGVEDVDPSKRFTV*
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mRNA from alignment at tig00000010_pilon:1123107..1123775-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3868.t1 ID=Gchil3868.t1|Name=Gchil3868.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=669bp|location=Sequence derived from alignment at tig00000010_pilon:1123107..1123775- (Gracilaria chilensis NLEC103_M9 male)
ATGGACAAAAGTCACAAACAAGAACTAAACCCTCCCCTTCTTTCTAGAAG
GGCGGCCATCCGTCTCTTGTTTTCGTTGCCAGTATTACCGGCTCTTGCGG
AAGTTGAAAAGGAAAAGGAAGATGGAGACCCAACGCAAATTACTGGGTTC
CAAACCGGTAGCGGCTTGAAATTCTTCGATATTGTTGTGGGTGAGGGCCC
AACTCCACAGTGGGGTGATATTGTCAACATTCACTTTGTTTTATATACAA
TCAGTCTTTCTGGGGAAACGCTTGTAAAACAGGAATCAACATATGACCGT
GGTGAGCAAGGATATCTTATTCATCATGGAAACGGAGAGCATGTCTTGGG
ACTTGAGGAAGCATTGCACACTATGAGAGTAGGAGGCAAGCGCAGAGCCA
TTGTTCCCCTGAAAGTTGGATATTCAAAGACTGGGTTCGCTCCGATACCT
TTATCTTTTAGAAAAAGGAAAGCATTCCTAGATGCAGTGAATAGCGGAGA
TGGAACAGTTGTATTTGATATTGAGCTGCGAACGATTTCGAAAGATCCCG
ATGATCGCGGCTATTACACAGACATCACGCCAACTGCCGAAGAAATTATA
AAAATATTTGAAGAACAGCGGGGGGTTGGAGTTGAAGATGTAGATCCATC
AAAACGTTTCACCGTTTAA
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Coding sequence (CDS) from alignment at tig00000010_pilon:1123107..1123775-

>Gchil3868.t1 ID=Gchil3868.t1|Name=Gchil3868.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=669bp|location=Sequence derived from alignment at tig00000010_pilon:1123107..1123775- (Gracilaria chilensis NLEC103_M9 male)
ATGGACAAAAGTCACAAACAAGAACTAAACCCTCCCCTTCTTTCTAGAAG
GGCGGCCATCCGTCTCTTGTTTTCGTTGCCAGTATTACCGGCTCTTGCGG
AAGTTGAAAAGGAAAAGGAAGATGGAGACCCAACGCAAATTACTGGGTTC
CAAACCGGTAGCGGCTTGAAATTCTTCGATATTGTTGTGGGTGAGGGCCC
AACTCCACAGTGGGGTGATATTGTCAACATTCACTTTGTTTTATATACAA
TCAGTCTTTCTGGGGAAACGCTTGTAAAACAGGAATCAACATATGACCGT
GGTGAGCAAGGATATCTTATTCATCATGGAAACGGAGAGCATGTCTTGGG
ACTTGAGGAAGCATTGCACACTATGAGAGTAGGAGGCAAGCGCAGAGCCA
TTGTTCCCCTGAAAGTTGGATATTCAAAGACTGGGTTCGCTCCGATACCT
TTATCTTTTAGAAAAAGGAAAGCATTCCTAGATGCAGTGAATAGCGGAGA
TGGAACAGTTGTATTTGATATTGAGCTGCGAACGATTTCGAAAGATCCCG
ATGATCGCGGCTATTACACAGACATCACGCCAACTGCCGAAGAAATTATA
AAAATATTTGAAGAACAGCGGGGGGTTGGAGTTGAAGATGTAGATCCATC
AAAACGTTTCACCGTTTAA
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