Gchil3866.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3866.t1
Unique Name	Gchil3866.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	455

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000010_pilon	contig	tig00000010_pilon:1114595..1115959 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D8LD67
PFAMs	CBM_1,LPMO_10
Max annot lvl	2759\|Eukaryota
Evalue	6.79e-26
EggNOG OGs	2CZUJ@1\|root,2SBQR@2759\|Eukaryota
Description	Fungal-type cellulose-binding domain
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3866	Gchil3866	Gracilaria chilensis NLEC103_M9 male	gene	tig00000010_pilon 1114595..1115959 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3866.t1.start1	Gchil3866.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000010_pilon 1114595..1114597 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3866.t1.CDS1	Gchil3866.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000010_pilon 1114595..1115959 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3866.t1.exon1	Gchil3866.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000010_pilon 1114595..1115959 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3866.t1.stop1	Gchil3866.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000010_pilon 1115957..1115959 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3866.t1	Gchil3866.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000010_pilon 1114595..1115959 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000010_pilon:1114595..1115959+
coding sequence from alignment at tig00000010_pilon:1114595..1115959+

mRNA sequence

>Gchil3866.t1 ID=Gchil3866.t1|Name=Gchil3866.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=455bp
MMCTPRQRGAYHAKDKCGSNLSEPPNPITDYCPHCLNGGTVATVKQNLPP
GGWKEYDPIRDESTMKRAGLCGDPRANNDHMLGGKFMKYDKTPIVKKWKS
GSVVDLQVEVDTNHNGYFEFFLCDLDTCGVLDISEKCFKKHCYPLKRTRV
PKCQSPTEKTHTQCGPIDEKYPSRFYVPCRKTGHVGIHLLGGDGTMLYKL
PDGVSCAHCVLQWYWASGNSCAPRGFLNYFEKYNNPFGTTCDSDGGGKGA
HRKGMGSCGGQVVPEEFWSCADVSITESTTQQSSGKGGSKPSKTDSVPPK
QSKNTPPPPPPKNNPKPTKPQSGVTSKPGSQAANPRPQKEEASPARKPKP
PQKDRPKRRPTQRRCVNEHGTCNGKVRCCGSEHVCVYKPSAERFMCEIWW
KLWSEVKGGGMDRAVITEGKLFDDEKDDFNREFDYEGYGEEESLEDYMGS
DKEL*

spliced messenger RNA

>Gchil3866.t1 ID=Gchil3866.t1|Name=Gchil3866.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1365bp|location=Sequence derived from alignment at tig00000010_pilon:1114595..1115959+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGTGCACACCTCGACAGAGAGGGGCGTATCATGCTAAAGACAAATG
CGGGTCAAATTTATCTGAACCTCCCAATCCAATAACGGATTACTGCCCTC
ACTGCCTGAACGGGGGTACTGTGGCCACTGTCAAACAAAATCTACCTCCG
GGAGGATGGAAAGAATATGATCCAATAAGAGATGAGTCTACCATGAAGAG
AGCTGGACTGTGTGGCGACCCAAGAGCAAACAATGATCACATGCTAGGCG
GGAAGTTCATGAAATATGACAAGACCCCCATTGTCAAAAAATGGAAGAGT
GGAAGTGTGGTTGACCTTCAGGTAGAAGTAGACACGAATCACAATGGATA
TTTTGAATTCTTTCTTTGCGACTTGGATACCTGTGGCGTTTTGGATATAT
CTGAGAAGTGTTTCAAAAAGCATTGCTATCCTTTAAAGAGGACTAGGGTC
CCCAAGTGTCAATCACCAACAGAGAAAACTCACACTCAATGCGGACCAAT
TGACGAGAAGTACCCATCTCGGTTCTATGTTCCTTGTCGAAAAACTGGTC
ACGTTGGAATACATCTTTTAGGTGGAGATGGAACAATGTTATATAAGTTA
CCCGATGGAGTGTCTTGCGCGCATTGTGTTTTACAATGGTACTGGGCATC
TGGAAATTCTTGTGCGCCTCGTGGGTTCCTAAATTACTTCGAGAAGTATA
ATAATCCCTTCGGAACGACTTGTGACAGTGATGGGGGTGGCAAGGGAGCG
CATAGAAAAGGAATGGGTAGCTGCGGTGGCCAAGTTGTTCCTGAGGAATT
TTGGTCTTGCGCTGATGTTAGTATCACTGAGAGCACAACCCAACAATCCT
CAGGGAAGGGAGGCTCCAAGCCTTCAAAAACGGATTCCGTTCCTCCAAAA
CAGTCCAAAAATACCCCTCCTCCTCCTCCGCCAAAGAACAATCCAAAACC
AACTAAACCTCAATCAGGTGTTACAAGTAAGCCAGGTTCACAAGCCGCCA
ATCCTAGGCCCCAAAAGGAAGAAGCTTCACCCGCACGGAAGCCTAAGCCA
CCACAAAAGGATCGCCCAAAAAGACGTCCAACACAAAGAAGATGTGTTAA
TGAGCACGGTACTTGCAACGGAAAGGTTCGATGCTGTGGTTCAGAGCACG
TCTGTGTTTACAAGCCCAGCGCTGAACGCTTTATGTGTGAAATATGGTGG
AAATTATGGAGTGAAGTTAAGGGTGGTGGAATGGACCGAGCTGTCATTAC
GGAAGGAAAACTATTTGATGATGAGAAAGATGACTTTAATAGAGAATTTG
ACTACGAAGGATATGGTGAAGAAGAGAGCCTGGAAGACTACATGGGAAGC
GACAAGGAGCTGTAA

protein sequence of Gchil3866.t1

>Gchil3866.t1 ID=Gchil3866.t1|Name=Gchil3866.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=455bp
MMCTPRQRGAYHAKDKCGSNLSEPPNPITDYCPHCLNGGTVATVKQNLPP
GGWKEYDPIRDESTMKRAGLCGDPRANNDHMLGGKFMKYDKTPIVKKWKS
GSVVDLQVEVDTNHNGYFEFFLCDLDTCGVLDISEKCFKKHCYPLKRTRV
PKCQSPTEKTHTQCGPIDEKYPSRFYVPCRKTGHVGIHLLGGDGTMLYKL
PDGVSCAHCVLQWYWASGNSCAPRGFLNYFEKYNNPFGTTCDSDGGGKGA
HRKGMGSCGGQVVPEEFWSCADVSITESTTQQSSGKGGSKPSKTDSVPPK
QSKNTPPPPPPKNNPKPTKPQSGVTSKPGSQAANPRPQKEEASPARKPKP
PQKDRPKRRPTQRRCVNEHGTCNGKVRCCGSEHVCVYKPSAERFMCEIWW
KLWSEVKGGGMDRAVITEGKLFDDEKDDFNREFDYEGYGEEESLEDYMGS
DKEL*

mRNA from alignment at tig00000010_pilon:1114595..1115959+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3866.t1 ID=Gchil3866.t1|Name=Gchil3866.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1365bp|location=Sequence derived from alignment at tig00000010_pilon:1114595..1115959+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGTGCACACCTCGACAGAGAGGGGCGTATCATGCTAAAGACAAATG
CGGGTCAAATTTATCTGAACCTCCCAATCCAATAACGGATTACTGCCCTC
ACTGCCTGAACGGGGGTACTGTGGCCACTGTCAAACAAAATCTACCTCCG
GGAGGATGGAAAGAATATGATCCAATAAGAGATGAGTCTACCATGAAGAG
AGCTGGACTGTGTGGCGACCCAAGAGCAAACAATGATCACATGCTAGGCG
GGAAGTTCATGAAATATGACAAGACCCCCATTGTCAAAAAATGGAAGAGT
GGAAGTGTGGTTGACCTTCAGGTAGAAGTAGACACGAATCACAATGGATA
TTTTGAATTCTTTCTTTGCGACTTGGATACCTGTGGCGTTTTGGATATAT
CTGAGAAGTGTTTCAAAAAGCATTGCTATCCTTTAAAGAGGACTAGGGTC
CCCAAGTGTCAATCACCAACAGAGAAAACTCACACTCAATGCGGACCAAT
TGACGAGAAGTACCCATCTCGGTTCTATGTTCCTTGTCGAAAAACTGGTC
ACGTTGGAATACATCTTTTAGGTGGAGATGGAACAATGTTATATAAGTTA
CCCGATGGAGTGTCTTGCGCGCATTGTGTTTTACAATGGTACTGGGCATC
TGGAAATTCTTGTGCGCCTCGTGGGTTCCTAAATTACTTCGAGAAGTATA
ATAATCCCTTCGGAACGACTTGTGACAGTGATGGGGGTGGCAAGGGAGCG
CATAGAAAAGGAATGGGTAGCTGCGGTGGCCAAGTTGTTCCTGAGGAATT
TTGGTCTTGCGCTGATGTTAGTATCACTGAGAGCACAACCCAACAATCCT
CAGGGAAGGGAGGCTCCAAGCCTTCAAAAACGGATTCCGTTCCTCCAAAA
CAGTCCAAAAATACCCCTCCTCCTCCTCCGCCAAAGAACAATCCAAAACC
AACTAAACCTCAATCAGGTGTTACAAGTAAGCCAGGTTCACAAGCCGCCA
ATCCTAGGCCCCAAAAGGAAGAAGCTTCACCCGCACGGAAGCCTAAGCCA
CCACAAAAGGATCGCCCAAAAAGACGTCCAACACAAAGAAGATGTGTTAA
TGAGCACGGTACTTGCAACGGAAAGGTTCGATGCTGTGGTTCAGAGCACG
TCTGTGTTTACAAGCCCAGCGCTGAACGCTTTATGTGTGAAATATGGTGG
AAATTATGGAGTGAAGTTAAGGGTGGTGGAATGGACCGAGCTGTCATTAC
GGAAGGAAAACTATTTGATGATGAGAAAGATGACTTTAATAGAGAATTTG
ACTACGAAGGATATGGTGAAGAAGAGAGCCTGGAAGACTACATGGGAAGC
GACAAGGAGCTGTAA

Coding sequence (CDS) from alignment at tig00000010_pilon:1114595..1115959+

>Gchil3866.t1 ID=Gchil3866.t1|Name=Gchil3866.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1365bp|location=Sequence derived from alignment at tig00000010_pilon:1114595..1115959+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGTGCACACCTCGACAGAGAGGGGCGTATCATGCTAAAGACAAATG
CGGGTCAAATTTATCTGAACCTCCCAATCCAATAACGGATTACTGCCCTC
ACTGCCTGAACGGGGGTACTGTGGCCACTGTCAAACAAAATCTACCTCCG
GGAGGATGGAAAGAATATGATCCAATAAGAGATGAGTCTACCATGAAGAG
AGCTGGACTGTGTGGCGACCCAAGAGCAAACAATGATCACATGCTAGGCG
GGAAGTTCATGAAATATGACAAGACCCCCATTGTCAAAAAATGGAAGAGT
GGAAGTGTGGTTGACCTTCAGGTAGAAGTAGACACGAATCACAATGGATA
TTTTGAATTCTTTCTTTGCGACTTGGATACCTGTGGCGTTTTGGATATAT
CTGAGAAGTGTTTCAAAAAGCATTGCTATCCTTTAAAGAGGACTAGGGTC
CCCAAGTGTCAATCACCAACAGAGAAAACTCACACTCAATGCGGACCAAT
TGACGAGAAGTACCCATCTCGGTTCTATGTTCCTTGTCGAAAAACTGGTC
ACGTTGGAATACATCTTTTAGGTGGAGATGGAACAATGTTATATAAGTTA
CCCGATGGAGTGTCTTGCGCGCATTGTGTTTTACAATGGTACTGGGCATC
TGGAAATTCTTGTGCGCCTCGTGGGTTCCTAAATTACTTCGAGAAGTATA
ATAATCCCTTCGGAACGACTTGTGACAGTGATGGGGGTGGCAAGGGAGCG
CATAGAAAAGGAATGGGTAGCTGCGGTGGCCAAGTTGTTCCTGAGGAATT
TTGGTCTTGCGCTGATGTTAGTATCACTGAGAGCACAACCCAACAATCCT
CAGGGAAGGGAGGCTCCAAGCCTTCAAAAACGGATTCCGTTCCTCCAAAA
CAGTCCAAAAATACCCCTCCTCCTCCTCCGCCAAAGAACAATCCAAAACC
AACTAAACCTCAATCAGGTGTTACAAGTAAGCCAGGTTCACAAGCCGCCA
ATCCTAGGCCCCAAAAGGAAGAAGCTTCACCCGCACGGAAGCCTAAGCCA
CCACAAAAGGATCGCCCAAAAAGACGTCCAACACAAAGAAGATGTGTTAA
TGAGCACGGTACTTGCAACGGAAAGGTTCGATGCTGTGGTTCAGAGCACG
TCTGTGTTTACAAGCCCAGCGCTGAACGCTTTATGTGTGAAATATGGTGG
AAATTATGGAGTGAAGTTAAGGGTGGTGGAATGGACCGAGCTGTCATTAC
GGAAGGAAAACTATTTGATGATGAGAAAGATGACTTTAATAGAGAATTTG
ACTACGAAGGATATGGTGAAGAAGAGAGCCTGGAAGACTACATGGGAAGC
GACAAGGAGCTGTAA