Gchil3865.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3865.t1
Unique Name	Gchil3865.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	556

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000010_pilon	contig	tig00000010_pilon:1100389..1102056 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	88036.EFJ14516
Preferred name	APC8
PFAMs	ANAPC8,TPR_1,TPR_11,TPR_7,TPR_8
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K03355
KEGG Pathway	ko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG Module	M00389
GOs	GO:0008150,GO:0031347,GO:0048583,GO:0050789,GO:0065007,GO:0080134
Evalue	2.04e-92
EggNOG OGs	COG0013@1\|root,KOG1155@2759\|Eukaryota,37HUX@33090\|Viridiplantae,3GD4H@35493\|Streptophyta
Description	anaphase-promoting complex subunit
COG category	DO
BRITE	ko00000,ko00001,ko00002,ko03036,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3865	Gchil3865	Gracilaria chilensis NLEC103_M9 male	gene	tig00000010_pilon 1100389..1102056 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3865.t1.stop1	Gchil3865.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000010_pilon 1100389..1100391 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3865.t1.CDS1	Gchil3865.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000010_pilon 1100389..1102056 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3865.t1.exon1	Gchil3865.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000010_pilon 1100389..1102056 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3865.t1.start1	Gchil3865.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000010_pilon 1102054..1102056 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3865.t1	Gchil3865.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000010_pilon 1100389..1102056 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000010_pilon:1100389..1102056-
coding sequence from alignment at tig00000010_pilon:1100389..1102056-

mRNA sequence

>Gchil3865.t1 ID=Gchil3865.t1|Name=Gchil3865.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=556bp
MEPETLEIDGLRSREVRGRLLDAIHQMNARGLVQSATWASEMLNSLPEES
GVQINMSVDQDIMEHVQKPKYVLAKSFFDSKQYRRAASTLKALQTPLSRF
LRMFATYLDGEKRKEEERHEHDGWPEAVNSELDSLRDELTQMSNNSEMDA
HLWYLFGVVLRHLKLEKGASQALQKSISLFPYNWGAWLELAPLCETRDAV
ESLAIENSWMKTLFTAHFLNETDAADYARMIYERVLEVVPKSLYIKTQLA
LSLYNMRMFDEAQQLYEDTFASDENYMDGADIYSNILYVKEDKVQLSVLA
NRCMKTDKFRLQTCCVIGNYYSLRGQHDQALSYFRRALKLNRNYLSAWTL
MGHEFMEMKNTSAAVEVYRRAVDINPKDFRAWYGLGQTYELLNMPLYTLY
YYQKAASLRPSDARMWCAVGQTLQELRRWDEAINCYERAVGCDDQEGLAL
GKLGYLYNRMAQEAQKDGRQHEKVSLYMERAAKYYTANLAMRDEEKLGGE
ETAQALRFLAEHWISNNDLAKAKEYGMRLLDYPGHDKDFVKAMLRQIHSL
EVQQG*

spliced messenger RNA

>Gchil3865.t1 ID=Gchil3865.t1|Name=Gchil3865.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1668bp|location=Sequence derived from alignment at tig00000010_pilon:1100389..1102056- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACCGGAAACGTTGGAAATTGATGGCCTGCGAAGTCGTGAGGTGCG
TGGACGGCTTCTCGATGCAATCCATCAGATGAATGCTAGAGGTCTAGTTC
AATCTGCAACCTGGGCGTCGGAGATGCTTAATTCGCTTCCAGAGGAGAGT
GGTGTTCAAATCAACATGAGTGTTGACCAGGACATCATGGAGCATGTGCA
GAAGCCTAAGTACGTTCTCGCGAAATCATTTTTTGATAGCAAACAGTATC
GTCGCGCTGCGTCCACTCTCAAAGCCTTGCAAACTCCTTTATCTCGTTTT
CTTCGCATGTTTGCAACCTATCTGGATGGAGAGAAGCGAAAAGAAGAGGA
AAGGCACGAACACGATGGCTGGCCAGAGGCTGTGAATTCAGAACTCGATT
CTCTGCGTGATGAACTAACTCAGATGAGCAATAATTCAGAAATGGATGCT
CATCTTTGGTATCTATTTGGGGTCGTACTTCGTCATCTTAAACTCGAGAA
GGGTGCCTCACAGGCTTTGCAAAAGAGTATTTCTTTGTTTCCATACAATT
GGGGTGCTTGGTTGGAATTGGCTCCTCTTTGTGAAACTCGGGATGCTGTT
GAATCGTTGGCCATCGAAAATTCTTGGATGAAGACTTTGTTCACAGCACA
TTTTTTGAACGAGACCGATGCAGCTGATTATGCTCGTATGATTTACGAAA
GGGTGCTGGAAGTAGTACCGAAGTCGTTATACATTAAAACCCAACTTGCA
TTATCTTTGTATAACATGAGAATGTTTGATGAGGCTCAACAGCTATACGA
GGACACTTTCGCAAGCGATGAGAACTACATGGATGGTGCAGATATATACT
CCAATATTCTCTACGTTAAGGAGGACAAGGTGCAGCTGAGTGTCCTCGCC
AATAGATGCATGAAAACTGATAAGTTCAGGTTACAGACATGTTGCGTTAT
TGGCAATTATTATTCCCTTCGTGGACAACATGATCAAGCTCTTTCTTATT
TTCGACGGGCATTGAAGCTTAACCGCAACTATCTTTCGGCTTGGACTCTG
ATGGGGCATGAGTTTATGGAAATGAAAAACACTTCTGCAGCTGTTGAAGT
TTATCGTCGGGCAGTAGACATTAATCCGAAGGACTTCCGTGCTTGGTACG
GACTTGGTCAGACATATGAACTTTTGAACATGCCGTTGTACACATTGTAC
TACTATCAAAAAGCAGCTTCTCTACGTCCGAGTGACGCACGAATGTGGTG
CGCGGTTGGACAAACTCTACAAGAACTGAGGAGATGGGATGAAGCCATCA
ACTGTTATGAGCGTGCTGTTGGATGTGACGATCAGGAAGGGCTTGCTCTT
GGAAAGTTAGGGTATTTGTACAATCGCATGGCGCAAGAAGCCCAAAAAGA
TGGCCGGCAACATGAAAAAGTGAGTTTGTACATGGAAAGAGCTGCAAAGT
ATTACACAGCGAATCTCGCTATGCGGGACGAAGAGAAGTTGGGTGGGGAG
GAAACTGCTCAAGCATTGCGTTTCTTAGCAGAGCATTGGATATCGAATAA
CGACCTTGCTAAAGCGAAAGAATATGGTATGAGGCTTTTGGATTACCCTG
GACATGACAAAGACTTCGTCAAAGCCATGCTCCGGCAAATTCATTCTTTG
GAAGTGCAGCAGGGCTGA

protein sequence of Gchil3865.t1

>Gchil3865.t1 ID=Gchil3865.t1|Name=Gchil3865.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=556bp
MEPETLEIDGLRSREVRGRLLDAIHQMNARGLVQSATWASEMLNSLPEES
GVQINMSVDQDIMEHVQKPKYVLAKSFFDSKQYRRAASTLKALQTPLSRF
LRMFATYLDGEKRKEEERHEHDGWPEAVNSELDSLRDELTQMSNNSEMDA
HLWYLFGVVLRHLKLEKGASQALQKSISLFPYNWGAWLELAPLCETRDAV
ESLAIENSWMKTLFTAHFLNETDAADYARMIYERVLEVVPKSLYIKTQLA
LSLYNMRMFDEAQQLYEDTFASDENYMDGADIYSNILYVKEDKVQLSVLA
NRCMKTDKFRLQTCCVIGNYYSLRGQHDQALSYFRRALKLNRNYLSAWTL
MGHEFMEMKNTSAAVEVYRRAVDINPKDFRAWYGLGQTYELLNMPLYTLY
YYQKAASLRPSDARMWCAVGQTLQELRRWDEAINCYERAVGCDDQEGLAL
GKLGYLYNRMAQEAQKDGRQHEKVSLYMERAAKYYTANLAMRDEEKLGGE
ETAQALRFLAEHWISNNDLAKAKEYGMRLLDYPGHDKDFVKAMLRQIHSL
EVQQG*

mRNA from alignment at tig00000010_pilon:1100389..1102056-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3865.t1 ID=Gchil3865.t1|Name=Gchil3865.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1668bp|location=Sequence derived from alignment at tig00000010_pilon:1100389..1102056- (Gracilaria chilensis NLEC103_M9 male)
ATGGAACCGGAAACGTTGGAAATTGATGGCCTGCGAAGTCGTGAGGTGCG
TGGACGGCTTCTCGATGCAATCCATCAGATGAATGCTAGAGGTCTAGTTC
AATCTGCAACCTGGGCGTCGGAGATGCTTAATTCGCTTCCAGAGGAGAGT
GGTGTTCAAATCAACATGAGTGTTGACCAGGACATCATGGAGCATGTGCA
GAAGCCTAAGTACGTTCTCGCGAAATCATTTTTTGATAGCAAACAGTATC
GTCGCGCTGCGTCCACTCTCAAAGCCTTGCAAACTCCTTTATCTCGTTTT
CTTCGCATGTTTGCAACCTATCTGGATGGAGAGAAGCGAAAAGAAGAGGA
AAGGCACGAACACGATGGCTGGCCAGAGGCTGTGAATTCAGAACTCGATT
CTCTGCGTGATGAACTAACTCAGATGAGCAATAATTCAGAAATGGATGCT
CATCTTTGGTATCTATTTGGGGTCGTACTTCGTCATCTTAAACTCGAGAA
GGGTGCCTCACAGGCTTTGCAAAAGAGTATTTCTTTGTTTCCATACAATT
GGGGTGCTTGGTTGGAATTGGCTCCTCTTTGTGAAACTCGGGATGCTGTT
GAATCGTTGGCCATCGAAAATTCTTGGATGAAGACTTTGTTCACAGCACA
TTTTTTGAACGAGACCGATGCAGCTGATTATGCTCGTATGATTTACGAAA
GGGTGCTGGAAGTAGTACCGAAGTCGTTATACATTAAAACCCAACTTGCA
TTATCTTTGTATAACATGAGAATGTTTGATGAGGCTCAACAGCTATACGA
GGACACTTTCGCAAGCGATGAGAACTACATGGATGGTGCAGATATATACT
CCAATATTCTCTACGTTAAGGAGGACAAGGTGCAGCTGAGTGTCCTCGCC
AATAGATGCATGAAAACTGATAAGTTCAGGTTACAGACATGTTGCGTTAT
TGGCAATTATTATTCCCTTCGTGGACAACATGATCAAGCTCTTTCTTATT
TTCGACGGGCATTGAAGCTTAACCGCAACTATCTTTCGGCTTGGACTCTG
ATGGGGCATGAGTTTATGGAAATGAAAAACACTTCTGCAGCTGTTGAAGT
TTATCGTCGGGCAGTAGACATTAATCCGAAGGACTTCCGTGCTTGGTACG
GACTTGGTCAGACATATGAACTTTTGAACATGCCGTTGTACACATTGTAC
TACTATCAAAAAGCAGCTTCTCTACGTCCGAGTGACGCACGAATGTGGTG
CGCGGTTGGACAAACTCTACAAGAACTGAGGAGATGGGATGAAGCCATCA
ACTGTTATGAGCGTGCTGTTGGATGTGACGATCAGGAAGGGCTTGCTCTT
GGAAAGTTAGGGTATTTGTACAATCGCATGGCGCAAGAAGCCCAAAAAGA
TGGCCGGCAACATGAAAAAGTGAGTTTGTACATGGAAAGAGCTGCAAAGT
ATTACACAGCGAATCTCGCTATGCGGGACGAAGAGAAGTTGGGTGGGGAG
GAAACTGCTCAAGCATTGCGTTTCTTAGCAGAGCATTGGATATCGAATAA
CGACCTTGCTAAAGCGAAAGAATATGGTATGAGGCTTTTGGATTACCCTG
GACATGACAAAGACTTCGTCAAAGCCATGCTCCGGCAAATTCATTCTTTG
GAAGTGCAGCAGGGCTGA

Coding sequence (CDS) from alignment at tig00000010_pilon:1100389..1102056-

>Gchil3865.t1 ID=Gchil3865.t1|Name=Gchil3865.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1668bp|location=Sequence derived from alignment at tig00000010_pilon:1100389..1102056- (Gracilaria chilensis NLEC103_M9 male)
ATGGAACCGGAAACGTTGGAAATTGATGGCCTGCGAAGTCGTGAGGTGCG
TGGACGGCTTCTCGATGCAATCCATCAGATGAATGCTAGAGGTCTAGTTC
AATCTGCAACCTGGGCGTCGGAGATGCTTAATTCGCTTCCAGAGGAGAGT
GGTGTTCAAATCAACATGAGTGTTGACCAGGACATCATGGAGCATGTGCA
GAAGCCTAAGTACGTTCTCGCGAAATCATTTTTTGATAGCAAACAGTATC
GTCGCGCTGCGTCCACTCTCAAAGCCTTGCAAACTCCTTTATCTCGTTTT
CTTCGCATGTTTGCAACCTATCTGGATGGAGAGAAGCGAAAAGAAGAGGA
AAGGCACGAACACGATGGCTGGCCAGAGGCTGTGAATTCAGAACTCGATT
CTCTGCGTGATGAACTAACTCAGATGAGCAATAATTCAGAAATGGATGCT
CATCTTTGGTATCTATTTGGGGTCGTACTTCGTCATCTTAAACTCGAGAA
GGGTGCCTCACAGGCTTTGCAAAAGAGTATTTCTTTGTTTCCATACAATT
GGGGTGCTTGGTTGGAATTGGCTCCTCTTTGTGAAACTCGGGATGCTGTT
GAATCGTTGGCCATCGAAAATTCTTGGATGAAGACTTTGTTCACAGCACA
TTTTTTGAACGAGACCGATGCAGCTGATTATGCTCGTATGATTTACGAAA
GGGTGCTGGAAGTAGTACCGAAGTCGTTATACATTAAAACCCAACTTGCA
TTATCTTTGTATAACATGAGAATGTTTGATGAGGCTCAACAGCTATACGA
GGACACTTTCGCAAGCGATGAGAACTACATGGATGGTGCAGATATATACT
CCAATATTCTCTACGTTAAGGAGGACAAGGTGCAGCTGAGTGTCCTCGCC
AATAGATGCATGAAAACTGATAAGTTCAGGTTACAGACATGTTGCGTTAT
TGGCAATTATTATTCCCTTCGTGGACAACATGATCAAGCTCTTTCTTATT
TTCGACGGGCATTGAAGCTTAACCGCAACTATCTTTCGGCTTGGACTCTG
ATGGGGCATGAGTTTATGGAAATGAAAAACACTTCTGCAGCTGTTGAAGT
TTATCGTCGGGCAGTAGACATTAATCCGAAGGACTTCCGTGCTTGGTACG
GACTTGGTCAGACATATGAACTTTTGAACATGCCGTTGTACACATTGTAC
TACTATCAAAAAGCAGCTTCTCTACGTCCGAGTGACGCACGAATGTGGTG
CGCGGTTGGACAAACTCTACAAGAACTGAGGAGATGGGATGAAGCCATCA
ACTGTTATGAGCGTGCTGTTGGATGTGACGATCAGGAAGGGCTTGCTCTT
GGAAAGTTAGGGTATTTGTACAATCGCATGGCGCAAGAAGCCCAAAAAGA
TGGCCGGCAACATGAAAAAGTGAGTTTGTACATGGAAAGAGCTGCAAAGT
ATTACACAGCGAATCTCGCTATGCGGGACGAAGAGAAGTTGGGTGGGGAG
GAAACTGCTCAAGCATTGCGTTTCTTAGCAGAGCATTGGATATCGAATAA
CGACCTTGCTAAAGCGAAAGAATATGGTATGAGGCTTTTGGATTACCCTG
GACATGACAAAGACTTCGTCAAAGCCATGCTCCGGCAAATTCATTCTTTG
GAAGTGCAGCAGGGCTGA