Gchil3864.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3864.t1
Unique Name	Gchil3864.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	447

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000010_pilon	contig	tig00000010_pilon:1098290..1099630 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705279.1
PFAMs	PDZ_2,Trypsin_2
Max annot lvl	2759\|Eukaryota
Evalue	4.28e-143
EggNOG OGs	COG0265@1\|root,KOG1320@2759\|Eukaryota
Description	serine-type endopeptidase activity
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3864	Gchil3864	Gracilaria chilensis NLEC103_M9 male	gene	tig00000010_pilon 1098290..1099630 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3864.t1.start1	Gchil3864.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000010_pilon 1098290..1098292 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3864.t1.CDS1	Gchil3864.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000010_pilon 1098290..1099630 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3864.t1.exon1	Gchil3864.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000010_pilon 1098290..1099630 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3864.t1.stop1	Gchil3864.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000010_pilon 1099628..1099630 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3864.t1	Gchil3864.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000010_pilon 1098290..1099630 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000010_pilon:1098290..1099630+
coding sequence from alignment at tig00000010_pilon:1098290..1099630+

mRNA sequence

>Gchil3864.t1 ID=Gchil3864.t1|Name=Gchil3864.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=447bp
MAFVSAVPLRRPASPSSRRSPLRTPPRPVASLASLASLASLPALFNPFSP
PKQPDPPAQHQPANPLNPSAAKPSSEKPLHLFDSTTKKPRQSSSFVTQAV
RSVGAAVVRIDTERVIRQLPQDPLFDDPQFAKIFGEGPYRPRFERGQGSG
FIISSDGHLLTNAHVVRAAQRVTVTLTDGRSFIGVVKGSDEYLDLAVIKI
DAGGKPLPVAPMGSSSELQVGDWVIAVGNPVGLDNTVTLGIVSSLNRSSA
EVGIPEKRLNLIQTSASLNQGSSGGPICNQWGEVVGISTAIRINAEAIGF
AIPIDIAKDVASELARGRPIDHAYVGVKMTTITPASARQNNQDPNSLSIV
PEIDGALVVRVMPKSPAATGGLRRYDVIVSIDGKKVRTAKDVQSVVDRSR
VGQLVNVQVIRGESSSPIQLGIKTGNLSSLKPETSTSTTSPFDQLK*

spliced messenger RNA

>Gchil3864.t1 ID=Gchil3864.t1|Name=Gchil3864.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1341bp|location=Sequence derived from alignment at tig00000010_pilon:1098290..1099630+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTTCGTCTCCGCCGTCCCGCTGCGCCGCCCAGCTTCGCCGTCTTC
CCGCCGCTCTCCATTGCGCACCCCCCCGCGGCCAGTTGCCTCTCTGGCCT
CGTTGGCGTCGCTGGCCTCGCTTCCTGCGCTCTTCAACCCTTTCAGTCCC
CCAAAGCAGCCCGACCCCCCTGCGCAGCACCAGCCTGCTAACCCACTCAA
CCCCTCAGCCGCAAAGCCTAGCTCCGAAAAGCCTCTGCATCTCTTCGATT
CTACCACCAAGAAACCCCGCCAGAGCTCTTCTTTCGTCACACAGGCCGTG
CGTTCCGTGGGCGCTGCCGTCGTTCGCATCGACACCGAACGCGTCATTCG
TCAGCTCCCGCAAGACCCTCTCTTCGATGACCCCCAATTCGCCAAGATCT
TTGGCGAGGGCCCTTACCGTCCACGTTTCGAGCGCGGCCAGGGCTCAGGC
TTCATCATCTCGTCGGACGGCCACTTGCTCACCAATGCCCACGTTGTGCG
CGCCGCACAGAGGGTCACTGTCACACTGACCGACGGCCGCTCATTCATCG
GCGTCGTCAAAGGTTCCGATGAGTACCTGGATCTTGCTGTTATAAAGATC
GACGCTGGCGGAAAACCGCTTCCGGTTGCTCCCATGGGCTCAAGCTCTGA
GCTCCAAGTTGGCGACTGGGTCATTGCCGTCGGAAACCCCGTTGGTCTCG
ACAACACCGTCACTCTGGGCATCGTCAGCAGCCTCAACCGCTCGTCTGCG
GAAGTCGGTATCCCTGAGAAGCGTCTCAATCTCATCCAGACATCAGCCTC
GCTAAACCAGGGCTCGTCCGGCGGACCCATCTGCAACCAGTGGGGTGAGG
TTGTTGGAATTAGTACTGCCATAAGAATCAACGCGGAGGCCATTGGTTTC
GCCATTCCAATCGACATAGCCAAGGACGTCGCCTCCGAGCTGGCGCGCGG
GAGGCCCATTGATCACGCTTATGTCGGCGTCAAGATGACAACCATCACTC
CTGCCTCCGCTCGCCAGAACAATCAAGACCCCAACTCTTTGAGCATTGTC
CCAGAGATTGATGGCGCTTTGGTGGTCCGTGTTATGCCGAAGAGCCCTGC
CGCGACAGGCGGCTTGCGGCGCTATGATGTAATCGTTTCCATAGATGGAA
AAAAGGTCCGAACTGCAAAAGACGTCCAGTCCGTAGTGGACCGCTCTCGT
GTGGGTCAACTCGTCAATGTTCAAGTTATTCGCGGAGAGTCCAGTTCCCC
GATTCAGCTGGGAATCAAGACTGGCAACCTTTCATCCCTGAAACCCGAAA
CATCTACATCTACAACGAGCCCGTTTGATCAGCTTAAGTAA

protein sequence of Gchil3864.t1

>Gchil3864.t1 ID=Gchil3864.t1|Name=Gchil3864.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=447bp
MAFVSAVPLRRPASPSSRRSPLRTPPRPVASLASLASLASLPALFNPFSP
PKQPDPPAQHQPANPLNPSAAKPSSEKPLHLFDSTTKKPRQSSSFVTQAV
RSVGAAVVRIDTERVIRQLPQDPLFDDPQFAKIFGEGPYRPRFERGQGSG
FIISSDGHLLTNAHVVRAAQRVTVTLTDGRSFIGVVKGSDEYLDLAVIKI
DAGGKPLPVAPMGSSSELQVGDWVIAVGNPVGLDNTVTLGIVSSLNRSSA
EVGIPEKRLNLIQTSASLNQGSSGGPICNQWGEVVGISTAIRINAEAIGF
AIPIDIAKDVASELARGRPIDHAYVGVKMTTITPASARQNNQDPNSLSIV
PEIDGALVVRVMPKSPAATGGLRRYDVIVSIDGKKVRTAKDVQSVVDRSR
VGQLVNVQVIRGESSSPIQLGIKTGNLSSLKPETSTSTTSPFDQLK*

mRNA from alignment at tig00000010_pilon:1098290..1099630+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3864.t1 ID=Gchil3864.t1|Name=Gchil3864.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1341bp|location=Sequence derived from alignment at tig00000010_pilon:1098290..1099630+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCTTCGTCTCCGCCGTCCCGCTGCGCCGCCCAGCTTCGCCGTCTTC
CCGCCGCTCTCCATTGCGCACCCCCCCGCGGCCAGTTGCCTCTCTGGCCT
CGTTGGCGTCGCTGGCCTCGCTTCCTGCGCTCTTCAACCCTTTCAGTCCC
CCAAAGCAGCCCGACCCCCCTGCGCAGCACCAGCCTGCTAACCCACTCAA
CCCCTCAGCCGCAAAGCCTAGCTCCGAAAAGCCTCTGCATCTCTTCGATT
CTACCACCAAGAAACCCCGCCAGAGCTCTTCTTTCGTCACACAGGCCGTG
CGTTCCGTGGGCGCTGCCGTCGTTCGCATCGACACCGAACGCGTCATTCG
TCAGCTCCCGCAAGACCCTCTCTTCGATGACCCCCAATTCGCCAAGATCT
TTGGCGAGGGCCCTTACCGTCCACGTTTCGAGCGCGGCCAGGGCTCAGGC
TTCATCATCTCGTCGGACGGCCACTTGCTCACCAATGCCCACGTTGTGCG
CGCCGCACAGAGGGTCACTGTCACACTGACCGACGGCCGCTCATTCATCG
GCGTCGTCAAAGGTTCCGATGAGTACCTGGATCTTGCTGTTATAAAGATC
GACGCTGGCGGAAAACCGCTTCCGGTTGCTCCCATGGGCTCAAGCTCTGA
GCTCCAAGTTGGCGACTGGGTCATTGCCGTCGGAAACCCCGTTGGTCTCG
ACAACACCGTCACTCTGGGCATCGTCAGCAGCCTCAACCGCTCGTCTGCG
GAAGTCGGTATCCCTGAGAAGCGTCTCAATCTCATCCAGACATCAGCCTC
GCTAAACCAGGGCTCGTCCGGCGGACCCATCTGCAACCAGTGGGGTGAGG
TTGTTGGAATTAGTACTGCCATAAGAATCAACGCGGAGGCCATTGGTTTC
GCCATTCCAATCGACATAGCCAAGGACGTCGCCTCCGAGCTGGCGCGCGG
GAGGCCCATTGATCACGCTTATGTCGGCGTCAAGATGACAACCATCACTC
CTGCCTCCGCTCGCCAGAACAATCAAGACCCCAACTCTTTGAGCATTGTC
CCAGAGATTGATGGCGCTTTGGTGGTCCGTGTTATGCCGAAGAGCCCTGC
CGCGACAGGCGGCTTGCGGCGCTATGATGTAATCGTTTCCATAGATGGAA
AAAAGGTCCGAACTGCAAAAGACGTCCAGTCCGTAGTGGACCGCTCTCGT
GTGGGTCAACTCGTCAATGTTCAAGTTATTCGCGGAGAGTCCAGTTCCCC
GATTCAGCTGGGAATCAAGACTGGCAACCTTTCATCCCTGAAACCCGAAA
CATCTACATCTACAACGAGCCCGTTTGATCAGCTTAAGTAA

Coding sequence (CDS) from alignment at tig00000010_pilon:1098290..1099630+

>Gchil3864.t1 ID=Gchil3864.t1|Name=Gchil3864.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1341bp|location=Sequence derived from alignment at tig00000010_pilon:1098290..1099630+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCTTCGTCTCCGCCGTCCCGCTGCGCCGCCCAGCTTCGCCGTCTTC
CCGCCGCTCTCCATTGCGCACCCCCCCGCGGCCAGTTGCCTCTCTGGCCT
CGTTGGCGTCGCTGGCCTCGCTTCCTGCGCTCTTCAACCCTTTCAGTCCC
CCAAAGCAGCCCGACCCCCCTGCGCAGCACCAGCCTGCTAACCCACTCAA
CCCCTCAGCCGCAAAGCCTAGCTCCGAAAAGCCTCTGCATCTCTTCGATT
CTACCACCAAGAAACCCCGCCAGAGCTCTTCTTTCGTCACACAGGCCGTG
CGTTCCGTGGGCGCTGCCGTCGTTCGCATCGACACCGAACGCGTCATTCG
TCAGCTCCCGCAAGACCCTCTCTTCGATGACCCCCAATTCGCCAAGATCT
TTGGCGAGGGCCCTTACCGTCCACGTTTCGAGCGCGGCCAGGGCTCAGGC
TTCATCATCTCGTCGGACGGCCACTTGCTCACCAATGCCCACGTTGTGCG
CGCCGCACAGAGGGTCACTGTCACACTGACCGACGGCCGCTCATTCATCG
GCGTCGTCAAAGGTTCCGATGAGTACCTGGATCTTGCTGTTATAAAGATC
GACGCTGGCGGAAAACCGCTTCCGGTTGCTCCCATGGGCTCAAGCTCTGA
GCTCCAAGTTGGCGACTGGGTCATTGCCGTCGGAAACCCCGTTGGTCTCG
ACAACACCGTCACTCTGGGCATCGTCAGCAGCCTCAACCGCTCGTCTGCG
GAAGTCGGTATCCCTGAGAAGCGTCTCAATCTCATCCAGACATCAGCCTC
GCTAAACCAGGGCTCGTCCGGCGGACCCATCTGCAACCAGTGGGGTGAGG
TTGTTGGAATTAGTACTGCCATAAGAATCAACGCGGAGGCCATTGGTTTC
GCCATTCCAATCGACATAGCCAAGGACGTCGCCTCCGAGCTGGCGCGCGG
GAGGCCCATTGATCACGCTTATGTCGGCGTCAAGATGACAACCATCACTC
CTGCCTCCGCTCGCCAGAACAATCAAGACCCCAACTCTTTGAGCATTGTC
CCAGAGATTGATGGCGCTTTGGTGGTCCGTGTTATGCCGAAGAGCCCTGC
CGCGACAGGCGGCTTGCGGCGCTATGATGTAATCGTTTCCATAGATGGAA
AAAAGGTCCGAACTGCAAAAGACGTCCAGTCCGTAGTGGACCGCTCTCGT
GTGGGTCAACTCGTCAATGTTCAAGTTATTCGCGGAGAGTCCAGTTCCCC
GATTCAGCTGGGAATCAAGACTGGCAACCTTTCATCCCTGAAACCCGAAA
CATCTACATCTACAACGAGCCCGTTTGATCAGCTTAAGTAA