Gchil3863.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3863.t1
Unique NameGchil3863.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length540
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:1096213..1097832 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702978.1
PFAMsMyb_DNA-binding,RWP-RK
Max annot lvl2759|Eukaryota
Evalue1.56e-18
EggNOG OGsKOG0724@1|root,KOG0724@2759|Eukaryota
Descriptionubiquitin modification-dependent histone binding
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3863Gchil3863Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 1096213..1097832 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3863.t1.stop1Gchil3863.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 1096213..1096215 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3863.t1.CDS1Gchil3863.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1096213..1097832 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3863.t1.exon1Gchil3863.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1096213..1097832 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3863.t1.start1Gchil3863.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 1097830..1097832 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3863.t1Gchil3863.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 1096213..1097832 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3863.t1 ID=Gchil3863.t1|Name=Gchil3863.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=540bp
MEGQFAVHALLIEQQRRIKALEAELASTQMELVRLRATHNPLIDSSHPSP
PPPTAHQQQCAHDDAKKTSSRYWTPDEHNRFLEGLRLFGQKDIKAIARHV
GTRNATQVRTHAQKYYLRIERERAKAANDLKSSQKPSSSKSSGPIVKSEA
VEQPIFYPAASNSNSHTNSLNNSASSTPNVSSNPNPGLSNPQRSTLSSRL
SPPSASTPPADAAPPLQFSSESLPSTPSPGLPHPVPVKQQLSPPSATSQP
PAVTAPPTLQVTEKQDKSKSPAKAIPPKSSKRPPPSASHRSPRKRAKPSA
TKQSPTLTTNTPGSPTRSASTPPPPPSSSASPPDSDSQKDKSAKPETAVI
PLRSQTHAQQRTVHDLKASVKESGGSIANFRTWMRAMAGDDVGPSAFKPP
AMRRNGSSNSVLAELSKNAGVLSRSNSFVLPTGKGVTRSNSILSLLSGIP
TVMRESPSTDRLLGLDTSDDKVLAALKAVDAAGNAAVVAGQTMTANNSLG
TMGDRTFSFSQLNHMGFDDLEDTGAVALAIQDDQKWSDT*
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spliced messenger RNA

>Gchil3863.t1 ID=Gchil3863.t1|Name=Gchil3863.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1620bp|location=Sequence derived from alignment at tig00000010_pilon:1096213..1097832- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGGTCAGTTCGCCGTGCACGCCCTGCTCATCGAGCAGCAGCGTCG
CATCAAGGCTCTCGAGGCTGAGCTCGCGTCCACCCAGATGGAGCTTGTGC
GCCTTCGCGCTACTCATAACCCTCTCATCGATTCCTCTCATCCCTCCCCC
CCACCGCCCACCGCACACCAACAGCAGTGTGCTCACGACGACGCCAAGAA
GACCAGCTCGCGCTATTGGACCCCTGACGAGCACAACCGCTTTCTAGAAG
GCCTCCGCCTCTTTGGTCAGAAAGATATCAAGGCCATAGCTCGTCACGTT
GGCACCCGGAACGCCACTCAGGTGCGCACCCACGCTCAGAAGTACTACCT
CCGCATTGAGCGCGAACGCGCCAAAGCCGCCAATGACCTCAAGAGCTCCC
AGAAGCCCTCGTCCTCCAAATCGAGTGGTCCCATCGTCAAGTCTGAAGCC
GTTGAGCAGCCAATATTCTACCCCGCAGCAAGCAACTCCAATAGTCATAC
AAACTCGCTCAACAATAGTGCCTCCAGTACACCAAACGTCAGCAGCAACC
CCAACCCGGGACTCAGTAATCCACAGCGGTCTACTCTTTCCTCAAGGCTT
TCTCCCCCTAGTGCTTCTACTCCCCCCGCCGATGCCGCTCCACCGCTACA
GTTCTCCTCCGAATCGCTTCCTTCCACTCCGTCGCCTGGGCTCCCACATC
CAGTGCCCGTCAAACAACAATTGTCCCCGCCCTCAGCTACTAGTCAACCT
CCGGCTGTAACGGCTCCCCCCACTCTCCAGGTCACGGAGAAACAGGACAA
ATCTAAATCCCCTGCCAAAGCAATCCCCCCAAAATCTTCGAAAAGACCTC
CACCATCTGCATCTCACCGTAGTCCTCGGAAGCGCGCAAAACCATCGGCC
ACCAAACAATCTCCAACTCTCACCACAAATACCCCAGGTTCACCAACGCG
GTCAGCATCCACTCCTCCTCCACCGCCATCGTCCTCCGCATCTCCACCCG
ATTCAGACTCACAAAAAGACAAGTCCGCTAAGCCTGAAACTGCTGTAATT
CCATTGAGATCTCAGACTCACGCTCAACAGCGCACTGTCCATGATCTCAA
GGCATCCGTCAAGGAAAGTGGTGGTAGTATCGCCAACTTCAGGACTTGGA
TGCGTGCCATGGCAGGAGATGATGTAGGACCAAGTGCATTCAAGCCGCCC
GCAATGCGGCGAAACGGTAGTTCAAATTCAGTTCTCGCTGAATTGTCGAA
GAATGCCGGAGTGCTCTCCCGCTCCAACTCCTTCGTACTGCCCACAGGCA
AGGGCGTGACTCGCTCCAATAGTATTCTTTCCCTTCTCAGCGGCATTCCC
ACCGTGATGAGAGAGTCCCCAAGCACAGACAGATTGCTTGGGTTGGACAC
TTCGGATGACAAGGTGCTAGCCGCCCTCAAGGCTGTGGATGCCGCCGGAA
ACGCCGCCGTAGTCGCAGGTCAGACCATGACGGCCAACAATTCGCTTGGT
ACGATGGGTGATCGAACCTTTAGTTTCAGTCAGCTTAATCATATGGGCTT
CGATGACCTCGAGGATACAGGGGCCGTTGCGCTAGCCATACAGGATGATC
AGAAGTGGAGCGACACATAG
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protein sequence of Gchil3863.t1

>Gchil3863.t1 ID=Gchil3863.t1|Name=Gchil3863.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=540bp
MEGQFAVHALLIEQQRRIKALEAELASTQMELVRLRATHNPLIDSSHPSP
PPPTAHQQQCAHDDAKKTSSRYWTPDEHNRFLEGLRLFGQKDIKAIARHV
GTRNATQVRTHAQKYYLRIERERAKAANDLKSSQKPSSSKSSGPIVKSEA
VEQPIFYPAASNSNSHTNSLNNSASSTPNVSSNPNPGLSNPQRSTLSSRL
SPPSASTPPADAAPPLQFSSESLPSTPSPGLPHPVPVKQQLSPPSATSQP
PAVTAPPTLQVTEKQDKSKSPAKAIPPKSSKRPPPSASHRSPRKRAKPSA
TKQSPTLTTNTPGSPTRSASTPPPPPSSSASPPDSDSQKDKSAKPETAVI
PLRSQTHAQQRTVHDLKASVKESGGSIANFRTWMRAMAGDDVGPSAFKPP
AMRRNGSSNSVLAELSKNAGVLSRSNSFVLPTGKGVTRSNSILSLLSGIP
TVMRESPSTDRLLGLDTSDDKVLAALKAVDAAGNAAVVAGQTMTANNSLG
TMGDRTFSFSQLNHMGFDDLEDTGAVALAIQDDQKWSDT*
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mRNA from alignment at tig00000010_pilon:1096213..1097832-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3863.t1 ID=Gchil3863.t1|Name=Gchil3863.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1620bp|location=Sequence derived from alignment at tig00000010_pilon:1096213..1097832- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGGGTCAGTTCGCCGTGCACGCCCTGCTCATCGAGCAGCAGCGTCG
CATCAAGGCTCTCGAGGCTGAGCTCGCGTCCACCCAGATGGAGCTTGTGC
GCCTTCGCGCTACTCATAACCCTCTCATCGATTCCTCTCATCCCTCCCCC
CCACCGCCCACCGCACACCAACAGCAGTGTGCTCACGACGACGCCAAGAA
GACCAGCTCGCGCTATTGGACCCCTGACGAGCACAACCGCTTTCTAGAAG
GCCTCCGCCTCTTTGGTCAGAAAGATATCAAGGCCATAGCTCGTCACGTT
GGCACCCGGAACGCCACTCAGGTGCGCACCCACGCTCAGAAGTACTACCT
CCGCATTGAGCGCGAACGCGCCAAAGCCGCCAATGACCTCAAGAGCTCCC
AGAAGCCCTCGTCCTCCAAATCGAGTGGTCCCATCGTCAAGTCTGAAGCC
GTTGAGCAGCCAATATTCTACCCCGCAGCAAGCAACTCCAATAGTCATAC
AAACTCGCTCAACAATAGTGCCTCCAGTACACCAAACGTCAGCAGCAACC
CCAACCCGGGACTCAGTAATCCACAGCGGTCTACTCTTTCCTCAAGGCTT
TCTCCCCCTAGTGCTTCTACTCCCCCCGCCGATGCCGCTCCACCGCTACA
GTTCTCCTCCGAATCGCTTCCTTCCACTCCGTCGCCTGGGCTCCCACATC
CAGTGCCCGTCAAACAACAATTGTCCCCGCCCTCAGCTACTAGTCAACCT
CCGGCTGTAACGGCTCCCCCCACTCTCCAGGTCACGGAGAAACAGGACAA
ATCTAAATCCCCTGCCAAAGCAATCCCCCCAAAATCTTCGAAAAGACCTC
CACCATCTGCATCTCACCGTAGTCCTCGGAAGCGCGCAAAACCATCGGCC
ACCAAACAATCTCCAACTCTCACCACAAATACCCCAGGTTCACCAACGCG
GTCAGCATCCACTCCTCCTCCACCGCCATCGTCCTCCGCATCTCCACCCG
ATTCAGACTCACAAAAAGACAAGTCCGCTAAGCCTGAAACTGCTGTAATT
CCATTGAGATCTCAGACTCACGCTCAACAGCGCACTGTCCATGATCTCAA
GGCATCCGTCAAGGAAAGTGGTGGTAGTATCGCCAACTTCAGGACTTGGA
TGCGTGCCATGGCAGGAGATGATGTAGGACCAAGTGCATTCAAGCCGCCC
GCAATGCGGCGAAACGGTAGTTCAAATTCAGTTCTCGCTGAATTGTCGAA
GAATGCCGGAGTGCTCTCCCGCTCCAACTCCTTCGTACTGCCCACAGGCA
AGGGCGTGACTCGCTCCAATAGTATTCTTTCCCTTCTCAGCGGCATTCCC
ACCGTGATGAGAGAGTCCCCAAGCACAGACAGATTGCTTGGGTTGGACAC
TTCGGATGACAAGGTGCTAGCCGCCCTCAAGGCTGTGGATGCCGCCGGAA
ACGCCGCCGTAGTCGCAGGTCAGACCATGACGGCCAACAATTCGCTTGGT
ACGATGGGTGATCGAACCTTTAGTTTCAGTCAGCTTAATCATATGGGCTT
CGATGACCTCGAGGATACAGGGGCCGTTGCGCTAGCCATACAGGATGATC
AGAAGTGGAGCGACACATAG
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Coding sequence (CDS) from alignment at tig00000010_pilon:1096213..1097832-

>Gchil3863.t1 ID=Gchil3863.t1|Name=Gchil3863.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1620bp|location=Sequence derived from alignment at tig00000010_pilon:1096213..1097832- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGGGTCAGTTCGCCGTGCACGCCCTGCTCATCGAGCAGCAGCGTCG
CATCAAGGCTCTCGAGGCTGAGCTCGCGTCCACCCAGATGGAGCTTGTGC
GCCTTCGCGCTACTCATAACCCTCTCATCGATTCCTCTCATCCCTCCCCC
CCACCGCCCACCGCACACCAACAGCAGTGTGCTCACGACGACGCCAAGAA
GACCAGCTCGCGCTATTGGACCCCTGACGAGCACAACCGCTTTCTAGAAG
GCCTCCGCCTCTTTGGTCAGAAAGATATCAAGGCCATAGCTCGTCACGTT
GGCACCCGGAACGCCACTCAGGTGCGCACCCACGCTCAGAAGTACTACCT
CCGCATTGAGCGCGAACGCGCCAAAGCCGCCAATGACCTCAAGAGCTCCC
AGAAGCCCTCGTCCTCCAAATCGAGTGGTCCCATCGTCAAGTCTGAAGCC
GTTGAGCAGCCAATATTCTACCCCGCAGCAAGCAACTCCAATAGTCATAC
AAACTCGCTCAACAATAGTGCCTCCAGTACACCAAACGTCAGCAGCAACC
CCAACCCGGGACTCAGTAATCCACAGCGGTCTACTCTTTCCTCAAGGCTT
TCTCCCCCTAGTGCTTCTACTCCCCCCGCCGATGCCGCTCCACCGCTACA
GTTCTCCTCCGAATCGCTTCCTTCCACTCCGTCGCCTGGGCTCCCACATC
CAGTGCCCGTCAAACAACAATTGTCCCCGCCCTCAGCTACTAGTCAACCT
CCGGCTGTAACGGCTCCCCCCACTCTCCAGGTCACGGAGAAACAGGACAA
ATCTAAATCCCCTGCCAAAGCAATCCCCCCAAAATCTTCGAAAAGACCTC
CACCATCTGCATCTCACCGTAGTCCTCGGAAGCGCGCAAAACCATCGGCC
ACCAAACAATCTCCAACTCTCACCACAAATACCCCAGGTTCACCAACGCG
GTCAGCATCCACTCCTCCTCCACCGCCATCGTCCTCCGCATCTCCACCCG
ATTCAGACTCACAAAAAGACAAGTCCGCTAAGCCTGAAACTGCTGTAATT
CCATTGAGATCTCAGACTCACGCTCAACAGCGCACTGTCCATGATCTCAA
GGCATCCGTCAAGGAAAGTGGTGGTAGTATCGCCAACTTCAGGACTTGGA
TGCGTGCCATGGCAGGAGATGATGTAGGACCAAGTGCATTCAAGCCGCCC
GCAATGCGGCGAAACGGTAGTTCAAATTCAGTTCTCGCTGAATTGTCGAA
GAATGCCGGAGTGCTCTCCCGCTCCAACTCCTTCGTACTGCCCACAGGCA
AGGGCGTGACTCGCTCCAATAGTATTCTTTCCCTTCTCAGCGGCATTCCC
ACCGTGATGAGAGAGTCCCCAAGCACAGACAGATTGCTTGGGTTGGACAC
TTCGGATGACAAGGTGCTAGCCGCCCTCAAGGCTGTGGATGCCGCCGGAA
ACGCCGCCGTAGTCGCAGGTCAGACCATGACGGCCAACAATTCGCTTGGT
ACGATGGGTGATCGAACCTTTAGTTTCAGTCAGCTTAATCATATGGGCTT
CGATGACCTCGAGGATACAGGGGCCGTTGCGCTAGCCATACAGGATGATC
AGAAGTGGAGCGACACATAG
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