Gchil3861.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3861.t1
Unique NameGchil3861.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length365
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:1090100..1091194 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3861Gchil3861Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 1090100..1091194 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3861.t1.start1Gchil3861.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 1090100..1090102 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3861.t1.CDS1Gchil3861.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1090100..1091194 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3861.t1.exon1Gchil3861.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1090100..1091194 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3861.t1.stop1Gchil3861.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 1091192..1091194 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3861.t1Gchil3861.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 1090100..1091194 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3861.t1 ID=Gchil3861.t1|Name=Gchil3861.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=365bp
MDRHPLSSFESGDLKSAAQRMDLVRTIKNEVAEAIAREFKVFVWLPEDES
MVKGQLRFWQNLCHFAIKMPSAGLALNIMEAMKRYSSSILVNSGLNLLFG
TKKMLGRVVTRTSAVTACLSFFEKFGGYDKNGINFWFDTDAFGRMQEIVI
HFAAVSEYLLRCAYRAKELKSDRISAAEQFLRLAKRCIIETNGDFKSLRF
DSTDILDDMTNTSASMCLTEAIQLTRESFDGGTQALGRLIGKRKTKSQDR
QRITLSKLGRFPVVHLDSLLENSCHHVQTIVEVFIDFDRFEVEVTRLLRV
VSAVFEETGAALRNAINSSGTEFEFQGRTDRNSAAPYRYRIANVYNTAIL
QTPQVQPPLRPDVD*
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spliced messenger RNA

>Gchil3861.t1 ID=Gchil3861.t1|Name=Gchil3861.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1095bp|location=Sequence derived from alignment at tig00000010_pilon:1090100..1091194+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAGGCACCCCTTGTCTAGTTTCGAATCAGGAGACCTAAAGTCAGC
AGCACAACGGATGGATCTAGTCAGGACAATCAAAAACGAAGTTGCTGAAG
CCATTGCGCGGGAGTTCAAGGTTTTCGTTTGGCTTCCTGAAGATGAGAGC
ATGGTTAAAGGTCAGCTGCGCTTTTGGCAGAATCTGTGCCATTTCGCAAT
CAAAATGCCTTCAGCTGGTCTTGCATTGAACATTATGGAGGCAATGAAAA
GATATTCGTCTTCAATCTTGGTGAATTCTGGATTAAACCTCTTGTTTGGA
ACGAAGAAAATGTTGGGACGAGTAGTGACTCGAACATCTGCTGTAACGGC
CTGTCTCTCGTTTTTTGAGAAGTTTGGGGGTTATGATAAGAACGGTATCA
ACTTTTGGTTTGACACAGATGCTTTTGGTCGCATGCAAGAAATTGTCATC
CATTTCGCAGCAGTTTCAGAGTATCTTCTGCGATGCGCCTATCGAGCGAA
GGAACTTAAATCAGATAGGATCTCTGCTGCTGAACAATTTCTTCGATTAG
CCAAACGATGTATTATCGAGACTAATGGGGACTTCAAGTCACTGAGGTTT
GATTCCACCGACATCCTCGACGACATGACAAATACTTCAGCAAGCATGTG
CCTAACAGAAGCTATACAACTCACCCGAGAAAGCTTCGATGGCGGAACCC
AGGCTCTGGGAAGACTGATTGGAAAGCGAAAGACAAAAAGTCAAGATCGG
CAAAGAATTACCCTCTCGAAACTGGGACGTTTTCCTGTTGTACATTTAGA
CTCACTATTAGAGAACAGCTGTCACCATGTCCAAACTATCGTGGAAGTTT
TTATCGACTTCGATCGCTTTGAAGTAGAGGTGACGCGATTGCTGCGGGTT
GTGAGTGCAGTGTTTGAAGAAACTGGCGCAGCATTGAGGAATGCAATCAA
CTCAAGTGGAACCGAATTTGAGTTCCAGGGAAGAACTGACAGGAACAGCG
CAGCGCCGTATAGATACAGAATTGCTAATGTGTACAATACTGCTATCCTC
CAAACACCCCAGGTACAACCCCCGCTGCGCCCGGACGTGGATTAG
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protein sequence of Gchil3861.t1

>Gchil3861.t1 ID=Gchil3861.t1|Name=Gchil3861.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=365bp
MDRHPLSSFESGDLKSAAQRMDLVRTIKNEVAEAIAREFKVFVWLPEDES
MVKGQLRFWQNLCHFAIKMPSAGLALNIMEAMKRYSSSILVNSGLNLLFG
TKKMLGRVVTRTSAVTACLSFFEKFGGYDKNGINFWFDTDAFGRMQEIVI
HFAAVSEYLLRCAYRAKELKSDRISAAEQFLRLAKRCIIETNGDFKSLRF
DSTDILDDMTNTSASMCLTEAIQLTRESFDGGTQALGRLIGKRKTKSQDR
QRITLSKLGRFPVVHLDSLLENSCHHVQTIVEVFIDFDRFEVEVTRLLRV
VSAVFEETGAALRNAINSSGTEFEFQGRTDRNSAAPYRYRIANVYNTAIL
QTPQVQPPLRPDVD*
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mRNA from alignment at tig00000010_pilon:1090100..1091194+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3861.t1 ID=Gchil3861.t1|Name=Gchil3861.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1095bp|location=Sequence derived from alignment at tig00000010_pilon:1090100..1091194+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACAGGCACCCCTTGTCTAGTTTCGAATCAGGAGACCTAAAGTCAGC
AGCACAACGGATGGATCTAGTCAGGACAATCAAAAACGAAGTTGCTGAAG
CCATTGCGCGGGAGTTCAAGGTTTTCGTTTGGCTTCCTGAAGATGAGAGC
ATGGTTAAAGGTCAGCTGCGCTTTTGGCAGAATCTGTGCCATTTCGCAAT
CAAAATGCCTTCAGCTGGTCTTGCATTGAACATTATGGAGGCAATGAAAA
GATATTCGTCTTCAATCTTGGTGAATTCTGGATTAAACCTCTTGTTTGGA
ACGAAGAAAATGTTGGGACGAGTAGTGACTCGAACATCTGCTGTAACGGC
CTGTCTCTCGTTTTTTGAGAAGTTTGGGGGTTATGATAAGAACGGTATCA
ACTTTTGGTTTGACACAGATGCTTTTGGTCGCATGCAAGAAATTGTCATC
CATTTCGCAGCAGTTTCAGAGTATCTTCTGCGATGCGCCTATCGAGCGAA
GGAACTTAAATCAGATAGGATCTCTGCTGCTGAACAATTTCTTCGATTAG
CCAAACGATGTATTATCGAGACTAATGGGGACTTCAAGTCACTGAGGTTT
GATTCCACCGACATCCTCGACGACATGACAAATACTTCAGCAAGCATGTG
CCTAACAGAAGCTATACAACTCACCCGAGAAAGCTTCGATGGCGGAACCC
AGGCTCTGGGAAGACTGATTGGAAAGCGAAAGACAAAAAGTCAAGATCGG
CAAAGAATTACCCTCTCGAAACTGGGACGTTTTCCTGTTGTACATTTAGA
CTCACTATTAGAGAACAGCTGTCACCATGTCCAAACTATCGTGGAAGTTT
TTATCGACTTCGATCGCTTTGAAGTAGAGGTGACGCGATTGCTGCGGGTT
GTGAGTGCAGTGTTTGAAGAAACTGGCGCAGCATTGAGGAATGCAATCAA
CTCAAGTGGAACCGAATTTGAGTTCCAGGGAAGAACTGACAGGAACAGCG
CAGCGCCGTATAGATACAGAATTGCTAATGTGTACAATACTGCTATCCTC
CAAACACCCCAGGTACAACCCCCGCTGCGCCCGGACGTGGATTAG
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Coding sequence (CDS) from alignment at tig00000010_pilon:1090100..1091194+

>Gchil3861.t1 ID=Gchil3861.t1|Name=Gchil3861.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1095bp|location=Sequence derived from alignment at tig00000010_pilon:1090100..1091194+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACAGGCACCCCTTGTCTAGTTTCGAATCAGGAGACCTAAAGTCAGC
AGCACAACGGATGGATCTAGTCAGGACAATCAAAAACGAAGTTGCTGAAG
CCATTGCGCGGGAGTTCAAGGTTTTCGTTTGGCTTCCTGAAGATGAGAGC
ATGGTTAAAGGTCAGCTGCGCTTTTGGCAGAATCTGTGCCATTTCGCAAT
CAAAATGCCTTCAGCTGGTCTTGCATTGAACATTATGGAGGCAATGAAAA
GATATTCGTCTTCAATCTTGGTGAATTCTGGATTAAACCTCTTGTTTGGA
ACGAAGAAAATGTTGGGACGAGTAGTGACTCGAACATCTGCTGTAACGGC
CTGTCTCTCGTTTTTTGAGAAGTTTGGGGGTTATGATAAGAACGGTATCA
ACTTTTGGTTTGACACAGATGCTTTTGGTCGCATGCAAGAAATTGTCATC
CATTTCGCAGCAGTTTCAGAGTATCTTCTGCGATGCGCCTATCGAGCGAA
GGAACTTAAATCAGATAGGATCTCTGCTGCTGAACAATTTCTTCGATTAG
CCAAACGATGTATTATCGAGACTAATGGGGACTTCAAGTCACTGAGGTTT
GATTCCACCGACATCCTCGACGACATGACAAATACTTCAGCAAGCATGTG
CCTAACAGAAGCTATACAACTCACCCGAGAAAGCTTCGATGGCGGAACCC
AGGCTCTGGGAAGACTGATTGGAAAGCGAAAGACAAAAAGTCAAGATCGG
CAAAGAATTACCCTCTCGAAACTGGGACGTTTTCCTGTTGTACATTTAGA
CTCACTATTAGAGAACAGCTGTCACCATGTCCAAACTATCGTGGAAGTTT
TTATCGACTTCGATCGCTTTGAAGTAGAGGTGACGCGATTGCTGCGGGTT
GTGAGTGCAGTGTTTGAAGAAACTGGCGCAGCATTGAGGAATGCAATCAA
CTCAAGTGGAACCGAATTTGAGTTCCAGGGAAGAACTGACAGGAACAGCG
CAGCGCCGTATAGATACAGAATTGCTAATGTGTACAATACTGCTATCCTC
CAAACACCCCAGGTACAACCCCCGCTGCGCCCGGACGTGGATTAG
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