Gchil3856.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3856.t2
Unique Name	Gchil3856.t2
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	574

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000010_pilon	contig	tig00000010_pilon:1019347..1021068 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	529818.AMSG_01811T0
Preferred name	NCAPD3
PFAMs	Cnd1,Cohesin_HEAT
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K08592,ko:K11491
GOs	GO:0000003,GO:0000018,GO:0000019,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000779,GO:0000785,GO:0000790,GO:0000792,GO:0000793,GO:0000794,GO:0000796,GO:0000799,GO:0000819,GO:0001674,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005720,GO:0005721,GO:0006282,GO:0006323,GO:0006996,GO:0007049,GO:0007059,GO:0007060,GO:0007076,GO:0007080,GO:0007140,GO:0007275,GO:0007276,GO:0008150,GO:0008608,GO:0009790,GO:0009792,GO:0009892,GO:0009987,GO:0010032,GO:0010605,GO:0016043,GO:0019219,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030261,GO:0031323,GO:0031324,GO:0031618,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0035064,GO:0042393,GO:0042585,GO:0043073,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0044815,GO:0045132,GO:0045910,GO:0045934,GO:0045950,GO:0048232,GO:0048285,GO:0048519,GO:0048523,GO:0048583,GO:0048609,GO:0048856,GO:0050000,GO:0050789,GO:0050794,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051276,GO:0051303,GO:0051304,GO:0051307,GO:0051310,GO:0051315,GO:0051321,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0060255,GO:0065007,GO:0070013,GO:0070192,GO:0071103,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0098687,GO:0098813,GO:0140013,GO:0140014,GO:0140030,GO:0140034,GO:1903046,GO:1903047,GO:1903775,GO:2000779,GO:2001020
Evalue	4.54e-38
EggNOG OGs	KOG0413@1\|root,KOG0413@2759\|Eukaryota
EC	3.4.22.68
Description	meiotic chromosome condensation
COG category	O
BRITE	ko00000,ko01000,ko01002,ko03036,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3856	Gchil3856	Gracilaria chilensis NLEC103_M9 male	gene	tig00000010_pilon 1017676..1021068 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3856.t2.start1	Gchil3856.t2.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000010_pilon 1019347..1019349 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3856.t2.CDS1	Gchil3856.t2.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000010_pilon 1019347..1021068 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3856.t2.exon1	Gchil3856.t2.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000010_pilon 1019347..1021068 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3856.t2.stop1	Gchil3856.t2.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000010_pilon 1021066..1021068 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3856.t2	Gchil3856.t2	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000010_pilon 1019347..1021068 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000010_pilon:1019347..1021068+
coding sequence from alignment at tig00000010_pilon:1019347..1021068+

mRNA sequence

>Gchil3856.t2 ID=Gchil3856.t2|Name=Gchil3856.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=574bp
MFITMCKKNAIGSSQLDYLSGRLKNQKEGLDERMRTGLWTVMEAISYGGK
GKEVIRSLGQTSLVDEIVAKNNAAACSTAANLVRVMDSNTKRVLQAYCTK
VLFPRLTFQESWKDSEFIRSVAKLLGKLSEEIGDELLEQCEAFIVENENG
FDDKTALALLHIIGSACVSFRLNRTPPSAVVTFVEAMTSNVQTSSIQRAV
AITTLGKLCLIEGFVQSSAPSQKEDQKDGKLLKSDVFGESLTRRLVSVFV
HELDNATSSATRNNAVVVLCDLCRHYTAIVEPFIPRLATLLNDPSEFVRV
QVISSLVDLLQQDYIKIRAGPLFYQIATGLLDSSDTVRSTAEYALLRVVS
TKNPSLLAVSFIELVFVLNGCTDGGTFNNYCIQRKHTPALGLGDHSRRQV
IYDVFLKGISLEHRLRLSGRFRTDIISNVLDEKLDFSKTSVEKVVEDVLS
LLIAQPLNPFARLRNSNNNVVDEVCDEEVDKNERGSSQQNKHFQTKKSAL
MKKVQECELRDALIPCLLELRLFLEKRRSPTTKKVMECLCALLHTHRESL
NTMIEDPVIRSEIEHQMLKGDEK*

spliced messenger RNA

>Gchil3856.t2 ID=Gchil3856.t2|Name=Gchil3856.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1722bp|location=Sequence derived from alignment at tig00000010_pilon:1019347..1021068+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTATTACCATGTGCAAGAAGAATGCAATTGGGTCTTCTCAACTCGA
TTACCTTTCTGGTAGGCTGAAGAACCAGAAAGAAGGCTTAGATGAACGAA
TGAGAACAGGATTATGGACTGTGATGGAGGCCATATCATACGGTGGTAAA
GGAAAGGAGGTTATTCGGTCCCTTGGACAAACAAGTTTGGTTGACGAAAT
TGTCGCAAAGAATAATGCGGCGGCATGTTCAACGGCAGCGAATCTAGTGA
GAGTAATGGATTCGAACACGAAACGCGTCTTGCAAGCGTATTGTACAAAA
GTTCTGTTCCCACGGCTCACGTTTCAAGAATCATGGAAGGATAGCGAATT
CATTCGCTCCGTCGCAAAACTGCTCGGAAAGCTTTCAGAAGAAATCGGAG
ACGAACTTCTAGAACAATGCGAAGCGTTTATTGTCGAAAATGAAAATGGT
TTCGATGACAAAACAGCTTTAGCCCTTCTGCACATAATTGGTAGTGCATG
TGTGTCTTTTCGATTGAACAGGACGCCTCCATCTGCTGTAGTTACCTTTG
TCGAAGCAATGACCAGCAATGTTCAGACGTCTTCTATTCAACGGGCTGTT
GCTATTACCACGCTGGGCAAACTATGTCTTATCGAAGGGTTTGTCCAATC
CTCTGCACCTTCGCAAAAAGAGGACCAAAAAGACGGAAAGCTCCTGAAAT
CGGATGTCTTCGGGGAGTCTCTTACAAGGCGTTTGGTCTCAGTTTTTGTG
CACGAATTGGATAATGCGACCAGCAGTGCCACAAGAAATAATGCAGTTGT
GGTTTTATGTGACTTATGCCGTCATTACACGGCTATTGTTGAGCCATTTA
TTCCACGATTGGCAACCCTTCTTAACGATCCTTCAGAATTTGTAAGGGTT
CAAGTCATCTCATCTTTGGTGGATCTTCTTCAACAGGATTATATCAAGAT
CAGGGCAGGACCTCTTTTTTACCAAATTGCAACGGGATTGCTCGACTCAT
CAGACACAGTTCGCTCTACCGCGGAATATGCGTTGTTGAGAGTTGTATCG
ACGAAGAATCCCTCTCTGCTCGCTGTCTCCTTCATTGAACTTGTTTTCGT
TTTGAATGGCTGCACAGATGGTGGGACTTTTAATAATTACTGTATTCAAA
GGAAGCATACACCGGCATTGGGACTCGGGGATCACTCAAGAAGGCAAGTG
ATATACGACGTATTTCTAAAAGGAATCAGCCTAGAACATCGTCTCCGTCT
TTCCGGCCGATTTCGTACAGACATCATATCCAATGTTCTAGATGAAAAAC
TGGACTTTTCGAAAACCTCTGTGGAAAAAGTAGTCGAAGATGTTCTTAGT
CTGCTCATCGCTCAGCCTTTAAATCCGTTCGCAAGATTGCGTAATTCAAA
TAATAATGTGGTGGACGAAGTATGTGATGAGGAAGTCGACAAAAACGAAC
GTGGTTCATCTCAACAAAACAAACATTTCCAGACGAAAAAGTCAGCTTTG
ATGAAGAAAGTTCAAGAATGTGAGCTTCGAGACGCTCTGATTCCGTGTCT
TCTTGAGCTGCGTTTGTTCCTAGAAAAGCGCCGTTCTCCAACGACCAAGA
AGGTCATGGAATGCCTTTGCGCTCTCTTACACACACACCGTGAATCTCTC
AACACAATGATCGAGGATCCAGTAATTCGATCAGAGATTGAACACCAAAT
GCTGAAAGGCGATGAGAAGTGA

protein sequence of Gchil3856.t2

>Gchil3856.t2 ID=Gchil3856.t2|Name=Gchil3856.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=574bp
MFITMCKKNAIGSSQLDYLSGRLKNQKEGLDERMRTGLWTVMEAISYGGK
GKEVIRSLGQTSLVDEIVAKNNAAACSTAANLVRVMDSNTKRVLQAYCTK
VLFPRLTFQESWKDSEFIRSVAKLLGKLSEEIGDELLEQCEAFIVENENG
FDDKTALALLHIIGSACVSFRLNRTPPSAVVTFVEAMTSNVQTSSIQRAV
AITTLGKLCLIEGFVQSSAPSQKEDQKDGKLLKSDVFGESLTRRLVSVFV
HELDNATSSATRNNAVVVLCDLCRHYTAIVEPFIPRLATLLNDPSEFVRV
QVISSLVDLLQQDYIKIRAGPLFYQIATGLLDSSDTVRSTAEYALLRVVS
TKNPSLLAVSFIELVFVLNGCTDGGTFNNYCIQRKHTPALGLGDHSRRQV
IYDVFLKGISLEHRLRLSGRFRTDIISNVLDEKLDFSKTSVEKVVEDVLS
LLIAQPLNPFARLRNSNNNVVDEVCDEEVDKNERGSSQQNKHFQTKKSAL
MKKVQECELRDALIPCLLELRLFLEKRRSPTTKKVMECLCALLHTHRESL
NTMIEDPVIRSEIEHQMLKGDEK*

mRNA from alignment at tig00000010_pilon:1019347..1021068+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3856.t2 ID=Gchil3856.t2|Name=Gchil3856.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1722bp|location=Sequence derived from alignment at tig00000010_pilon:1019347..1021068+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTTATTACCATGTGCAAGAAGAATGCAATTGGGTCTTCTCAACTCGA
TTACCTTTCTGGTAGGCTGAAGAACCAGAAAGAAGGCTTAGATGAACGAA
TGAGAACAGGATTATGGACTGTGATGGAGGCCATATCATACGGTGGTAAA
GGAAAGGAGGTTATTCGGTCCCTTGGACAAACAAGTTTGGTTGACGAAAT
TGTCGCAAAGAATAATGCGGCGGCATGTTCAACGGCAGCGAATCTAGTGA
GAGTAATGGATTCGAACACGAAACGCGTCTTGCAAGCGTATTGTACAAAA
GTTCTGTTCCCACGGCTCACGTTTCAAGAATCATGGAAGGATAGCGAATT
CATTCGCTCCGTCGCAAAACTGCTCGGAAAGCTTTCAGAAGAAATCGGAG
ACGAACTTCTAGAACAATGCGAAGCGTTTATTGTCGAAAATGAAAATGGT
TTCGATGACAAAACAGCTTTAGCCCTTCTGCACATAATTGGTAGTGCATG
TGTGTCTTTTCGATTGAACAGGACGCCTCCATCTGCTGTAGTTACCTTTG
TCGAAGCAATGACCAGCAATGTTCAGACGTCTTCTATTCAACGGGCTGTT
GCTATTACCACGCTGGGCAAACTATGTCTTATCGAAGGGTTTGTCCAATC
CTCTGCACCTTCGCAAAAAGAGGACCAAAAAGACGGAAAGCTCCTGAAAT
CGGATGTCTTCGGGGAGTCTCTTACAAGGCGTTTGGTCTCAGTTTTTGTG
CACGAATTGGATAATGCGACCAGCAGTGCCACAAGAAATAATGCAGTTGT
GGTTTTATGTGACTTATGCCGTCATTACACGGCTATTGTTGAGCCATTTA
TTCCACGATTGGCAACCCTTCTTAACGATCCTTCAGAATTTGTAAGGGTT
CAAGTCATCTCATCTTTGGTGGATCTTCTTCAACAGGATTATATCAAGAT
CAGGGCAGGACCTCTTTTTTACCAAATTGCAACGGGATTGCTCGACTCAT
CAGACACAGTTCGCTCTACCGCGGAATATGCGTTGTTGAGAGTTGTATCG
ACGAAGAATCCCTCTCTGCTCGCTGTCTCCTTCATTGAACTTGTTTTCGT
TTTGAATGGCTGCACAGATGGTGGGACTTTTAATAATTACTGTATTCAAA
GGAAGCATACACCGGCATTGGGACTCGGGGATCACTCAAGAAGGCAAGTG
ATATACGACGTATTTCTAAAAGGAATCAGCCTAGAACATCGTCTCCGTCT
TTCCGGCCGATTTCGTACAGACATCATATCCAATGTTCTAGATGAAAAAC
TGGACTTTTCGAAAACCTCTGTGGAAAAAGTAGTCGAAGATGTTCTTAGT
CTGCTCATCGCTCAGCCTTTAAATCCGTTCGCAAGATTGCGTAATTCAAA
TAATAATGTGGTGGACGAAGTATGTGATGAGGAAGTCGACAAAAACGAAC
GTGGTTCATCTCAACAAAACAAACATTTCCAGACGAAAAAGTCAGCTTTG
ATGAAGAAAGTTCAAGAATGTGAGCTTCGAGACGCTCTGATTCCGTGTCT
TCTTGAGCTGCGTTTGTTCCTAGAAAAGCGCCGTTCTCCAACGACCAAGA
AGGTCATGGAATGCCTTTGCGCTCTCTTACACACACACCGTGAATCTCTC
AACACAATGATCGAGGATCCAGTAATTCGATCAGAGATTGAACACCAAAT
GCTGAAAGGCGATGAGAAGTGA

Coding sequence (CDS) from alignment at tig00000010_pilon:1019347..1021068+

>Gchil3856.t2 ID=Gchil3856.t2|Name=Gchil3856.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1722bp|location=Sequence derived from alignment at tig00000010_pilon:1019347..1021068+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTTATTACCATGTGCAAGAAGAATGCAATTGGGTCTTCTCAACTCGA
TTACCTTTCTGGTAGGCTGAAGAACCAGAAAGAAGGCTTAGATGAACGAA
TGAGAACAGGATTATGGACTGTGATGGAGGCCATATCATACGGTGGTAAA
GGAAAGGAGGTTATTCGGTCCCTTGGACAAACAAGTTTGGTTGACGAAAT
TGTCGCAAAGAATAATGCGGCGGCATGTTCAACGGCAGCGAATCTAGTGA
GAGTAATGGATTCGAACACGAAACGCGTCTTGCAAGCGTATTGTACAAAA
GTTCTGTTCCCACGGCTCACGTTTCAAGAATCATGGAAGGATAGCGAATT
CATTCGCTCCGTCGCAAAACTGCTCGGAAAGCTTTCAGAAGAAATCGGAG
ACGAACTTCTAGAACAATGCGAAGCGTTTATTGTCGAAAATGAAAATGGT
TTCGATGACAAAACAGCTTTAGCCCTTCTGCACATAATTGGTAGTGCATG
TGTGTCTTTTCGATTGAACAGGACGCCTCCATCTGCTGTAGTTACCTTTG
TCGAAGCAATGACCAGCAATGTTCAGACGTCTTCTATTCAACGGGCTGTT
GCTATTACCACGCTGGGCAAACTATGTCTTATCGAAGGGTTTGTCCAATC
CTCTGCACCTTCGCAAAAAGAGGACCAAAAAGACGGAAAGCTCCTGAAAT
CGGATGTCTTCGGGGAGTCTCTTACAAGGCGTTTGGTCTCAGTTTTTGTG
CACGAATTGGATAATGCGACCAGCAGTGCCACAAGAAATAATGCAGTTGT
GGTTTTATGTGACTTATGCCGTCATTACACGGCTATTGTTGAGCCATTTA
TTCCACGATTGGCAACCCTTCTTAACGATCCTTCAGAATTTGTAAGGGTT
CAAGTCATCTCATCTTTGGTGGATCTTCTTCAACAGGATTATATCAAGAT
CAGGGCAGGACCTCTTTTTTACCAAATTGCAACGGGATTGCTCGACTCAT
CAGACACAGTTCGCTCTACCGCGGAATATGCGTTGTTGAGAGTTGTATCG
ACGAAGAATCCCTCTCTGCTCGCTGTCTCCTTCATTGAACTTGTTTTCGT
TTTGAATGGCTGCACAGATGGTGGGACTTTTAATAATTACTGTATTCAAA
GGAAGCATACACCGGCATTGGGACTCGGGGATCACTCAAGAAGGCAAGTG
ATATACGACGTATTTCTAAAAGGAATCAGCCTAGAACATCGTCTCCGTCT
TTCCGGCCGATTTCGTACAGACATCATATCCAATGTTCTAGATGAAAAAC
TGGACTTTTCGAAAACCTCTGTGGAAAAAGTAGTCGAAGATGTTCTTAGT
CTGCTCATCGCTCAGCCTTTAAATCCGTTCGCAAGATTGCGTAATTCAAA
TAATAATGTGGTGGACGAAGTATGTGATGAGGAAGTCGACAAAAACGAAC
GTGGTTCATCTCAACAAAACAAACATTTCCAGACGAAAAAGTCAGCTTTG
ATGAAGAAAGTTCAAGAATGTGAGCTTCGAGACGCTCTGATTCCGTGTCT
TCTTGAGCTGCGTTTGTTCCTAGAAAAGCGCCGTTCTCCAACGACCAAGA
AGGTCATGGAATGCCTTTGCGCTCTCTTACACACACACCGTGAATCTCTC
AACACAATGATCGAGGATCCAGTAATTCGATCAGAGATTGAACACCAAAT
GCTGAAAGGCGATGAGAAGTGA