Gchil3854.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3854.t1
Unique NameGchil3854.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length241
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:1007359..1008167 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708955.1
PFAMsAlba
Max annot lvl2759|Eukaryota
Evalue7.52e-16
EggNOG OGs2CZ1U@1|root,2S7WJ@2759|Eukaryota
DescriptionAlba
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3854Gchil3854Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 1007359..1008167 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3854.t1Gchil3854.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 1007359..1008167 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3854.t1.start1Gchil3854.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 1007359..1007361 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3854.t1.CDS1Gchil3854.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1007359..1007878 +
Gchil3854.t1.CDS2Gchil3854.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1007965..1008167 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3854.t1.exon1Gchil3854.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1007359..1007878 +
Gchil3854.t1.exon2Gchil3854.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1007965..1008167 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3854.t1.intron1Gchil3854.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000010_pilon 1007879..1007964 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3854.t1.stop1Gchil3854.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 1008165..1008167 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3854.t1 ID=Gchil3854.t1|Name=Gchil3854.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=241bp
MRVVCKPLVQVSAQRHAYTFTPLYRQSSDAPTQHVKRVARFRPPQSLRAI
VPSSPSSAAAAVSAVTAYRSWLRTCTMTPSASVVSAGPNDTALDPDAKPA
VDIKQPPAQAQNGRTCRRIQVSRDKRPVHFFVALAKKFLISDFQIELSGL
GLAVVNVVTIAEHLREAGIASIEDIQTSLVEATKGNLSTPKAKIQIWLTR
IDGAHQQDNCTNNQVESSPEHAGDTNPRLDSEGVTTSRTS*
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spliced messenger RNA

>Gchil3854.t1 ID=Gchil3854.t1|Name=Gchil3854.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=723bp|location=Sequence derived from alignment at tig00000010_pilon:1007359..1008167+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGTAGTGTGTAAGCCACTAGTGCAAGTATCCGCGCAGCGCCACGC
GTACACATTCACCCCGCTCTACCGACAGTCCTCCGACGCTCCAACCCAGC
ATGTAAAACGCGTCGCTCGCTTCCGTCCGCCCCAGTCCCTCCGCGCCATC
GTCCCTTCCAGCCCTTCTTCGGCCGCTGCTGCTGTTTCCGCTGTTACTGC
TTATCGTTCTTGGTTGCGTACTTGCACAATGACGCCCTCTGCTTCCGTGG
TCTCTGCCGGTCCGAATGACACTGCCCTTGATCCCGATGCAAAGCCTGCT
GTTGACATCAAACAACCGCCTGCACAGGCCCAAAACGGACGCACCTGTCG
ACGCATTCAAGTCTCGCGCGACAAGCGGCCTGTTCACTTCTTCGTCGCTC
TTGCTAAGAAATTTCTAATCTCTGACTTCCAAATCGAGTTGAGTGGGTTA
GGACTGGCAGTAGTCAACGTTGTAACAATCGCTGAACATCTGCGGGAAGC
AGGTATAGCATCCATTGAAGACATCCAAACATCGTTGGTAGAAGCTACAA
AGGGAAATTTGTCGACCCCAAAGGCAAAGATCCAGATATGGCTTACTCGC
ATTGATGGCGCACATCAGCAAGATAACTGTACTAACAACCAAGTAGAATC
GTCTCCCGAGCATGCGGGTGATACCAATCCACGCCTCGACTCAGAAGGGG
TCACTACTTCACGAACGTCGTGA
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protein sequence of Gchil3854.t1

>Gchil3854.t1 ID=Gchil3854.t1|Name=Gchil3854.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=241bp
MRVVCKPLVQVSAQRHAYTFTPLYRQSSDAPTQHVKRVARFRPPQSLRAI
VPSSPSSAAAAVSAVTAYRSWLRTCTMTPSASVVSAGPNDTALDPDAKPA
VDIKQPPAQAQNGRTCRRIQVSRDKRPVHFFVALAKKFLISDFQIELSGL
GLAVVNVVTIAEHLREAGIASIEDIQTSLVEATKGNLSTPKAKIQIWLTR
IDGAHQQDNCTNNQVESSPEHAGDTNPRLDSEGVTTSRTS*
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mRNA from alignment at tig00000010_pilon:1007359..1008167+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3854.t1 ID=Gchil3854.t1|Name=Gchil3854.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=809bp|location=Sequence derived from alignment at tig00000010_pilon:1007359..1008167+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGCGTAGTGTGTAAGCCACTAGTGCAAGTATCCGCGCAGCGCCACGC
GTACACATTCACCCCGCTCTACCGACAGTCCTCCGACGCTCCAACCCAGC
ATGTAAAACGCGTCGCTCGCTTCCGTCCGCCCCAGTCCCTCCGCGCCATC
GTCCCTTCCAGCCCTTCTTCGGCCGCTGCTGCTGTTTCCGCTGTTACTGC
TTATCGTTCTTGGTTGCGTACTTGCACAATGACGCCCTCTGCTTCCGTGG
TCTCTGCCGGTCCGAATGACACTGCCCTTGATCCCGATGCAAAGCCTGCT
GTTGACATCAAACAACCGCCTGCACAGGCCCAAAACGGACGCACCTGTCG
ACGCATTCAAGTCTCGCGCGACAAGCGGCCTGTTCACTTCTTCGTCGCTC
TTGCTAAGAAATTTCTAATCTCTGACTTCCAAATCGAGTTGAGTGGGTTA
GGACTGGCAGTAGTCAACGTTGTAACAATCGCTGAACATCTGCGGGAAGC
AGGTATAGCATCCATTGAAGGTACGTACACTAGCAACCTGCACCGAAGCT
AACGCGTTTCTAACCGACGCGTCCGTGTGTTTTTGCGTTTGTGCGTGTGC
TGGCAGACATCCAAACATCGTTGGTAGAAGCTACAAAGGGAAATTTGTCG
ACCCCAAAGGCAAAGATCCAGATATGGCTTACTCGCATTGATGGCGCACA
TCAGCAAGATAACTGTACTAACAACCAAGTAGAATCGTCTCCCGAGCATG
CGGGTGATACCAATCCACGCCTCGACTCAGAAGGGGTCACTACTTCACGA
ACGTCGTGA
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Coding sequence (CDS) from alignment at tig00000010_pilon:1007359..1008167+

>Gchil3854.t1 ID=Gchil3854.t1|Name=Gchil3854.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=723bp|location=Sequence derived from alignment at tig00000010_pilon:1007359..1008167+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGCGTAGTGTGTAAGCCACTAGTGCAAGTATCCGCGCAGCGCCACGC
GTACACATTCACCCCGCTCTACCGACAGTCCTCCGACGCTCCAACCCAGC
ATGTAAAACGCGTCGCTCGCTTCCGTCCGCCCCAGTCCCTCCGCGCCATC
GTCCCTTCCAGCCCTTCTTCGGCCGCTGCTGCTGTTTCCGCTGTTACTGC
TTATCGTTCTTGGTTGCGTACTTGCACAATGACGCCCTCTGCTTCCGTGG
TCTCTGCCGGTCCGAATGACACTGCCCTTGATCCCGATGCAAAGCCTGCT
GTTGACATCAAACAACCGCCTGCACAGGCCCAAAACGGACGCACCTGTCG
ACGCATTCAAGTCTCGCGCGACAAGCGGCCTGTTCACTTCTTCGTCGCTC
TTGCTAAGAAATTTCTAATCTCTGACTTCCAAATCGAGTTGAGTGGGTTA
GGACTGGCAGTAGTCAACGTTGTAACAATCGCTGAACATCTGCGGGAAGC
AGGTATAGCATCCATTGAAGACATCCAAACATCGTTGGTAGAAGCTACAA
AGGGAAATTTGTCGACCCCAAAGGCAAAGATCCAGATATGGCTTACTCGC
ATTGATGGCGCACATCAGCAAGATAACTGTACTAACAACCAAGTAGAATC
GTCTCCCGAGCATGCGGGTGATACCAATCCACGCCTCGACTCAGAAGGGG
TCACTACTTCACGAACGTCGTGA
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