Gchil3850.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3850.t1
Unique NameGchil3850.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length647
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:942667..944940 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705591.1
PFAMsPHM7_cyt,RSN1_7TM,RSN1_TM
Max annot lvl2759|Eukaryota
KEGG koko:K21989
Evalue9.12e-44
EggNOG OGsCOG5594@1|root,KOG1134@2759|Eukaryota
Descriptionion transport
COG categoryI
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3850Gchil3850Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 942667..944940 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3850.t1Gchil3850.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 942667..944940 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3850.t1.stop1Gchil3850.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 942667..942669 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3850.t1.CDS1Gchil3850.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 942667..943204 -
Gchil3850.t1.CDS2Gchil3850.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 943538..944940 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3850.t1.exon1Gchil3850.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 942667..943204 -
Gchil3850.t1.exon2Gchil3850.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 943538..944940 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3850.t1.intron1Gchil3850.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000010_pilon 943205..943537 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3850.t1.start1Gchil3850.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 944938..944940 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3850.t1 ID=Gchil3850.t1|Name=Gchil3850.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=647bp
MALDSATGGFLYGLAIAVALGIVFTLAFCILRNRVPDVYYHRRLLNTWMS
YDDYNGNRVGLTYPPPSDSFFGWIKPLFATPERQVARKIGLDAAMFLRFI
RTCFTILVIVGTFSVVILMPVFGTGRINSTLDNPNDPSRVEGLRIISLAN
VPPQSDRLWVVVVTEFVVAAVVLYFMRADYKLYANYRREFRNSETPVNYA
LAVLDIPEDCRNEEAVRRRFELVVPGQISEVIIMKQCANAVKLKNKLEAA
VTKRELAEYIKSVKGVSPEFRPGVCGCMMCHKPKVDALDYWQNEQEKLST
ELLEAGNEATITPSAILVLTNKRAASVLAQANVATSATAWNLCRAGEPNN
INWAAFSVPSYQAEMRTVAVAAFVVVFTLFWTIPAAAIAALFSLQKLGEL
DGFGWTTKIEDTSAQLASLIEGLLPVIVMSVLISLIPTLFRFLVSQERVV
SYSIVERKTRDYFFFFTVFSPLVPLCGIVYFGIAFLGFKYMLLFSCFQPW
EGGGDMYTGAYWGTFCGLILKQLVVIAVLGLKKAPAPAIVCIIPTIATIL
LSIVIAKRYERISEHGSLHDMFESSSKLNEIPSTYSGVYKQPGARVPEFS
NLNGVEEAVDTYGEPDYGTESEGLESEHPNEQVGYVPDRAAKREEV*
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spliced messenger RNA

>Gchil3850.t1 ID=Gchil3850.t1|Name=Gchil3850.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1941bp|location=Sequence derived from alignment at tig00000010_pilon:942667..944940- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTCGACAGCGCTACCGGCGGTTTTCTGTACGGTCTTGCCATCGC
CGTTGCGCTTGGAATCGTCTTTACCCTTGCTTTTTGCATCTTACGCAACC
GAGTTCCAGACGTTTACTATCATCGCCGCTTGTTGAATACATGGATGTCC
TACGATGATTACAATGGCAACAGGGTTGGCCTCACTTACCCTCCCCCCTC
CGATTCCTTTTTCGGATGGATCAAACCTCTTTTCGCCACCCCAGAACGCC
AAGTTGCCCGCAAGATAGGCTTGGACGCTGCCATGTTTCTGCGCTTCATC
CGCACCTGTTTCACCATCCTTGTCATCGTCGGCACTTTCTCGGTTGTCAT
CCTCATGCCTGTGTTCGGCACGGGACGCATCAATAGCACGCTTGACAATC
CCAATGACCCCAGTCGTGTTGAGGGTCTGCGAATCATCTCGCTTGCAAAC
GTGCCCCCGCAAAGCGATAGGTTGTGGGTCGTCGTCGTCACCGAGTTTGT
TGTCGCCGCTGTCGTGCTCTACTTCATGAGGGCCGACTACAAGCTCTATG
CCAACTATCGACGCGAATTTCGAAACTCCGAAACCCCCGTCAACTATGCT
TTGGCCGTGCTTGACATCCCCGAAGACTGTCGCAACGAGGAAGCCGTTCG
TCGCCGATTTGAACTCGTCGTGCCTGGTCAAATCTCCGAGGTTATCATCA
TGAAGCAATGTGCAAACGCCGTCAAACTCAAGAACAAGCTTGAAGCCGCC
GTCACAAAGCGTGAGCTTGCAGAGTACATCAAGTCCGTCAAGGGAGTCAG
CCCCGAGTTTCGTCCTGGAGTGTGTGGATGCATGATGTGCCACAAACCCA
AGGTGGACGCCCTTGATTACTGGCAGAACGAACAGGAGAAGCTCAGTACT
GAACTGCTTGAGGCAGGCAACGAAGCCACTATCACCCCATCCGCCATTCT
TGTGCTCACCAACAAGCGTGCCGCGTCTGTATTGGCACAGGCCAACGTTG
CTACAAGCGCCACTGCTTGGAATTTATGTCGCGCGGGCGAGCCGAACAAT
ATCAACTGGGCGGCGTTTTCTGTGCCCAGTTACCAAGCCGAAATGCGCAC
AGTTGCCGTCGCTGCCTTTGTTGTTGTGTTCACACTGTTCTGGACCATTC
CTGCAGCTGCGATAGCTGCTCTGTTCAGTTTGCAAAAGCTCGGCGAACTT
GACGGATTTGGCTGGACCACAAAAATCGAGGATACTAGCGCTCAATTGGC
CTCACTTATCGAAGGTTTGCTCCCTGTCATTGTTATGTCTGTTCTTATCA
GTTTGATTCCGACGCTGTTCCGATTTCTTGTCAGCCAAGAACGAGTCGTG
TCGTACTCGATTGTTGAGAGGAAGACGAGGGACTACTTCTTTTTCTTCAC
TGTTTTCTCTCCATTGGTGCCTCTATGCGGTATCGTGTACTTCGGTATCG
CATTCCTTGGGTTCAAGTACATGTTGCTGTTCAGCTGCTTCCAGCCCTGG
GAGGGAGGCGGTGATATGTACACCGGCGCATATTGGGGTACATTCTGCGG
CCTCATTCTTAAGCAGTTGGTCGTGATCGCCGTGCTTGGTCTCAAGAAGG
CACCCGCTCCAGCAATTGTGTGTATCATTCCCACAATTGCCACAATCCTG
CTGTCGATCGTCATTGCTAAACGATACGAAAGAATTTCGGAGCATGGAAG
TTTGCATGACATGTTTGAAAGCTCATCGAAACTTAATGAAATTCCCAGCA
CGTACAGTGGCGTGTACAAGCAACCTGGCGCAAGAGTTCCAGAGTTTTCT
AATTTGAATGGTGTTGAAGAGGCGGTGGATACATACGGAGAACCTGATTA
CGGAACGGAAAGCGAAGGACTAGAATCCGAGCATCCGAATGAACAAGTTG
GATACGTACCAGATCGGGCTGCGAAGAGAGAGGAAGTGTAA
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protein sequence of Gchil3850.t1

>Gchil3850.t1 ID=Gchil3850.t1|Name=Gchil3850.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=647bp
MALDSATGGFLYGLAIAVALGIVFTLAFCILRNRVPDVYYHRRLLNTWMS
YDDYNGNRVGLTYPPPSDSFFGWIKPLFATPERQVARKIGLDAAMFLRFI
RTCFTILVIVGTFSVVILMPVFGTGRINSTLDNPNDPSRVEGLRIISLAN
VPPQSDRLWVVVVTEFVVAAVVLYFMRADYKLYANYRREFRNSETPVNYA
LAVLDIPEDCRNEEAVRRRFELVVPGQISEVIIMKQCANAVKLKNKLEAA
VTKRELAEYIKSVKGVSPEFRPGVCGCMMCHKPKVDALDYWQNEQEKLST
ELLEAGNEATITPSAILVLTNKRAASVLAQANVATSATAWNLCRAGEPNN
INWAAFSVPSYQAEMRTVAVAAFVVVFTLFWTIPAAAIAALFSLQKLGEL
DGFGWTTKIEDTSAQLASLIEGLLPVIVMSVLISLIPTLFRFLVSQERVV
SYSIVERKTRDYFFFFTVFSPLVPLCGIVYFGIAFLGFKYMLLFSCFQPW
EGGGDMYTGAYWGTFCGLILKQLVVIAVLGLKKAPAPAIVCIIPTIATIL
LSIVIAKRYERISEHGSLHDMFESSSKLNEIPSTYSGVYKQPGARVPEFS
NLNGVEEAVDTYGEPDYGTESEGLESEHPNEQVGYVPDRAAKREEV*
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mRNA from alignment at tig00000010_pilon:942667..944940-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3850.t1 ID=Gchil3850.t1|Name=Gchil3850.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2274bp|location=Sequence derived from alignment at tig00000010_pilon:942667..944940- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCTCGACAGCGCTACCGGCGGTTTTCTGTACGGTCTTGCCATCGC
CGTTGCGCTTGGAATCGTCTTTACCCTTGCTTTTTGCATCTTACGCAACC
GAGTTCCAGACGTTTACTATCATCGCCGCTTGTTGAATACATGGATGTCC
TACGATGATTACAATGGCAACAGGGTTGGCCTCACTTACCCTCCCCCCTC
CGATTCCTTTTTCGGATGGATCAAACCTCTTTTCGCCACCCCAGAACGCC
AAGTTGCCCGCAAGATAGGCTTGGACGCTGCCATGTTTCTGCGCTTCATC
CGCACCTGTTTCACCATCCTTGTCATCGTCGGCACTTTCTCGGTTGTCAT
CCTCATGCCTGTGTTCGGCACGGGACGCATCAATAGCACGCTTGACAATC
CCAATGACCCCAGTCGTGTTGAGGGTCTGCGAATCATCTCGCTTGCAAAC
GTGCCCCCGCAAAGCGATAGGTTGTGGGTCGTCGTCGTCACCGAGTTTGT
TGTCGCCGCTGTCGTGCTCTACTTCATGAGGGCCGACTACAAGCTCTATG
CCAACTATCGACGCGAATTTCGAAACTCCGAAACCCCCGTCAACTATGCT
TTGGCCGTGCTTGACATCCCCGAAGACTGTCGCAACGAGGAAGCCGTTCG
TCGCCGATTTGAACTCGTCGTGCCTGGTCAAATCTCCGAGGTTATCATCA
TGAAGCAATGTGCAAACGCCGTCAAACTCAAGAACAAGCTTGAAGCCGCC
GTCACAAAGCGTGAGCTTGCAGAGTACATCAAGTCCGTCAAGGGAGTCAG
CCCCGAGTTTCGTCCTGGAGTGTGTGGATGCATGATGTGCCACAAACCCA
AGGTGGACGCCCTTGATTACTGGCAGAACGAACAGGAGAAGCTCAGTACT
GAACTGCTTGAGGCAGGCAACGAAGCCACTATCACCCCATCCGCCATTCT
TGTGCTCACCAACAAGCGTGCCGCGTCTGTATTGGCACAGGCCAACGTTG
CTACAAGCGCCACTGCTTGGAATTTATGTCGCGCGGGCGAGCCGAACAAT
ATCAACTGGGCGGCGTTTTCTGTGCCCAGTTACCAAGCCGAAATGCGCAC
AGTTGCCGTCGCTGCCTTTGTTGTTGTGTTCACACTGTTCTGGACCATTC
CTGCAGCTGCGATAGCTGCTCTGTTCAGTTTGCAAAAGCTCGGCGAACTT
GACGGATTTGGCTGGACCACAAAAATCGAGGATACTAGCGCTCAATTGGC
CTCACTTATCGAAGGTTTGCTCCCTGTCATTGTTATGTCTGTTCTTATCA
GTTTGATTCCGACGCTGTTCCGATTTCTTGTCAGCCAAGAACGAGTCGTG
TCGTACTCGATTGTTGAGAGGAAGACGAGGGACTACTTCTTTTTCTTCAC
TGTGTACGGTTCATTCTTTGTCATTGTGCTTGGAAGTTCCTTTTTCCAGA
ATCCGCAAAAGATCATTGATGATCCGGTTCAGGTCATTGACAGTCTGGCG
AGCGAAGTGCCTGGTAATGGTGTATTCTTCGCAACCTTCATCCTGTGGCA
GGCGCTTTTCGCACTTCCGTTGATGTTCAGTGGTGTTGTGCGCGTTATTG
TTCGCTTCATCATGATGAAGCTTTCAAAAACTGAGCGTCAGCAACGCAAG
GCTCGCACTGGAGGTGGTGTGTTCCAATTCTTCCGCTACTCTGGACATGC
GATGCTCATCATGTTTCTCTCTCTCATGTACACAAGTTTCTCTCCATTGG
TGCCTCTATGCGGTATCGTGTACTTCGGTATCGCATTCCTTGGGTTCAAG
TACATGTTGCTGTTCAGCTGCTTCCAGCCCTGGGAGGGAGGCGGTGATAT
GTACACCGGCGCATATTGGGGTACATTCTGCGGCCTCATTCTTAAGCAGT
TGGTCGTGATCGCCGTGCTTGGTCTCAAGAAGGCACCCGCTCCAGCAATT
GTGTGTATCATTCCCACAATTGCCACAATCCTGCTGTCGATCGTCATTGC
TAAACGATACGAAAGAATTTCGGAGCATGGAAGTTTGCATGACATGTTTG
AAAGCTCATCGAAACTTAATGAAATTCCCAGCACGTACAGTGGCGTGTAC
AAGCAACCTGGCGCAAGAGTTCCAGAGTTTTCTAATTTGAATGGTGTTGA
AGAGGCGGTGGATACATACGGAGAACCTGATTACGGAACGGAAAGCGAAG
GACTAGAATCCGAGCATCCGAATGAACAAGTTGGATACGTACCAGATCGG
GCTGCGAAGAGAGAGGAAGTGTAA
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Coding sequence (CDS) from alignment at tig00000010_pilon:942667..944940-

>Gchil3850.t1 ID=Gchil3850.t1|Name=Gchil3850.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1941bp|location=Sequence derived from alignment at tig00000010_pilon:942667..944940- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCTCGACAGCGCTACCGGCGGTTTTCTGTACGGTCTTGCCATCGC
CGTTGCGCTTGGAATCGTCTTTACCCTTGCTTTTTGCATCTTACGCAACC
GAGTTCCAGACGTTTACTATCATCGCCGCTTGTTGAATACATGGATGTCC
TACGATGATTACAATGGCAACAGGGTTGGCCTCACTTACCCTCCCCCCTC
CGATTCCTTTTTCGGATGGATCAAACCTCTTTTCGCCACCCCAGAACGCC
AAGTTGCCCGCAAGATAGGCTTGGACGCTGCCATGTTTCTGCGCTTCATC
CGCACCTGTTTCACCATCCTTGTCATCGTCGGCACTTTCTCGGTTGTCAT
CCTCATGCCTGTGTTCGGCACGGGACGCATCAATAGCACGCTTGACAATC
CCAATGACCCCAGTCGTGTTGAGGGTCTGCGAATCATCTCGCTTGCAAAC
GTGCCCCCGCAAAGCGATAGGTTGTGGGTCGTCGTCGTCACCGAGTTTGT
TGTCGCCGCTGTCGTGCTCTACTTCATGAGGGCCGACTACAAGCTCTATG
CCAACTATCGACGCGAATTTCGAAACTCCGAAACCCCCGTCAACTATGCT
TTGGCCGTGCTTGACATCCCCGAAGACTGTCGCAACGAGGAAGCCGTTCG
TCGCCGATTTGAACTCGTCGTGCCTGGTCAAATCTCCGAGGTTATCATCA
TGAAGCAATGTGCAAACGCCGTCAAACTCAAGAACAAGCTTGAAGCCGCC
GTCACAAAGCGTGAGCTTGCAGAGTACATCAAGTCCGTCAAGGGAGTCAG
CCCCGAGTTTCGTCCTGGAGTGTGTGGATGCATGATGTGCCACAAACCCA
AGGTGGACGCCCTTGATTACTGGCAGAACGAACAGGAGAAGCTCAGTACT
GAACTGCTTGAGGCAGGCAACGAAGCCACTATCACCCCATCCGCCATTCT
TGTGCTCACCAACAAGCGTGCCGCGTCTGTATTGGCACAGGCCAACGTTG
CTACAAGCGCCACTGCTTGGAATTTATGTCGCGCGGGCGAGCCGAACAAT
ATCAACTGGGCGGCGTTTTCTGTGCCCAGTTACCAAGCCGAAATGCGCAC
AGTTGCCGTCGCTGCCTTTGTTGTTGTGTTCACACTGTTCTGGACCATTC
CTGCAGCTGCGATAGCTGCTCTGTTCAGTTTGCAAAAGCTCGGCGAACTT
GACGGATTTGGCTGGACCACAAAAATCGAGGATACTAGCGCTCAATTGGC
CTCACTTATCGAAGGTTTGCTCCCTGTCATTGTTATGTCTGTTCTTATCA
GTTTGATTCCGACGCTGTTCCGATTTCTTGTCAGCCAAGAACGAGTCGTG
TCGTACTCGATTGTTGAGAGGAAGACGAGGGACTACTTCTTTTTCTTCAC
TGTTTTCTCTCCATTGGTGCCTCTATGCGGTATCGTGTACTTCGGTATCG
CATTCCTTGGGTTCAAGTACATGTTGCTGTTCAGCTGCTTCCAGCCCTGG
GAGGGAGGCGGTGATATGTACACCGGCGCATATTGGGGTACATTCTGCGG
CCTCATTCTTAAGCAGTTGGTCGTGATCGCCGTGCTTGGTCTCAAGAAGG
CACCCGCTCCAGCAATTGTGTGTATCATTCCCACAATTGCCACAATCCTG
CTGTCGATCGTCATTGCTAAACGATACGAAAGAATTTCGGAGCATGGAAG
TTTGCATGACATGTTTGAAAGCTCATCGAAACTTAATGAAATTCCCAGCA
CGTACAGTGGCGTGTACAAGCAACCTGGCGCAAGAGTTCCAGAGTTTTCT
AATTTGAATGGTGTTGAAGAGGCGGTGGATACATACGGAGAACCTGATTA
CGGAACGGAAAGCGAAGGACTAGAATCCGAGCATCCGAATGAACAAGTTG
GATACGTACCAGATCGGGCTGCGAAGAGAGAGGAAGTGTAA
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