Gchil3842.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3842.t1
Unique NameGchil3842.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length400
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:904508..905707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3842Gchil3842Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 904508..905707 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3842.t1.stop1Gchil3842.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 904508..904510 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3842.t1.CDS1Gchil3842.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 904508..905707 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3842.t1.exon1Gchil3842.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 904508..905707 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3842.t1.start1Gchil3842.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 905705..905707 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3842.t1Gchil3842.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 904508..905707 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3842.t1 ID=Gchil3842.t1|Name=Gchil3842.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=400bp
MPLSLRNQLFSREDPILVLDFLARFVAEADILGKNEGQAYIALPYFLRGL
AEDKYHSVRVLSLASGGGVTCWPEAVQYLLRSCATNSAIQQAILALRDTR
QRPGESETDYSSRLNKAFHRCGNVYPAEERCTVFVDGLDPAIRTLVARRR
EDRPKATYLKLVQFARAEGEALRARTPGSRVRFSKALMLQPGTASASMID
EQASRRDYDNVQLAHSDVHSIPTTELPSTLDESQYVIEDGTLLYADAGRV
RAPRLPHESGNFQFSRPGWRDTRPAVKFAEPRHPTPASGLICHLCYEPGH
NSPQCVLSLREWAQVVANYEAQSPEDKAAVPIASYIRARTNVPSHVSLPR
ARVVPAPDFRVTDVVGHPTASAVPSGPDAQALPAQRPEQPPPAEQAQKN*
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spliced messenger RNA

>Gchil3842.t1 ID=Gchil3842.t1|Name=Gchil3842.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1200bp|location=Sequence derived from alignment at tig00000010_pilon:904508..905707- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCTCTCACTTCGCAATCAGTTGTTTTCTAGAGAAGACCCAATATT
GGTGTTGGATTTCTTGGCACGCTTTGTCGCGGAAGCTGACATCCTTGGAA
AGAACGAGGGACAGGCCTACATTGCCTTACCGTACTTCTTACGTGGGCTT
GCAGAAGACAAGTATCACTCTGTCAGAGTTTTATCACTCGCGTCCGGAGG
AGGGGTAACATGCTGGCCCGAAGCAGTTCAGTACCTTCTGAGGTCGTGTG
CTACTAACTCCGCCATTCAGCAAGCTATACTTGCCCTGCGGGACACTCGC
CAACGTCCAGGTGAGTCGGAAACCGATTATTCGTCGCGCCTTAACAAGGC
CTTCCACCGCTGTGGCAATGTTTACCCCGCTGAAGAGCGTTGTACCGTGT
TTGTTGATGGTTTGGACCCGGCGATCCGGACTCTTGTTGCTCGACGTCGA
GAAGATAGACCTAAAGCCACGTATTTGAAACTAGTGCAGTTCGCTCGTGC
AGAAGGTGAAGCCCTGCGCGCACGCACTCCTGGCTCCAGGGTTAGGTTCT
CAAAAGCGTTGATGTTACAACCGGGTACCGCATCAGCTTCGATGATCGAC
GAACAGGCCTCTCGAAGGGATTATGATAACGTGCAGCTAGCCCATAGCGA
CGTTCATTCCATCCCGACAACGGAGTTACCCTCCACCCTGGACGAGTCAC
AATACGTGATTGAGGATGGTACGCTACTCTATGCGGATGCTGGTCGCGTC
CGTGCGCCACGCCTCCCACATGAGAGTGGTAATTTCCAATTTTCGCGTCC
TGGTTGGAGAGATACCCGCCCAGCGGTGAAGTTCGCCGAGCCTCGTCACC
CAACACCGGCCTCTGGTCTGATTTGTCATCTCTGCTACGAACCAGGCCAT
AATTCTCCACAATGTGTGTTGTCTCTCCGGGAATGGGCACAAGTCGTAGC
CAATTACGAGGCTCAATCCCCGGAGGACAAAGCAGCTGTCCCGATTGCAT
CTTATATCCGTGCTCGAACGAATGTTCCAAGTCACGTGTCGCTTCCCCGA
GCTCGGGTCGTACCTGCACCAGATTTCCGTGTCACCGACGTGGTTGGTCA
CCCCACCGCTTCTGCGGTACCTTCTGGACCTGATGCCCAGGCGTTGCCTG
CTCAACGCCCTGAGCAGCCGCCTCCGGCGGAGCAGGCCCAGAAAAACTAA
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protein sequence of Gchil3842.t1

>Gchil3842.t1 ID=Gchil3842.t1|Name=Gchil3842.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=400bp
MPLSLRNQLFSREDPILVLDFLARFVAEADILGKNEGQAYIALPYFLRGL
AEDKYHSVRVLSLASGGGVTCWPEAVQYLLRSCATNSAIQQAILALRDTR
QRPGESETDYSSRLNKAFHRCGNVYPAEERCTVFVDGLDPAIRTLVARRR
EDRPKATYLKLVQFARAEGEALRARTPGSRVRFSKALMLQPGTASASMID
EQASRRDYDNVQLAHSDVHSIPTTELPSTLDESQYVIEDGTLLYADAGRV
RAPRLPHESGNFQFSRPGWRDTRPAVKFAEPRHPTPASGLICHLCYEPGH
NSPQCVLSLREWAQVVANYEAQSPEDKAAVPIASYIRARTNVPSHVSLPR
ARVVPAPDFRVTDVVGHPTASAVPSGPDAQALPAQRPEQPPPAEQAQKN*
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mRNA from alignment at tig00000010_pilon:904508..905707-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3842.t1 ID=Gchil3842.t1|Name=Gchil3842.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1200bp|location=Sequence derived from alignment at tig00000010_pilon:904508..905707- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCTCTCACTTCGCAATCAGTTGTTTTCTAGAGAAGACCCAATATT
GGTGTTGGATTTCTTGGCACGCTTTGTCGCGGAAGCTGACATCCTTGGAA
AGAACGAGGGACAGGCCTACATTGCCTTACCGTACTTCTTACGTGGGCTT
GCAGAAGACAAGTATCACTCTGTCAGAGTTTTATCACTCGCGTCCGGAGG
AGGGGTAACATGCTGGCCCGAAGCAGTTCAGTACCTTCTGAGGTCGTGTG
CTACTAACTCCGCCATTCAGCAAGCTATACTTGCCCTGCGGGACACTCGC
CAACGTCCAGGTGAGTCGGAAACCGATTATTCGTCGCGCCTTAACAAGGC
CTTCCACCGCTGTGGCAATGTTTACCCCGCTGAAGAGCGTTGTACCGTGT
TTGTTGATGGTTTGGACCCGGCGATCCGGACTCTTGTTGCTCGACGTCGA
GAAGATAGACCTAAAGCCACGTATTTGAAACTAGTGCAGTTCGCTCGTGC
AGAAGGTGAAGCCCTGCGCGCACGCACTCCTGGCTCCAGGGTTAGGTTCT
CAAAAGCGTTGATGTTACAACCGGGTACCGCATCAGCTTCGATGATCGAC
GAACAGGCCTCTCGAAGGGATTATGATAACGTGCAGCTAGCCCATAGCGA
CGTTCATTCCATCCCGACAACGGAGTTACCCTCCACCCTGGACGAGTCAC
AATACGTGATTGAGGATGGTACGCTACTCTATGCGGATGCTGGTCGCGTC
CGTGCGCCACGCCTCCCACATGAGAGTGGTAATTTCCAATTTTCGCGTCC
TGGTTGGAGAGATACCCGCCCAGCGGTGAAGTTCGCCGAGCCTCGTCACC
CAACACCGGCCTCTGGTCTGATTTGTCATCTCTGCTACGAACCAGGCCAT
AATTCTCCACAATGTGTGTTGTCTCTCCGGGAATGGGCACAAGTCGTAGC
CAATTACGAGGCTCAATCCCCGGAGGACAAAGCAGCTGTCCCGATTGCAT
CTTATATCCGTGCTCGAACGAATGTTCCAAGTCACGTGTCGCTTCCCCGA
GCTCGGGTCGTACCTGCACCAGATTTCCGTGTCACCGACGTGGTTGGTCA
CCCCACCGCTTCTGCGGTACCTTCTGGACCTGATGCCCAGGCGTTGCCTG
CTCAACGCCCTGAGCAGCCGCCTCCGGCGGAGCAGGCCCAGAAAAACTAA
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Coding sequence (CDS) from alignment at tig00000010_pilon:904508..905707-

>Gchil3842.t1 ID=Gchil3842.t1|Name=Gchil3842.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1200bp|location=Sequence derived from alignment at tig00000010_pilon:904508..905707- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCTCTCACTTCGCAATCAGTTGTTTTCTAGAGAAGACCCAATATT
GGTGTTGGATTTCTTGGCACGCTTTGTCGCGGAAGCTGACATCCTTGGAA
AGAACGAGGGACAGGCCTACATTGCCTTACCGTACTTCTTACGTGGGCTT
GCAGAAGACAAGTATCACTCTGTCAGAGTTTTATCACTCGCGTCCGGAGG
AGGGGTAACATGCTGGCCCGAAGCAGTTCAGTACCTTCTGAGGTCGTGTG
CTACTAACTCCGCCATTCAGCAAGCTATACTTGCCCTGCGGGACACTCGC
CAACGTCCAGGTGAGTCGGAAACCGATTATTCGTCGCGCCTTAACAAGGC
CTTCCACCGCTGTGGCAATGTTTACCCCGCTGAAGAGCGTTGTACCGTGT
TTGTTGATGGTTTGGACCCGGCGATCCGGACTCTTGTTGCTCGACGTCGA
GAAGATAGACCTAAAGCCACGTATTTGAAACTAGTGCAGTTCGCTCGTGC
AGAAGGTGAAGCCCTGCGCGCACGCACTCCTGGCTCCAGGGTTAGGTTCT
CAAAAGCGTTGATGTTACAACCGGGTACCGCATCAGCTTCGATGATCGAC
GAACAGGCCTCTCGAAGGGATTATGATAACGTGCAGCTAGCCCATAGCGA
CGTTCATTCCATCCCGACAACGGAGTTACCCTCCACCCTGGACGAGTCAC
AATACGTGATTGAGGATGGTACGCTACTCTATGCGGATGCTGGTCGCGTC
CGTGCGCCACGCCTCCCACATGAGAGTGGTAATTTCCAATTTTCGCGTCC
TGGTTGGAGAGATACCCGCCCAGCGGTGAAGTTCGCCGAGCCTCGTCACC
CAACACCGGCCTCTGGTCTGATTTGTCATCTCTGCTACGAACCAGGCCAT
AATTCTCCACAATGTGTGTTGTCTCTCCGGGAATGGGCACAAGTCGTAGC
CAATTACGAGGCTCAATCCCCGGAGGACAAAGCAGCTGTCCCGATTGCAT
CTTATATCCGTGCTCGAACGAATGTTCCAAGTCACGTGTCGCTTCCCCGA
GCTCGGGTCGTACCTGCACCAGATTTCCGTGTCACCGACGTGGTTGGTCA
CCCCACCGCTTCTGCGGTACCTTCTGGACCTGATGCCCAGGCGTTGCCTG
CTCAACGCCCTGAGCAGCCGCCTCCGGCGGAGCAGGCCCAGAAAAACTAA
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