Gchil3822.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3822.t1
Unique NameGchil3822.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length146
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:801280..801717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7668.SPU_026541-tr
Preferred nameRPS23
PFAMsRibosom_S12_S23
Max annot lvl33208|Metazoa
KEGG koko:K02973
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue6.19e-80
EggNOG OGsCOG0048@1|root,KOG1749@2759|Eukaryota,39ZWD@33154|Opisthokonta,3BPBM@33208|Metazoa,3CU4X@33213|Bilateria
Descriptionmaintenance of translational fidelity
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3822Gchil3822Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 801280..801717 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3822.t1.stop1Gchil3822.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 801280..801282 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3822.t1.CDS1Gchil3822.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 801280..801717 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3822.t1.exon1Gchil3822.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 801280..801717 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3822.t1.start1Gchil3822.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 801715..801717 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3822.t1Gchil3822.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 801280..801717 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3822.t1 ID=Gchil3822.t1|Name=Gchil3822.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=146bp
MGNGKPAGMRCARKLRTHRREQKWHNKRYSRKHSATALKANPFGGASHAK
GIVLERIGIEAKQPNSAIRKSCRVQLIKNGKKIAAFVPGDGCLNFVEEND
EVLISGFGRSGHSVGDLPGVRFKVVKVAGVSLLALFRNKKEKPRA*
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spliced messenger RNA

>Gchil3822.t1 ID=Gchil3822.t1|Name=Gchil3822.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=438bp|location=Sequence derived from alignment at tig00000010_pilon:801280..801717- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAAATGGAAAGCCGGCGGGAATGCGCTGTGCGCGCAAGCTGCGTAC
CCATCGTCGCGAGCAGAAATGGCACAACAAGAGGTATTCTCGCAAGCATT
CCGCCACAGCTTTGAAGGCCAATCCGTTTGGAGGAGCCTCTCATGCGAAG
GGAATCGTTCTCGAACGAATTGGAATTGAGGCCAAGCAGCCCAATTCTGC
CATTCGAAAGTCTTGTCGTGTGCAACTCATCAAGAATGGAAAGAAGATCG
CTGCCTTTGTGCCGGGTGATGGCTGTCTCAACTTTGTCGAGGAAAACGAT
GAAGTTTTGATATCTGGTTTCGGTCGAAGCGGTCACTCTGTGGGTGATCT
GCCCGGTGTCCGGTTTAAGGTAGTAAAGGTTGCAGGCGTGTCTCTCCTTG
CTCTCTTCCGAAACAAGAAGGAAAAGCCACGAGCATAA
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protein sequence of Gchil3822.t1

>Gchil3822.t1 ID=Gchil3822.t1|Name=Gchil3822.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=146bp
MGNGKPAGMRCARKLRTHRREQKWHNKRYSRKHSATALKANPFGGASHAK
GIVLERIGIEAKQPNSAIRKSCRVQLIKNGKKIAAFVPGDGCLNFVEEND
EVLISGFGRSGHSVGDLPGVRFKVVKVAGVSLLALFRNKKEKPRA*
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mRNA from alignment at tig00000010_pilon:801280..801717-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3822.t1 ID=Gchil3822.t1|Name=Gchil3822.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=438bp|location=Sequence derived from alignment at tig00000010_pilon:801280..801717- (Gracilaria chilensis NLEC103_M9 male)
ATGGGAAATGGAAAGCCGGCGGGAATGCGCTGTGCGCGCAAGCTGCGTAC
CCATCGTCGCGAGCAGAAATGGCACAACAAGAGGTATTCTCGCAAGCATT
CCGCCACAGCTTTGAAGGCCAATCCGTTTGGAGGAGCCTCTCATGCGAAG
GGAATCGTTCTCGAACGAATTGGAATTGAGGCCAAGCAGCCCAATTCTGC
CATTCGAAAGTCTTGTCGTGTGCAACTCATCAAGAATGGAAAGAAGATCG
CTGCCTTTGTGCCGGGTGATGGCTGTCTCAACTTTGTCGAGGAAAACGAT
GAAGTTTTGATATCTGGTTTCGGTCGAAGCGGTCACTCTGTGGGTGATCT
GCCCGGTGTCCGGTTTAAGGTAGTAAAGGTTGCAGGCGTGTCTCTCCTTG
CTCTCTTCCGAAACAAGAAGGAAAAGCCACGAGCATAA
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Coding sequence (CDS) from alignment at tig00000010_pilon:801280..801717-

>Gchil3822.t1 ID=Gchil3822.t1|Name=Gchil3822.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=438bp|location=Sequence derived from alignment at tig00000010_pilon:801280..801717- (Gracilaria chilensis NLEC103_M9 male)
ATGGGAAATGGAAAGCCGGCGGGAATGCGCTGTGCGCGCAAGCTGCGTAC
CCATCGTCGCGAGCAGAAATGGCACAACAAGAGGTATTCTCGCAAGCATT
CCGCCACAGCTTTGAAGGCCAATCCGTTTGGAGGAGCCTCTCATGCGAAG
GGAATCGTTCTCGAACGAATTGGAATTGAGGCCAAGCAGCCCAATTCTGC
CATTCGAAAGTCTTGTCGTGTGCAACTCATCAAGAATGGAAAGAAGATCG
CTGCCTTTGTGCCGGGTGATGGCTGTCTCAACTTTGTCGAGGAAAACGAT
GAAGTTTTGATATCTGGTTTCGGTCGAAGCGGTCACTCTGTGGGTGATCT
GCCCGGTGTCCGGTTTAAGGTAGTAAAGGTTGCAGGCGTGTCTCTCCTTG
CTCTCTTCCGAAACAAGAAGGAAAAGCCACGAGCATAA
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