Gchil3811.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3811.t1
Unique NameGchil3811.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length412
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:519290..520597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMJ146CT
Max annot lvl2759|Eukaryota
Evalue5.49e-56
EggNOG OGs2DS7A@1|root,2S6FC@2759|Eukaryota
DescriptionDomain present in PSD-95, Dlg, and ZO-1/2.
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3811Gchil3811Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 519290..520597 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3811.t1Gchil3811.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 519290..520597 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3811.t1.start1Gchil3811.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 519290..519292 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3811.t1.CDS1Gchil3811.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 519290..520065 +
Gchil3811.t1.CDS2Gchil3811.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 520138..520597 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3811.t1.exon1Gchil3811.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 519290..520065 +
Gchil3811.t1.exon2Gchil3811.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 520138..520597 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3811.t1.intron1Gchil3811.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000010_pilon 520066..520137 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3811.t1.stop1Gchil3811.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 520595..520597 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3811.t1 ID=Gchil3811.t1|Name=Gchil3811.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=412bp
MTTFVNINAIGASALFPPSFTSFQGCKLYNTSFSHNSRRTSRSRIAVTPQ
CSDSFNYNIYQDGDDRSKRVVSDSDRSVVLQKPLGMVLEEGQDGMVFVAE
IDPDGNAAASGEVNEGDVLVAVSATFGDEVWSTRGVGLDRVMKSIRIRSG
DFVTLVLESPDKLSEMKTKAAEQAASRRSEARDKFGEREVLDPVTWTKAK
PQTNDVYEYGDPEQPQIDDALKQKLKREVAAPYEQNWILWIGAGILILVL
LSVAFGLTNHVGVSLGVAIFNIGFYDIPTASLKCRHASYIFLRNQRKRYI
FFTTKATQRRYYFQNTHRVIFVVDSNDRERFPEAREELNKTMVKDELENT
VLLVFTNKQDLPNAASTAGIVKALGLPELRSQPWYIMSCFATNEAGLHEG
VDRLANKLKDV*
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spliced messenger RNA

>Gchil3811.t1 ID=Gchil3811.t1|Name=Gchil3811.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1236bp|location=Sequence derived from alignment at tig00000010_pilon:519290..520597+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGACGTTTGTCAACATTAACGCAATTGGGGCTTCGGCCTTGTTTCC
CCCATCTTTCACATCTTTTCAAGGATGCAAACTGTACAATACTTCCTTCA
GCCACAATTCGCGCCGCACTTCGCGCTCACGGATTGCAGTAACTCCTCAA
TGCAGTGATTCTTTTAACTACAACATCTATCAAGACGGAGACGACCGCTC
CAAGCGAGTCGTAAGCGATTCAGATCGCTCAGTCGTCCTTCAAAAGCCGC
TCGGAATGGTATTGGAAGAGGGCCAGGATGGAATGGTGTTCGTAGCGGAA
ATCGACCCAGACGGCAATGCGGCTGCGTCTGGAGAGGTGAATGAGGGAGA
TGTGCTCGTGGCGGTTTCGGCCACATTTGGCGATGAAGTGTGGTCCACCA
GAGGTGTGGGGCTCGACAGAGTCATGAAGTCTATTCGCATTCGGTCTGGC
GATTTTGTCACCCTCGTGCTCGAAAGCCCAGACAAGCTATCCGAAATGAA
AACAAAAGCTGCCGAACAGGCTGCCAGTCGTAGATCGGAAGCCAGAGACA
AATTTGGTGAACGCGAGGTGTTGGACCCTGTGACATGGACAAAGGCCAAA
CCACAAACTAACGATGTGTATGAGTATGGTGATCCAGAACAACCCCAAAT
TGATGACGCTCTTAAACAGAAATTGAAACGCGAGGTTGCCGCACCATATG
AACAAAATTGGATTCTTTGGATTGGTGCTGGCATTCTCATTCTCGTTCTT
CTCAGTGTAGCTTTCGGATTAACCAATCATGTTGGCGTTTCACTCGGTGT
CGCCATCTTTAACATTGGCTTTTACGACATCCCTACCGCCTCGTTAAAGT
GCAGACATGCGTCATACATCTTTTTGCGAAACCAGCGGAAACGATATATT
TTCTTCACAACCAAAGCAACACAGCGGAGATACTACTTCCAGAACACCCA
CCGTGTAATATTCGTAGTTGATAGCAATGACCGTGAAAGATTCCCAGAAG
CCCGCGAGGAACTCAACAAGACAATGGTGAAAGACGAGCTCGAAAACACC
GTCTTGCTCGTCTTCACCAACAAACAGGATCTACCGAATGCTGCGAGCAC
CGCCGGCATTGTCAAAGCCCTTGGCCTTCCAGAGTTGCGCAGCCAACCGT
GGTACATCATGTCCTGTTTCGCAACCAACGAAGCCGGTTTGCATGAGGGT
GTTGACAGGCTGGCTAACAAGCTCAAAGATGTCTGA
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protein sequence of Gchil3811.t1

>Gchil3811.t1 ID=Gchil3811.t1|Name=Gchil3811.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=412bp
MTTFVNINAIGASALFPPSFTSFQGCKLYNTSFSHNSRRTSRSRIAVTPQ
CSDSFNYNIYQDGDDRSKRVVSDSDRSVVLQKPLGMVLEEGQDGMVFVAE
IDPDGNAAASGEVNEGDVLVAVSATFGDEVWSTRGVGLDRVMKSIRIRSG
DFVTLVLESPDKLSEMKTKAAEQAASRRSEARDKFGEREVLDPVTWTKAK
PQTNDVYEYGDPEQPQIDDALKQKLKREVAAPYEQNWILWIGAGILILVL
LSVAFGLTNHVGVSLGVAIFNIGFYDIPTASLKCRHASYIFLRNQRKRYI
FFTTKATQRRYYFQNTHRVIFVVDSNDRERFPEAREELNKTMVKDELENT
VLLVFTNKQDLPNAASTAGIVKALGLPELRSQPWYIMSCFATNEAGLHEG
VDRLANKLKDV*
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mRNA from alignment at tig00000010_pilon:519290..520597+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3811.t1 ID=Gchil3811.t1|Name=Gchil3811.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1308bp|location=Sequence derived from alignment at tig00000010_pilon:519290..520597+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGACGTTTGTCAACATTAACGCAATTGGGGCTTCGGCCTTGTTTCC
CCCATCTTTCACATCTTTTCAAGGATGCAAACTGTACAATACTTCCTTCA
GCCACAATTCGCGCCGCACTTCGCGCTCACGGATTGCAGTAACTCCTCAA
TGCAGTGATTCTTTTAACTACAACATCTATCAAGACGGAGACGACCGCTC
CAAGCGAGTCGTAAGCGATTCAGATCGCTCAGTCGTCCTTCAAAAGCCGC
TCGGAATGGTATTGGAAGAGGGCCAGGATGGAATGGTGTTCGTAGCGGAA
ATCGACCCAGACGGCAATGCGGCTGCGTCTGGAGAGGTGAATGAGGGAGA
TGTGCTCGTGGCGGTTTCGGCCACATTTGGCGATGAAGTGTGGTCCACCA
GAGGTGTGGGGCTCGACAGAGTCATGAAGTCTATTCGCATTCGGTCTGGC
GATTTTGTCACCCTCGTGCTCGAAAGCCCAGACAAGCTATCCGAAATGAA
AACAAAAGCTGCCGAACAGGCTGCCAGTCGTAGATCGGAAGCCAGAGACA
AATTTGGTGAACGCGAGGTGTTGGACCCTGTGACATGGACAAAGGCCAAA
CCACAAACTAACGATGTGTATGAGTATGGTGATCCAGAACAACCCCAAAT
TGATGACGCTCTTAAACAGAAATTGAAACGCGAGGTTGCCGCACCATATG
AACAAAATTGGATTCTTTGGATTGGTGCTGGCATTCTCATTCTCGTTCTT
CTCAGTGTAGCTTTCGGATTAACCAAGTAAATCTTTCTTATACCTTAAAC
ACAGTTTCTTCTCACCCCCTCCTTTTTCCACATATTGCCCGCTCTGAGTC
ATGTTGGCGTTTCACTCGGTGTCGCCATCTTTAACATTGGCTTTTACGAC
ATCCCTACCGCCTCGTTAAAGTGCAGACATGCGTCATACATCTTTTTGCG
AAACCAGCGGAAACGATATATTTTCTTCACAACCAAAGCAACACAGCGGA
GATACTACTTCCAGAACACCCACCGTGTAATATTCGTAGTTGATAGCAAT
GACCGTGAAAGATTCCCAGAAGCCCGCGAGGAACTCAACAAGACAATGGT
GAAAGACGAGCTCGAAAACACCGTCTTGCTCGTCTTCACCAACAAACAGG
ATCTACCGAATGCTGCGAGCACCGCCGGCATTGTCAAAGCCCTTGGCCTT
CCAGAGTTGCGCAGCCAACCGTGGTACATCATGTCCTGTTTCGCAACCAA
CGAAGCCGGTTTGCATGAGGGTGTTGACAGGCTGGCTAACAAGCTCAAAG
ATGTCTGA
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Coding sequence (CDS) from alignment at tig00000010_pilon:519290..520597+

>Gchil3811.t1 ID=Gchil3811.t1|Name=Gchil3811.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1236bp|location=Sequence derived from alignment at tig00000010_pilon:519290..520597+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGACGTTTGTCAACATTAACGCAATTGGGGCTTCGGCCTTGTTTCC
CCCATCTTTCACATCTTTTCAAGGATGCAAACTGTACAATACTTCCTTCA
GCCACAATTCGCGCCGCACTTCGCGCTCACGGATTGCAGTAACTCCTCAA
TGCAGTGATTCTTTTAACTACAACATCTATCAAGACGGAGACGACCGCTC
CAAGCGAGTCGTAAGCGATTCAGATCGCTCAGTCGTCCTTCAAAAGCCGC
TCGGAATGGTATTGGAAGAGGGCCAGGATGGAATGGTGTTCGTAGCGGAA
ATCGACCCAGACGGCAATGCGGCTGCGTCTGGAGAGGTGAATGAGGGAGA
TGTGCTCGTGGCGGTTTCGGCCACATTTGGCGATGAAGTGTGGTCCACCA
GAGGTGTGGGGCTCGACAGAGTCATGAAGTCTATTCGCATTCGGTCTGGC
GATTTTGTCACCCTCGTGCTCGAAAGCCCAGACAAGCTATCCGAAATGAA
AACAAAAGCTGCCGAACAGGCTGCCAGTCGTAGATCGGAAGCCAGAGACA
AATTTGGTGAACGCGAGGTGTTGGACCCTGTGACATGGACAAAGGCCAAA
CCACAAACTAACGATGTGTATGAGTATGGTGATCCAGAACAACCCCAAAT
TGATGACGCTCTTAAACAGAAATTGAAACGCGAGGTTGCCGCACCATATG
AACAAAATTGGATTCTTTGGATTGGTGCTGGCATTCTCATTCTCGTTCTT
CTCAGTGTAGCTTTCGGATTAACCAATCATGTTGGCGTTTCACTCGGTGT
CGCCATCTTTAACATTGGCTTTTACGACATCCCTACCGCCTCGTTAAAGT
GCAGACATGCGTCATACATCTTTTTGCGAAACCAGCGGAAACGATATATT
TTCTTCACAACCAAAGCAACACAGCGGAGATACTACTTCCAGAACACCCA
CCGTGTAATATTCGTAGTTGATAGCAATGACCGTGAAAGATTCCCAGAAG
CCCGCGAGGAACTCAACAAGACAATGGTGAAAGACGAGCTCGAAAACACC
GTCTTGCTCGTCTTCACCAACAAACAGGATCTACCGAATGCTGCGAGCAC
CGCCGGCATTGTCAAAGCCCTTGGCCTTCCAGAGTTGCGCAGCCAACCGT
GGTACATCATGTCCTGTTTCGCAACCAACGAAGCCGGTTTGCATGAGGGT
GTTGACAGGCTGGCTAACAAGCTCAAAGATGTCTGA
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